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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061649 ID=TCONS_00061649|Name=TCONS_00061649|organism=Clytia hemisphaerica|type=transcript|length=438bp
GGAAAGACTTTATACCGGCTGCTTTATCTTACTTGATTGACAAGACGAAA
TAATAAGATGGAAAAAAGGCGACGCTCTTTCCCATTCGTGTTCCGTCGTT
CCCGGACGCCGTTAGATTCTACCACGGATTCCcgtcaaaacaacaacaat
aacaacacAAATCGAAAAGTTGATCAACTCAAAGATCAACCTTCGCCAAA
GTtgaagtcaaaatcaaaaacactTTCCCCGATCcttaaaaatcgtaaaa
aatcgTCCACCGAAGATAACGCTAATCACTCCGCTGCGGATTCCataaat
aataataagaaaGAGAAGAGCGTAGGTAATGTGTTATTGAACGTGTTACC
AGTAATTTCGCTGACATCAGCAGATAATAAGACGACCGAAGATCCTGAAG
AGATGAAAAAAATTAGCCATAAAGAGCAGGCAAGCTTG Run BLAST on NCBI transcript from alignment at scaffold_36:155746..158998- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061649 ID=TCONS_00061649|Name=TCONS_00061649|organism=Clytia hemisphaerica|type=transcript|length=3253bp|location=Sequence derived from alignment at scaffold_36:155746..158998- (Clytia hemisphaerica)
GGAAAGACTTTATACCGGCTGCTTTATCTTACTTGATTGACAAGACGAAA
TAATAAGGTACATAATTTTGTTAGGCGAAATCGATTCGGAAAATCCATCT
ATTTGGAAAATCATCTTCAAAATGGTTGCCGGGGGGGGGGGGGTTAATTT
TCTTGATTGACAAGAAGAAATAATAAGGTACATAATTTTGTTAGGCGAAA
TCGATTCGGAAAATCCATCTATTTGGAAAATCATCTTCAAAATGGTTGCC
GGGGGGGGGGGGGTTAATTTTCTTGATTGACAAGAAGAAATAATAAGGTA
CATAATTTTGATGCCAGGTGGCATCGATTTCGGGGGGGGGGGGTTCTAAA
TCTGATAAAGTCCTTTTGGACCATTCCAGGAAATTGTCAGCAACCTTCAT
ATGGTTGCTATCAAACGGTGCATGGGTTTGCCGCTCGCAAAAGTTTGCAA
AGTATTTACTTTGATAATCATACAGTGGGCTGTTCCAATTAAAAATTTCC
ATACAGGGTTGTGAAAGGAACATATTTCAAGTCAAAAAAAATCTTAAAAA
AGAACCTTTGTAAAATAGGACCCTTAAACTAACTTAAATCAGTCATTTAC
CCCCTGAAAATTTTAGAAAAACATTTTTACCCTCTGGGCTCTGCAAATTT
CAGAATAACTTTTTACCCTCTTGAAAATGAAAGAAAAACACTCCTTTATA
CTCTCTGGAAATTCTTCTCGGTTTAAAGACAGCAATCCTTTCATAACTCT
ACTTTATAATCGCCTCCTCCTTGGAAATGTTCGTTCGCCCCCGTGCATGG
ATATTTTAAGAGAAGTAAACAATCATGGTCTGAATATGTTGCCATTTCTG
GGTATTTGAGAGTTTTGCAGAATTTAAAGCTAATTTATTTAATCGGATAA
TTTCAATTTAGGAGAGGTATATTTTCAGCTTAGTGGGACCATTAACAAGC
TTTTGGGTCCTAAGCTTCTAAGTCTCATGTTAAAACTCAGATTAAAAACT
CTACCTTCTAAAACCCTAAGTTAAAACACTTTAAAACTACTTTCGGTTTT
TAAAATTTTGCAAGGAAATTCCTTTTTTGCCAAATATTATGGTCATGCTT
GTAGTTCCACGGAAATCAGTTCGTGATAAATTTTGTTGCTTGGGAAAGAC
TTAAAAATGATTACTAGTTAGGTCGGATTTATACGGAGAAGTTAAGATTG
GCATCACTGCGAGAAATGAAGGATCATTTATGAGTTTTTTTCATTTTGCA
GGTTATTTTTGACATAGAAATGTTAGGTTTTGAGTTACTTATTTGAAAGA
