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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061835 ID=TCONS_00061835|Name=TCONS_00061835|organism=Clytia hemisphaerica|type=transcript|length=2224bp
ATATGCTCATAATTGTACTCCTTATCTTTGTCCTCATCAGAATTTTGATG
CTTTAGTTTCTTGATGAAGATAGTTCAGATTTCTCTTGTCGAGTCTCTTG
TCGAGTTCCACATGATTTACCTTACTTTTAAGAATCTGATAACGCATAAT
TATCTTGGAAAGCTATTACTGTGTTTCTCTGCGTCTTACAAGCATGGATC
AACTTAGCATTCTTCTGTCGATGCAATCGTTTTTACTGCGTAACCATGGG
CAGCTTCTTCATAATGTTTTGTTATGTTATTCTGTTTTCTCAGTGAAACC
ATGCGTTCCTTCACTTCGGACATCTTTGACTACCAAACTATGTCTCTCAG
GACATTTTAACCATTCTTCTATTGATAACGGTGTGTTTGACTGTTCCTTT
TTagcttcttcgttttcttcGATTGAAGATAAGCTTGTTTTTGACTCGCT
TTCTTCTGTTGTTGAGATTAATCTCTTCCCACTGCGAAACCACCTCTTGT
GCATACTTTTGATTCTTTATGTCGAACTATCTTTTTAATTGCAAACAAAT
TGCTTTTAGATGTTATGTTTATTTCTTTATGCAGTCATGTGCATACTTTC
ATTTTGGGCATTCTTTTCAACCACTTGTGCAATACCAATTTTTGTTCATT
TCGATTGTTTGTACATCATTAAAACAGTTCTGTTTGACATTATGCAGTTG
TTTTAATACCCTCTTCTTCGGTACATTTCTCGAAACATCTAGACAATATT
TcgtttgtttgctttgttttcaaaacttttcagctTGAGAAACAACTTTT
TTCATCTTCTGTGATGAGATTTTGAATTTAGTCAAGTTATTCGCTTAACT
GCTTCCTCACATTCAGCATGTGTTCATGCTTGATTCATTGATTTTAATTT
AAATcttctaattttattttaatttttctctcaTTTTGCGCATAATATTT
CTCAtcccttttttttttacatGGAATTCTATCTTAGCCTTTTGCTGATT
TCGAAAGTTTTTCCTTTATATCTTTCTGGGATTCCTCTTTCCCATACGGT
ACATAATCTTTGGTGCCTCTATTTGTTTAATACTTCATTTTCATTAGATG
CCTTCCCAAAGCGTGTTTACGTTTAAATGTGTAATCTTGCTGGACTACCA
TTTTGCTTACGTTAAGCAAATACACCGTTATCTTTCTCATCAGGAACATA
TTCATCTGTGTATTGCTACTCGCCTTTCTTCGGCTATATTACTCATGATA
CGTACTCTATGACATTTTATTTCTATTCAGGCTTGCAAACTCAAGTCAAC
GTTCTCGATAATGGGCCCTTCGAGGATGAATTCTCAAAGATTGCGTGCTC
TGACATTATGTATTATTATTCGCTGCGAATGATTCGCACATGCGATCGAC
TTTCAACCATGGTTTCTGCTGTCACTGCACAAGGCATCAGTACATATCCC
CAAACCATGGACTTTCGTTAACGCGTTATCGTTCCTGGAATATACTCAAA
TTTCAGTTCTTCAATTTTACGTTTCCATTTATATTTTCTATTCTTTACTT
GTATTGCGCCTTAAATCTTTAATCTTCAAATTGCTTTTACTGCACCACAA
TTCTTAATGTTCGGACTAATGTTCGCGAACCACATCATGATTTTATTTTA
CTCTTGATTCatatttcatcataaatatttgTAAGTGACAACATTCGTAT
TTTCTCATAAATACCCGCAAATCACAAAAATTCCTACACACGTACCTCTT
GTAATtgccattaaattctaattaactTCGTCCTAACCCTGACAAAGGGG
AGCTGTGGGGTACTGTCCTTGCTCAAGGGAGCCCCAGAACATTTTATAGT
CCTGCTCAGGATAACAAATGATTTCACCAAATCATATCCATACCATAACA
ATATCAATCAATAAGTCAatttcaagaaactttttaatTCAAGAAACTTC
GAATGGCCATTTCAACTCAATGTATCATTTGACCATTCCAACCATGAAAC
ATCTCAAATGTTCATGCTAAAATATTTTATGCAAATGTTCAACACTGTTT
TGTTCATCTTTATAGCTCTCAAGCTAACTCACTCTCGTATCGCATCCCCA
GAACAACACAACAACTTCCGAATCATTAcgatctcggtagaacctccaTT
TGTTAGCCTTGTGAGTTAACAAAATGTTGTTCTGGGGGTGTGATAAATGT
AAGAGTTTGTAACTACGGTTTTCT Run BLAST on NCBI transcript from alignment at scaffold_360:53595..55818 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061835 ID=TCONS_00061835|Name=TCONS_00061835|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at scaffold_360:53595..55818 (Clytia hemisphaerica)
AGAAAACCGTAGTTACAAACTCTTACATTTATCACACCCCCAGAACAACA
TTTTGTTAACTCACAAGGCTAACAAAtggaggttctaccgagatcgTAAT
