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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061743 ID=TCONS_00061743|Name=TCONS_00061743|organism=Clytia hemisphaerica|type=transcript|length=2080bp
GCGATTTTTATTTATCAACATTCCAACTTGAATCCCCCATCATCACCAAA
ATACGTCTAGTTATCAATGTATCGGTTTCGATGGTCgaaattttagagat
ttttctCCTTCATACAGTGAATAGTTCTACGAGAAAATGTATTGCAGCGG
CCAGTATGGATGTAGAGATCCAAAGTTCTTTATACAAAATACAATCGAAT
TGTTGGTCATCATTAAGTATGAAAATTTGAGAGGAATTGGTTGATTTGTC
GCTTATTAGAATGTATTTTATGCATGCATTTTACCTAGAATGTTCTCATG
GGTTATATTTTGGTTGAGTAATGTCTACATAAGCTAAGAGTGTTGTATTA
TCTCAAGCAAGACGAGAGTTGTATattcaaaaatggaaaaatattatAGA
TCAGTgttttttgaatgtcaaaacTAGGAGGTTAAAAAGGACAAGATTGT
TTTAGATGTTAATAAGCTCCTTGGTTTGTGTATGAGATCTTATGTTTGCC
CTATGATGTCCTGACtagcaatttttttaattggaGAAGTAGTTAGTTta
tcttaaaaaataaaaacacatttTGGTAGCTGGATCACCACCTTGCTTTG
GACCATGCTAACGTAATTTGGCACACTTCACTcaaaagaatttaattttt
tttcattattttggttTTGTATCAAAATCTTCTTGACTGGCACAAACCAG
TTGAAGCAATTTAAATAAATGACTCTTTGTTTACACAGTCTTTACATTCC
GGATTATCAATGTTTGGGCCAAAAGAATACTTTCTTATTTTGGCCCAAAC
ATGACCCAAGAATGTTTGGGATACATATGCTTGGAAAAAACTCTTGTCTA
TTGCTCgttccgacatcgactttttatttctgcctatcttctctgaggct
cttttctgaccccctggtgacttttctaactcatttactatgttttctga
ctattTGAAAGTGTTTTAACTGaccttgaaatatcgacccgaccgggatt
cgaacccactaaatgagAGAGTTTCTGAttagaaacccagcgcgctatcc
cttgagccacactcgcacatcgaatcacaaaatttggaaatacttataga
atgacaaaaaagacgggggtgaTGTTATAATAATATGGgcaaaattgccc
cttttttaacctgactgaaattcgagccgttactagcaaccctgcggggc
ccaaggcgccgagtatgcacccggcacagcgacaagccgttactagcaac
cctgaccctacctaactgttagttaatcaaNgggcccaaggcgccgagta
tgcacccggcacagtgacaagcagtcactagcaaccctgacctaaacaat
cccaaacagcaaaacccccggaaaatttaaaatgtcagAACGACCAATAG
ACAAGAGATTTTTCCCATATGCTTTGGCCATACAGTTGGTCATTGATACA
TGGAAGTTAACATTGTACCTTTCGGAAACGACATGATATAAGGTGGCAGA
TTTCAGACTTGCATATAGCTTTCAGTAAaaatttagtttagtttttttaa
cagaaagctacacttttttacaatttggcATTTAAGCCATTGACAAAGTT
GGCTTGGATTAGTGGGTGGTATTCTTTGCTAATGTTGAACCTGGAAAATC
CATTGTGATGTCCAGAGCCAGTGTTGCTCATTTATTTCTACTTTTCTAGC
CTTCTCTTAAACAGTTGGGTGTTTAATATAAAAAcagcaattattgctct
ttttggcaattattgctgaaaacagcaattttttcaacgatgaaatgcta
aatcagcagaaaagtgaaaaaagtaaataaatgtaaattgccgtttttgg
caACTATTGCagttttttggggaaaaaagttgattttattattgaacacg
tggtatttgacaccctcacAATAACACCCTCACTGGCTGCATTTcagcat
cgatgcaggatctttttacatattactttagaacttttcatgttattaag
ccacaaaaaattgaaaaaatcacctTAAAAATCCGAAACACCtttgacat
ctttgcccttataaGGATAACATATTTTGC Run BLAST on NCBI transcript from alignment at scaffold_36:1011201..1013280 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061743 ID=TCONS_00061743|Name=TCONS_00061743|organism=Clytia hemisphaerica|type=transcript|length=2080bp|location=Sequence derived from alignment at scaffold_36:1011201..1013280 (Clytia hemisphaerica)
GCAAAATATGTTATCCttataagggcaaagatgtcaaaGGTGTTTCGGAT