CTATTGAGTGTCTATTTGGAATTATGTCTGCAGTATTATTATGTGGACTA
GAAGAAAAAATGAGAATAAAGAGTTTCTAGGCCTGTTTTCTTTGTAACAT
TGAGAGAATTTCTCTTAATGTAATGGGCTCTTCCAGAAAATGTTCGTACA
TAGGGGGTGGAGGATATTATGTCAACAAAATTTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAAATGTTTTATCCTCTACTCCCCATATTCAA
TTTTTTCTGGAGCCTAATTCACTGGCGATTCGGAGAAGTCTTGATAGCTT
TAGATTGCTTTTTTCAATTTTTTTACATAATAGTCAGTATGTTACCCCTG
ACTCCTCTCCTTTCAAAACTTTCAAAAATGGGCGCTGGATATTTTGGAAT
AGTCTTCTTTGAATTGTCAGGTTTTGTGGAAGTCCGGCTCGTGCGCACTC
CTGTCCTGCACTTTAACCCTTGTACCTACGGGTTGTTCGACCAGATTCTC
TTAGGAGTACATCTCAAAGACAGCACTTGTAGAACGCGTTGTTTATTGTA
CGGCTGAACCTACCTTATCGGCCCTTTTTACGCCGGCCCTTATTACGCCA
AGAGCCTAAAAATAACGCCAATAAGGGCCGGCGTTAAAAGGGCTGATAAG
GTATATATTTCATCTATTTCGCCGCCTGTCACAATTTGTTTGAACTGTCA
AAGCACAATCTAGTATCTGAGTATAAGGACACCCGATTCCACATATAATA
GTATAGGCAGGTTAACCCGGCTGAAGTTTTATCTGCAAGGGTTACTAATA
AATATTTTGCTTATCTTTACAGATGGAAAAAAGGCGACGCTCTTTCCCAT
TCGTGTTCCGTCGTTCCCGGACGCCGTTAGATTCTACCACGGATTCCCGT
CAAAACAACAACAATAACAACACAAATCGAAAAGTTGATCAACTCAAAGA
TCAACCTTCGCCAAAGTTGAAGTCAAAATCAAAAACACTTTCCCCGATCC
TTAAAAATCGTAAAAAATCGTCCACCGAAGATAACGCTAATCACTCCGCT
GCGGATTCCATAAATAATAATAAGAAAGAGAAGAGCGTAGGTAATGTGTT
ATTGAACGTGTTACCAGTAATTTCGCTGACATCAGCAGATAATAAGACGA
CCGAAGATCCTGAAGAGATGAAAAAAATTAGCCATAAAGAGCAGGCAAGC
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061649-exon-scaffold_36-1575043694:158942..158998 | TCONS_00061649-exon-scaffold_36-1575043694:158942..158998 | Clytia hemisphaerica | exon |
| TCONS_00061649-exon-scaffold_36-1575043694:155746..156126 | TCONS_00061649-exon-scaffold_36-1575043694:155746..156126 | Clytia hemisphaerica | exon |
| TCONS_00061649-exon-scaffold_36-1510915933:158942..158998 | TCONS_00061649-exon-scaffold_36-1510915933:158942..158998 | Clytia hemisphaerica | exon |
| TCONS_00061649-exon-scaffold_36-1510915933:155746..156126 | TCONS_00061649-exon-scaffold_36-1510915933:155746..156126 | Clytia hemisphaerica | exon |
| TCONS_00061649-exon-scaffold_36-1491911889:158942..158998 | TCONS_00061649-exon-scaffold_36-1491911889:158942..158998 | Clytia hemisphaerica | exon |
| TCONS_00061649-exon-scaffold_36-1491911889:155746..156126 | TCONS_00061649-exon-scaffold_36-1491911889:155746..156126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:155746..158998 - |
Blast
The following BLAST results are available for this feature:
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