GATTCGGAAGTTGTTGTGTTGTTCTGGGGATGCGATACGAGAGTGAGTTA
GCTTGAGAGCTATAAAGATGAACAAAACAGTGTTGAACATTTGCATAAAA
TATTTTAGCATGAACATTTGAGATGTTTCATGGTTGGAATGGTCAAATGA
TACATTGAGTTGAAATGGCCATTCGAAGTTTCTTGAattaaaaagtttct
tgaaatTGACTTATTGATTGATATTGTTATGGTATGGATATGATTTGGTG
AAATCATTTGTTATCCTGAGCAGGACTATAAAATGTTCTGGGGCTCCCTT
GAGCAAGGACAGTACCCCACAGCTCCCCTTTGTCAGGGTTAGGACGAagt
taattagaatttaatggcaATTACAAGAGGTACGTGTGTAGGAATTTTTG
TGATTTGCGGGTATTTATGAGAAAATACGAATGTTGTCACTTAcaaatat
ttatgatgaaatatGAATCAAGAGTAAAATAAAATCATGATGTGGTTCGC
GAACATTAGTCCGAACATTAAGAATTGTGGTGCAGTAAAAGCAATTTGAA
GATTAAAGATTTAAGGCGCAATACAAGTAAAGAATAGAAAATATAAATGG
AAACGTAAAATTGAAGAACTGAAATTTGAGTATATTCCAGGAACGATAAC
GCGTTAACGAAAGTCCATGGTTTGGGGATATGTACTGATGCCTTGTGCAG
TGACAGCAGAAACCATGGTTGAAAGTCGATCGCATGTGCGAATCATTCGC
AGCGAATAATAATACATAATGTCAGAGCACGCAATCTTTGAGAATTCATC
CTCGAAGGGCCCATTATCGAGAACGTTGACTTGAGTTTGCAAGCCTGAAT
AGAAATAAAATGTCATAGAGTACGTATCATGAGTAATATAGCCGAAGAAA
GGCGAGTAGCAATACACAGATGAATATGTTCCTGATGAGAAAGATAACGG
TGTATTTGCTTAACGTAAGCAAAATGGTAGTCCAGCAAGATTACACATTT
AAACGTAAACACGCTTTGGGAAGGCATCTAATGAAAATGAAGTATTAAAC
AAATAGAGGCACCAAAGATTATGTACCGTATGGGAAAGAGGAATCCCAGA
AAGATATAAAGGAAAAACTTTCGAAATCAGCAAAAGGCTAAGATAGAATT
CCatgtaaaaaaaaaagggaTGAGAAATATTATGCGCAAAAtgagagaaa
aattaaaataaaattagaagATTTAAATTAAAATCAATGAATCAAGCATG
AACACATGCTGAATGTGAGGAAGCAGTTAAGCGAATAACTTGACTAAATT
CAAAATCTCATCACAGAAGATGAAAAAAGTTGTTTCTCAagctgaaaagt
tttgaaaacaaagcaaacaaacgAAATATTGTCTAGATGTTTCGAGAAAT
GTACCGAAGAAGAGGGTATTAAAACAACTGCATAATGTCAAACAGAACTG
TTTTAATGATGTACAAACAATCGAAATGAACAAAAATTGGTATTGCACAA
GTGGTTGAAAAGAATGCCCAAAATGAAAGTATGCACATGACTGCATAAAG
AAATAAACATAACATCTAAAAGCAATTTGTTTGCAATTAAAAAGATAGTT
CGACATAAAGAATCAAAAGTATGCACAAGAGGTGGTTTCGCAGTGGGAAG
AGATTAATCTCAACAACAGAAGAAAGCGAGTCAAAAACAAGCTTATCTTC
AATCgaagaaaacgaagaagctAAAAAGGAACAGTCAAACACACCGTTAT
CAATAGAAGAATGGTTAAAATGTCCTGAGAGACATAGTTTGGTAGTCAAA
GATGTCCGAAGTGAAGGAACGCATGGTTTCACTGAGAAAACAGAATAACA
TAACAAAACATTATGAAGAAGCTGCCCATGGTTACGCAGTAAAAACGATT
GCATCGACAGAAGAATGCTAAGTTGATCCATGCTTGTAAGACGCAGAGAA
ACACAGTAATAGCTTTCCAAGATAATTATGCGTTATCAGATTCTTAAAAG
TAAGGTAAATCATGTGGAACTCGACAAGAGACTCGACAAGAGAAATCTGA
ACTATCTTCATCAAGAAACTAAAGCATCAAAATTCTGATGAGGACAAAGA
TAAGGAGTACAATTATGAGCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061835-exon-scaffold_360-1491911889:53595..55818 | TCONS_00061835-exon-scaffold_360-1491911889:53595..55818 | Clytia hemisphaerica | exon |
| TCONS_00061835-exon-scaffold_360-1510915933:53595..55818 | TCONS_00061835-exon-scaffold_360-1510915933:53595..55818 | Clytia hemisphaerica | exon |
| TCONS_00061835-exon-scaffold_360-1575043694:53595..55818 | TCONS_00061835-exon-scaffold_360-1575043694:53595..55818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:53595..55818 . |
Blast
The following BLAST results are available for this feature:
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