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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=transcript|length=395bp
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA
ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG
ccaaatattttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATC
AGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGA
TGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATA
TTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTG
CCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCC
AATGAATGGTTTGTTGCCTGATGACATAGTTGACAAAATGGATGA Run BLAST on NCBI protein sequence of TCONS_00065085-protein >TCONS_00065085-protein ID=TCONS_00065085-protein|Name=TCONS_00065085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
ILPRLTVFFFLFSSKVECNIILPYESPVEVIIEAKYFNVIATAVSLGITI
SGSNIPSSSSRLLASGDVIIIGGKITLKFEFNDIVFKRVDGNNIIVSDNL
PNFIKQNDNGLFATSLPMNGLLPDDIVDKMD Run BLAST on NCBI transcript from alignment at scaffold_43:10918..12783+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at scaffold_43:10918..12783+ (Clytia hemisphaerica)
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA
ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG
ccaaatattttaatgtaaGATCTATTTCAAGTTCAAAGTTTCATATCCCA
TCTTATTAGAAAAGAGAAGTTAATATTGGTTAAgagctttcattttattt
ttttgtttggaaataAGCATTTGATGAAAGTTTAAAAGGATGCAATTTTG
CTTGGAAGAAGATTTGATGAATTGGACACGAACATTCAGACTCATGCTTT
GataaaaaacattattttacaGGTCATAGCAACGGCTGTGTCATTAGGGA
TCACAATCAGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCT
TCTGGTGATGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTT
CAACGATATTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAG
ATAATCTGCCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTAGT
GAGTAAAGCTTTATTTTCTCAAGGACGGCNTCCAATTTTTATCAAGCCTT
TTTGCTAGTGAGTGAAGCTTTAAGGGATCCTATTTCAGTTTCTAtaactc
gggtaacttaatgcatgtcccaaaattgtattaatttttccgccccagtt
ccagtccctaaaccataacaaactatacatttttggaagcgtatttagAT
GTaaaataccgtattcggtgtaacttaaattctttctcagtataattaga
gatatcttaagaaaacctgattatgacgtcatgattgatgacgtcataaa
tacaaaaaattaaatatctcgagaaatataaatctaaactttatgaaatt
tggaccagttaTAAAGTACATTGagttgtttgaaaaaattttgaaagtat
ttcccaaaattaatgacgtcagcagaaattgcaatAATTcgagtttttgc
aataaaatgctgacatcagcaaattttcaaattttttaaaagaaattctc
ttcttcttgatgagttctatcatcTACCCATAAAATCGGTATGAAAAAac
ctttccagcggtatatgatatgacatgttctggaacaaaaataaaaattt
ttttcgggcatgcagactggtctgtaaattacttctGTAGCTcataactc
ggacccagtccattttcagatatatgttgtgatgttttttagaatcagtg
tgagaaaacctttccaacgatatatcatATGACATGCTTTGAAGATAAAA
ATTTTCCAGAGCCATCCACTAttttcttgcctgggaggcattctggtctg
taaaatacacaaacaggtgttccGGAAGTGGGTCAGaagcttaaaatgtt
tcttaccccctaaggtaccactgtaccaaatttcatgctttctagtcAAA
AACGCACAATTGATGCACACTTTCCCTGGACTATATGAACCTTTCCCTAT
AAACATATCACGCTTCTTTTTGAGCACAAAAATATGGTAAAAGTTTTATT
CTAGCTATAACTTTAACCACCCACCCGACAGTGGTCCCTACAACTTAATA
CATTACCCCACTGGTCAAATGACAGCCCATAAGTTGGACAGTCCAGATTG
AGGTCTGGTAGTGGTAATACAAAATGTCCCAGAGGATCTCGCCCCTATTC
TTTTTGAcactgaaaaaaatgtttctctctATAAAAAAGTGTTTGAAAGT
TGATTAggttcaaattcaaaatttaaaggttgatttatgatttcttttat
tcattttgCAGCATCTCTGCCAATGAATGGTTTGTTGCCTGATGACATAG
TTGACAAAATGGATGA Coding sequence (CDS) from alignment at scaffold_43:10918..12783+ >TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_43:10918..12783+ (Clytia hemisphaerica)
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA
ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG
ccaaatattttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATC
AGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGA
TGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATA
TTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTG
CCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCC
AATGAATGGTTTGTTGCCTGATGACATAGTTGACAAAATGGATattttgc
CCAGACTTActgtatttttctttctttttagctCTAAAGTTGAATGCAAC
ATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAGccaaata
ttttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATCAGTGGAT
CAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGATGTAATT
ATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATATTGTGTT
CAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTGCCAAAtt
ttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCCAATGAAT
GGTTTGTTGCCTGATGACATAGTTGACAAAATGGATattttgcCCAGACT
TActgtatttttctttctttttagctCTAAAGTTGAATGCAACATAATTT
TGCCTTATGAATCACCAGTTGAAGTAATCATTGAAGccaaatattttaat
GTCATAGCAACGGCTGTGTCATTAGGGATCACAATCAGTGGATCAAACAT
CCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGATGTAATTATAATTG
GGGGAAAGATAACCTTGAAATTTGAGTTCAACGATATTGTGTTCAAGAGG
GTTGATGGAAACAATATAATTGTCTCAGATAATCTGCCAAAttttatcaa
gcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCCAATGAATGGTTTGT
TGCCTGATGACATAGTTGACAAAATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065085-exon-scaffold_43-1491911889:10918..11031 | TCONS_00065085-exon-scaffold_43-1491911889:10918..11031 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1510915933:10918..11031 | TCONS_00065085-exon-scaffold_43-1510915933:10918..11031 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1575043694:10918..11031 | TCONS_00065085-exon-scaffold_43-1575043694:10918..11031 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1491911889:11240..11465 | TCONS_00065085-exon-scaffold_43-1491911889:11240..11465 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1510915933:11240..11465 | TCONS_00065085-exon-scaffold_43-1510915933:11240..11465 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1575043694:11240..11465 | TCONS_00065085-exon-scaffold_43-1575043694:11240..11465 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1491911889:12729..12783 | TCONS_00065085-exon-scaffold_43-1491911889:12729..12783 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1510915933:12729..12783 | TCONS_00065085-exon-scaffold_43-1510915933:12729..12783 | Clytia hemisphaerica | exon |
| TCONS_00065085-exon-scaffold_43-1575043694:12729..12783 | TCONS_00065085-exon-scaffold_43-1575043694:12729..12783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_43 | supercontig | scaffold_43:10918..12783 + |
Blast
The following BLAST results are available for this feature:
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