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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061872 ID=TCONS_00061872|Name=TCONS_00061872|organism=Clytia hemisphaerica|type=transcript|length=3048bpRun BLAST on NCBI protein sequence of TCONS_00061872-protein >TCONS_00061872-protein ID=TCONS_00061872-protein|Name=TCONS_00061872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=847bp MREGPSNATIDWNPLGEVYYRKVEVYSMLWKDRVDLNKYVAAGGTYGGPIRun BLAST on NCBI transcript from alignment at scaffold_361:327300..347159+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061872 ID=TCONS_00061872|Name=TCONS_00061872|organism=Clytia hemisphaerica|type=transcript|length=19860bp|location=Sequence derived from alignment at scaffold_361:327300..347159+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:327300..347159+ >TCONS_00061872 ID=TCONS_00061872|Name=TCONS_00061872|organism=Clytia hemisphaerica|type=CDS|length=53424bp|location=Sequence derived from alignment at scaffold_361:327300..347159+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061872 vs. Swiss-Prot (Human)
Match: VPS16 (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2) HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0 Identity = 363/834 (43.53%), Postives = 550/834 (65.95%), Query Frame = 2
Query: 65 TIDWNPLGE-VYYRKVEVYSMLWKDRVDLNKYVAAGGTYGGPIALVKKD-AASGATNQKPVIYIFTAAGQEQAAFKWDGGKLIQMGWSSSEELICVSEDGAVFMYDMFGSYIKQFSFGNEVQRSYVLRAEVFASHFGTGVCVLSGDYQFFVINNVNDVKVKRLQNPFQMDAPPSCWTVICAAEETEAKVLMAIDQSINELDSFQHKPKNPP-ISQAINSFIDIVVSFNQKYVAIFADTGLLWIGSSSLNEVYCEFNTHLSTRPAQLVWCGSG-----AVVGYWDNYLMMVGPTSDTVKYFVDNKVHLVQELDGVRIIGNYYQEFLQKVPAEVEDVFKLGSMKSSAMLLDASKEYHSYSPRVDDYLRAVKD--HLHEAVTDCLRAAGHLFDEKEQRELMRAASFGKSFVQDMRPQAFVEMAHTIRILNNIRNFKIGIPITYDQLQRLTLPVLIDRLIARRFFFLAVKICNYMKIPKKEGVSRVLAHWACYKVQQDTVDENQLAREIHNKLRDTPGISFTEIATKAYNRGKSALAIELLDYEPRSAEQVPLLMKMGKTELALQKAIESGETELIYSVTTYMRDHLPSTEFLMKIRLYPVAASLLMKICKTQDRSFLINLCYQDDKYQNLGALYIQESF-VEKNLDSRIKGLDKARIEFGKAQDPFKAQVTEDNIKLLEFQSRLQDQFGDQYLNKTIGDTLYQLIHKGYYKKADQLKKEFAIPDVRFWWTKIQALGASHAWKELEIFSKSKKSPIGYEPFVEACHKFGNNKVEAEKYMSKVPLDKKVQLFLKIGYYDEAAEAAFQSRSHDDLNLVASKAS--NNRSVQEKINIYRTQ 2527
T +WNPLG+ +YRK E+YSM W + +L + A YGGPIAL++ A + +PV+ I++A+G A+ W G ++ +GWS+ EEL+CV EDGAV +Y + G + + FS GNEV ++ VL A +F + FG+GV +L+G ++F + NV D+K++R+ + + PSCWTV+C ++ A +L+A+ + LD PP ++ ++SF+ + VSF +++A+F DTG +W+G++SL E CEFN ++ P Q+VWC AVV W+ LM+VG +++++ +D +LV ELDGVRI EFL +VPA E++FK+ SM A+LL+A KEY S + D+YLR +++ L +AV C+ AAGH Q+ L+RAASFGK F+ P +FV M +R+LN +R++ IGIP+TY Q ++LT+ VL+DRL+ RR + LA++IC Y+++P+ +GVSR+LAHWACYKVQQ V + +AR I+ KL DTPG+S+++IA +AY G++ LAI+LL+YEPRS EQVPLL+KM +++LAL KAIESG+T+L+++V ++++ L +F M +R P+A SL + CK Q+ L +L QDD +Q LG+ +I+ S+ E+ ++ R+ L A F KA++ F A+ TED ++LL Q RL+D+ G Q+L+ ++ DT+ LI G+ K+A+QL ++F IPD R WW K+ AL W+ELE FSKSKKSPIGY PFVE C K +NK EA+KY S+V ++KV+ L +G +AA+ A + R+ +L+LV S + + + +KI R Q
Sbjct: 5 TANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAASVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFSMGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTVLC--QDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMK-QHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRARAQ 835 The following BLAST results are available for this feature:
BLAST of TCONS_00061872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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