TCONS_00061363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061363
Unique NameTCONS_00061363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061363 ID=TCONS_00061363|Name=TCONS_00061363|organism=Clytia hemisphaerica|type=transcript|length=847bp
caaaaggcggtaaaaactagagttctttcttcgtaaaaagggacctttaa
acatctatgtcgataattattttgctgtaaatctaagtaaatcattgttg
aatttgaaaaaatatgacgaagttattttataagaaccaacataaaattg
cgctatcacgctATGGCTGcaagctgactttcggccctgttGCGGTGTCA
GACTACACACAAGTAGGGGATGTTTGTAACTTTGCAAAATGATTTAGATC
AGCATGTCAGCTATCTTTCTTTCATTCATGTGATTACAAGAGGTTCAAAC
TGTAAATAGAAATTAAGACAAACATAAGTAACtagaaacaaataaataaa
aaagaactaAATTCTAAGACTAGAATGTGAAAAATGACTAAGTCCAGAAC
ATGACAAATGGCTAAGTCCAGATCCTGTAAGAAAGGCATCTGGGAAAATG
TATAGCTATCAAGAtatcaaaatatattgtaaagaaaaCTAAGAAAAACT
TAACCTAACTTAACCTGTGCCTCAACACTGGACTGATGAGCTGATGaggc
aaacaaaacaaaatgtggCCATGCAAACAGAAAAGCAAAAGGAGTGGCTG
AAAAACTTACCAAATTGGCCACATGTGTGAGCTGGTGAAAAGTAAAGCCA
ATGTGTACACAAACCAACATATAGACAAGTCAGTCAATGTAACAGAAAAT
GGTGCAAGtgtaaatgtaaacaaattctaagtctcaaaatttgtttcttc
ttctcatGTTTGACATGTTGACACTTTCATGTCTAACACAAGAGTGTCAC
AAAAAGTGAAATCAGCTCAATTTATAGTGTGTCAGAAAAAAGGAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_357:27697..28543

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061363 ID=TCONS_00061363|Name=TCONS_00061363|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at scaffold_357:27697..28543 (Clytia hemisphaerica)
CTCTCCTTTTTTCTGACACACTATAAATTGAGCTGATTTCACTTTTTGTG
ACACTCTTGTGTTAGACATGAAAGTGTCAACATGTCAAACatgagaagaa
gaaacaaattttgagacttagaatttgtttacatttacaCTTGCACCATT
TTCTGTTACATTGACTGACTTGTCTATATGTTGGTTTGTGTACACATTGG
CTTTACTTTTCACCAGCTCACACATGTGGCCAATTTGGTAAGTTTTTCAG
CCACTCCTTTTGCTTTTCTGTTTGCATGGccacattttgttttgtttgcc
tCATCAGCTCATCAGTCCAGTGTTGAGGCACAGGTTAAGTTAGGTTAAGT
TTTTCTTAGttttctttacaatatattttgataTCTTGATAGCTATACAT
TTTCCCAGATGCCTTTCTTACAGGATCTGGACTTAGCCATTTGTCATGTT
CTGGACTTAGTCATTTTTCACATTCTAGTCTTAGAATTtagttctttttt
atttatttgtttctaGTTACTTATGTTTGTCTTAATTTCTATTTACAGTT
TGAACCTCTTGTAATCACATGAATGAAAGAAAGATAGCTGACATGCTGAT
CTAAATCATTTTGCAAAGTTACAAACATCCCCTACTTGTGTGTAGTCTGA
CACCGCaacagggccgaaagtcagcttgCAGCCATagcgtgatagcgcaa
ttttatgttggttcttataaaataacttcgtcatattttttcaaattcaa
caatgatttacttagatttacagcaaaataattatcgacatagatgttta
aaggtccctttttacgaagaaagaactctagtttttaccgccttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038502XLOC_038502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061363-exon-scaffold_357-1491911889:27697..28543TCONS_00061363-exon-scaffold_357-1491911889:27697..28543Clytia hemisphaericaexon
TCONS_00061363-exon-scaffold_357-1510915933:27697..28543TCONS_00061363-exon-scaffold_357-1510915933:27697..28543Clytia hemisphaericaexon
TCONS_00061363-exon-scaffold_357-1575043694:27697..28543TCONS_00061363-exon-scaffold_357-1575043694:27697..28543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_357supercontigscaffold_357:27697..28543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89175	1.70433	1.79727	3.40924	4.43117	3.18978	1.79715	2.7006	1.31819	2.48053	1.4134	1.77816	1.48186	1.6012	0.836503	0.768543	1.98002	1.69921	3.05377	3.15113	1.90172	2.65679	1.23195	1.7094	1.98016	1.67894	1.16599	1.73739	1.3902	1.2507
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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