TCONS_00061768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061768
Unique NameTCONS_00061768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061768 ID=TCONS_00061768|Name=TCONS_00061768|organism=Clytia hemisphaerica|type=transcript|length=426bp
agctaactcgaaaattgctaactcgaaaattgctaactcgaagttttcta
actcaaagttttctaactcgaagattccgGGCCTCCTTTAAATAAACCTT
TTAGAAAAATCTTGATGTTTGAGTAAAAAGCATGCATTTCCCCGCTCTTG
TCATCTACAAAATGAACCATCAAATATAAAACCATGGCTTCTTGAATGTT
TGAGAATTCAACTACGACTCCAGTATTTTCTATAATATTGACAATTAATG
TTCCGTTGAATGTTGATTTTCCCAATTTGGTGACACTTCCATGCCAAACT
ACTTTAGGATCCTTTTCGCCACTGTGGTAATAAAGAATAACTAGCCGGtg
cccggcgtcgcacgccggtttagctgtttgctgaacgcatttaaagtcct
ttggatgttgggaaggtggcttaaac
Run BLAST on NCBI

protein sequence of TCONS_00061768-protein

>TCONS_00061768-protein ID=TCONS_00061768-protein|Name=TCONS_00061768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
FKPPSQHPKDFKCVQQTAKPACDAGHRLVILYYHSGEKDPKVVWHGSVTK
LGKSTFNGTLIVNIIENTGVVVEFSNIQEAMVLYLMVHFVDDKSGEMHAF
YSNIKIFLKGLFKGGPESSS
Run BLAST on NCBI

transcript from alignment at scaffold_36:1423332..1423757

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061768 ID=TCONS_00061768|Name=TCONS_00061768|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_36:1423332..1423757 (Clytia hemisphaerica)
gtttaagccaccttcccaacatccaaaggactttaaatgcgttcagcaaa
cagctaaaccggcgtgcgacgccgggcaCCGGCTAGTTATTCTTTATTAC
CACAGTGGCGAAAAGGATCCTAAAGTAGTTTGGCATGGAAGTGTCACCAA
ATTGGGAAAATCAACATTCAACGGAACATTAATTGTCAATATTATAGAAA
ATACTGGAGTCGTAGTTGAATTCTCAAACATTCAAGAAGCCATGGTTTTA
TATTTGATGGTTCATTTTGTAGATGACAAGAGCGGGGAAATGCATGCTTT
TTACTCAAACATCAAGATTTTTCTAAAAGGTTTATTTAAAGGAGGCCcgg
aatcttcgagttagaaaactttgagttagaaaacttcgagttagcaattt
tcgagttagcaattttcgagttagct

Coding sequence (CDS) from alignment at scaffold_36:1423332..1423757

>TCONS_00061768 ID=TCONS_00061768|Name=TCONS_00061768|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_36:1423332..1423757 (Clytia hemisphaerica)
tttaagccaccttcccaacatccaaaggactttaaatgcgttcagcaaac
agctaaaccggcgtgcgacgccgggcaCCGGCTAGTTATTCTTTATTACC
ACAGTGGCGAAAAGGATCCTAAAGTAGTTTGGCATGGAAGTGTCACCAAA
TTGGGAAAATCAACATTCAACGGAACATTAATTGTCAATATTATAGAAAA
TACTGGAGTCGTAGTTGAATTCTCAAACATTCAAGAAGCCATGGTTTTAT
ATTTGATGGTTCATTTTGTAGATGACAAGAGCGGGGAAATGCATGCTTTT
TACTCAAACATCAAGATTTTTCTAAAAGGTTTATTTAAAGGAGGCCcgga
atcttcgagttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038758XLOC_038758Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061768-proteinTCONS_00061768-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061768-exon-scaffold_36-1491911889:1423332..1423757TCONS_00061768-exon-scaffold_36-1491911889:1423332..1423757Clytia hemisphaericaexon
TCONS_00061768-exon-scaffold_36-1510915933:1423332..1423757TCONS_00061768-exon-scaffold_36-1510915933:1423332..1423757Clytia hemisphaericaexon
TCONS_00061768-exon-scaffold_36-1575043694:1423332..1423757TCONS_00061768-exon-scaffold_36-1575043694:1423332..1423757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1423332..1423757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618407	1.58009	3.78821	4.65588	2.14292	1.02083	3.01314	5.01157	3.27341	2.86216	1.11761	4.08493	1.92091	1.9152	2.20606	2.00298	1.85705	1.00896	1.12341	0.217972	0.91445	1.03079	0.401063	0.450875	2.46083	2.96638	1.79083	3.08925	0.258516	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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