TCONS_00061369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061369
Unique NameTCONS_00061369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061369 ID=TCONS_00061369|Name=TCONS_00061369|organism=Clytia hemisphaerica|type=transcript|length=337bp
GCTTTCCACGGAAAATGTTTTCGTGCTGGGTCCGTTCTAAACGTCCTCGT
GGTGCTCCGAGGTACACATATGGTCGATCTCTAtataaatgtttgaaaaa
atctgGCATTGATACTAATGTTTAGCATGCTTTGGCTTTGAATAAATTAG
AATGGAGAAATTTGATTCACTCTGTGAAAATTGATCCTTGATGATAATTA
TTTGACTAGTGTATTTCTTTTTACTAAGACAATACTATTTTATTTTCCGA
ATAGCATAgtgttttattagtttttgaaatttattttatgcGCTGTGATC
CTCATGCTTTAGGCATGTGGCCTATGCCCTTATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_357:87716..88052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061369 ID=TCONS_00061369|Name=TCONS_00061369|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at scaffold_357:87716..88052 (Clytia hemisphaerica)
AAAAATAAGGGCATAGGCCACATGCCTAAAGCATGAGGATCACAGCgcat
aaaataaatttcaaaaactaataaaacacTATGCTATTCGGAAAATAAAA
TAGTATTGTCTTAGTAAAAAGAAATACACTAGTCAAATAATTATCATCAA
GGATCAATTTTCACAGAGTGAATCAAATTTCTCCATTCTAATTTATTCAA
AGCCAAAGCATGCTAAACATTAGTATCAATGCcagattttttcaaacatt
tataTAGAGATCGACCATATGTGTACCTCGGAGCACCACGAGGACGTTTA
GAACGGACCCAGCACGAAAACATTTTCCGTGGAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038508XLOC_038508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061369-exon-scaffold_357-1491911889:87716..88052TCONS_00061369-exon-scaffold_357-1491911889:87716..88052Clytia hemisphaericaexon
TCONS_00061369-exon-scaffold_357-1510915933:87716..88052TCONS_00061369-exon-scaffold_357-1510915933:87716..88052Clytia hemisphaericaexon
TCONS_00061369-exon-scaffold_357-1575043694:87716..88052TCONS_00061369-exon-scaffold_357-1575043694:87716..88052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_357supercontigscaffold_357:87716..88052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.8315	0	0.941467	0.307026	10.0919	6.49796	2.13805	6.33845	2.33563	2.31444	5.33533	1.29214	0.921675	1.7229	0.629538	0.168898	1.04034	0.426526	0.589269	0.308314	0.535961	1.1764	0.635588	0	1.19033	1.59351	0.760101	0	0.307633	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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