TTTTAaggtgattttttcaattttttgtggcttaataacatgaaaagttc
taaagtaatatgtaaaaagatcctgcatcgatgctgAAATGCAGCCAGTG
AGGGTGTTATTgtgagggtgtcaaataccacgtgttcaataataaaatca
acttttttccccaaaaaactGCAATAGTtgccaaaaacggcaatttacat
ttatttacttttttcacttttctgctgatttagcatttcatcgttgaaaa
aattgctgttttcagcaataattgccaaaaagagcaataattgctgTTTT
TATATTAAACACCCAACTGTTTAAGAGAAGGCTAGAAAAGTAGAAATAAA
TGAGCAACACTGGCTCTGGACATCACAATGGATTTTCCAGGTTCAACATT
AGCAAAGAATACCACCCACTAATCCAAGCCAACTTTGTCAATGGCTTAAA
Tgccaaattgtaaaaaagtgtagctttctgttaaaaaaactaaactaaat
ttTTACTGAAAGCTATATGCAAGTCTGAAATCTGCCACCTTATATCATGT
CGTTTCCGAAAGGTACAATGTTAACTTCCATGTATCAATGACCAACTGTA
TGGCCAAAGCATATGGGAAAAATCTCTTGTCTATTGGTCGTTctgacatt
ttaaattttccgggggttttgctgtttgggattgtttaggtcagggttgc
tagtgactgcttgtcactgtgccgggtgcatactcggcgccttgggcccN
ttgattaactaacagttaggtagggtcagggttgctagtaacggcttgtc
gctgtgccgggtgcatactcggcgccttgggccccgcagggttgctagta
acggctcgaatttcagtcaggttaaaaaaggggcaattttgcCCATATTA
TTATAACAtcacccccgtcttttttgtcattctataagtatttccaaatt
ttgtgattcgatgtgcgagtgtggctcaagggatagcgcgctgggtttct
aaTCAGAAACTCTctcatttagtgggttcgaatcccggtcgggtcgatat
ttcaaggtCAGTTAAAACACTTTCAaatagtcagaaaacatagtaaatga
gttagaaaagtcaccagggggtcagaaaagagcctcagagaagataggca
gaaataaaaagtcgatgtcggaacGAGCAATAGACAAGAGTTTTTTCCAA
GCATATGTATCCCAAACATTCTTGGGTCATGTTTGGGCCAAAATAAGAAA
GTATTCTTTTGGCCCAAACATTGATAATCCGGAATGTAAAGACTGTGTAA
ACAAAGAGTCATTTATTTAAATTGCTTCAACTGGTTTGTGCCAGTCAAGA
AGATTTTGATACAAaaccaaaataatgaaaaaaaattaaattcttttgAG
TGAAGTGTGCCAAATTACGTTAGCATGGTCCAAAGCAAGGTGGTGATCCA
GCTACCAaaatgtgtttttattttttaagataAACTAACTACTTCtccaa
ttaaaaaaattgctaGTCAGGACATCATAGGGCAAACATAAGATCTCATA
CACAAACCAAGGAGCTTATTAACATCTAAAACAATCTTGTCCTTTTTAAC
CTCCTAgttttgacattcaaaaaacACTGATCTataatatttttccattt
ttgaatATACAACTCTCGTCTTGCTTGAGATAATACAACACTCTTAGCTT
ATGTAGACATTACTCAACCAAAATATAACCCATGAGAACATTCTAGGTAA
AATGCATGCATAAAATACATTCTAATAAGCGACAAATCAACCAATTCCTC
TCAAATTTTCATACTTAATGATGACCAACAATTCGATTGTATTTTGTATA
AAGAACTTTGGATCTCTACATCCATACTGGCCGCTGCAATACATTTTCTC
GTAGAACTATTCACTGTATGAAGGagaaaaatctctaaaatttcGACCAT
CGAAACCGATACATTGATAACTAGACGTATTTTGGTGATGATGGGGGATT
CAAGTTGGAATGTTGATAAATAAAAATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061743-exon-scaffold_36-1491911889:1011201..1013280 | TCONS_00061743-exon-scaffold_36-1491911889:1011201..1013280 | Clytia hemisphaerica | exon |
| TCONS_00061743-exon-scaffold_36-1510915933:1011201..1013280 | TCONS_00061743-exon-scaffold_36-1510915933:1011201..1013280 | Clytia hemisphaerica | exon |
| TCONS_00061743-exon-scaffold_36-1575043694:1011201..1013280 | TCONS_00061743-exon-scaffold_36-1575043694:1011201..1013280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1011201..1013280 . |
Blast
The following BLAST results are available for this feature:
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