TCONS_00061325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061325
Unique NameTCONS_00061325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061325 ID=TCONS_00061325|Name=TCONS_00061325|organism=Clytia hemisphaerica|type=transcript|length=423bp
TCCAAAGATACCTCAAAACCCTGCTAAACCGAAACGAGATTAATGAAGAG
GAATACAAAGACATGCGTCCAAAGAATGCTAAGCCTGCCCGAGCCCATGG
TTTGCCTAAAATTCATAAACAATTTGATCATTTACCAAAGTTTCGACCAA
TTGTTGATACTACAGGTACGACACACTACTCTGTTGGTAAATACCTTACG
AACCTACTCAATCCACTCACCGTCAATGACTTCACGTTGAAAGATTCGTT
CGATGCTGCTGACAAAATAAACCAAATACCAAAAGAACTGTTTCATGATG
GGTACGTTTTTGTATCATTTGACGTCACTTCGTTGTTCACCAATGTTCCA
CTTTCCAAAACCATCAATATCATCATTGATCGCATTTACAACCAAAACTT
AGTCCAAACCACCATTTCGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00061325-protein

>TCONS_00061325-protein ID=TCONS_00061325-protein|Name=TCONS_00061325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
QRYLKTLLNRNEINEEEYKDMRPKNAKPARAHGLPKIHKQFDHLPKFRPI
VDTTGTTHYSVGKYLTNLLNPLTVNDFTLKDSFDAADKINQIPKELFHDG
YVFVSFDVTSLFTNVPLSKTINIIIDRIYNQNLVQTTISK
Run BLAST on NCBI

transcript from alignment at scaffold_355:220264..220686

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061325 ID=TCONS_00061325|Name=TCONS_00061325|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at scaffold_355:220264..220686 (Clytia hemisphaerica)
TCTTCGAAATGGTGGTTTGGACTAAGTTTTGGTTGTAAATGCGATCAATG
ATGATATTGATGGTTTTGGAAAGTGGAACATTGGTGAACAACGAAGTGAC
GTCAAATGATACAAAAACGTACCCATCATGAAACAGTTCTTTTGGTATTT
GGTTTATTTTGTCAGCAGCATCGAACGAATCTTTCAACGTGAAGTCATTG
ACGGTGAGTGGATTGAGTAGGTTCGTAAGGTATTTACCAACAGAGTAGTG
TGTCGTACCTGTAGTATCAACAATTGGTCGAAACTTTGGTAAATGATCAA
ATTGTTTATGAATTTTAGGCAAACCATGGGCTCGGGCAGGCTTAGCATTC
TTTGGACGCATGTCTTTGTATTCCTCTTCATTAATCTCGTTTCGGTTTAG
CAGGGTTTTGAGGTATCTTTGGA

Coding sequence (CDS) from alignment at scaffold_355:220264..220686

>TCONS_00061325 ID=TCONS_00061325|Name=TCONS_00061325|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_355:220264..220686 (Clytia hemisphaerica)
CTTCGAAATGGTGGTTTGGACTAAGTTTTGGTTGTAAATGCGATCAATGA
TGATATTGATGGTTTTGGAAAGTGGAACATTGGTGAACAACGAAGTGACG
TCAAATGATACAAAAACGTACCCATCATGAAACAGTTCTTTTGGTATTTG
GTTTATTTTGTCAGCAGCATCGAACGAATCTTTCAACGTGAAGTCATTGA
CGGTGAGTGGATTGAGTAGGTTCGTAAGGTATTTACCAACAGAGTAGTGT
GTCGTACCTGTAGTATCAACAATTGGTCGAAACTTTGGTAAATGATCAAA
TTGTTTATGAATTTTAGGCAAACCATGGGCTCGGGCAGGCTTAGCATTCT
TTGGACGCATGTCTTTGTATTCCTCTTCATTAATCTCGTTTCGGTTTAGC
AGGGTTTTGAGGTATCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038476XLOC_038476Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061325-proteinTCONS_00061325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061325-exon-scaffold_355-1491911889:220264..220686TCONS_00061325-exon-scaffold_355-1491911889:220264..220686Clytia hemisphaericaexon
TCONS_00061325-exon-scaffold_355-1510915933:220264..220686TCONS_00061325-exon-scaffold_355-1510915933:220264..220686Clytia hemisphaericaexon
TCONS_00061325-exon-scaffold_355-1575043694:220264..220686TCONS_00061325-exon-scaffold_355-1575043694:220264..220686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:220264..220686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.539356	0.812899	1.69117	1.48865	0	0	0	0.514947	0.67777	0.68152	0	0.110411	0.191898	1.00871	0.236768	0.607881	0.926886	0.249781	0	0.859796	0.326756	0.872347	0	0	0	0	0.51949	0.979425	0.593797	0.579893
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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