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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061279 ID=TCONS_00061279|Name=TCONS_00061279|organism=Clytia hemisphaerica|type=transcript|length=722bp
AACACAAGTTGTTGAAGAAAACACAAACTATAAATTCTTTGAACTTGTTG
ACAAAATCACCCGATCTGTTGAAAGACTTTGCTTTAATATTCTTTGAACT
TGTTGATAGACCCACTcaatttgttgaaagtatttgcTTTAAAATTCTTT
CTACCTGTTGACAAAGTTATTCAATTTGTTGGAATGGATCAGATTTGTTT
CACTGGCGAATCAACTTGCCATTCGTTCACCGGCCATATGTTGAAAGCCA
ACATGTGTTGTAATTGTATGAAAGACATTGCAAAACACCGTAAAGAAGTC
GTCGATAGTGAATCTTTGGTCAAGgcttTAGAGTGCACACAAAAAGGTGA
ACGTATTCCGAGCTTGATTTTGGAGAAGGACGAAGTTTTCGGTCACGGCA
AATTGTACCTTGGTGGTTTCAAAGCGTGCACCAGTAGAGAATTCATTACT
CATGAACAAGTAAGAGGAGTTGTCAATACTGTTGGGAATGGTCTCTTTGG
TTTGTTCGGTCGAAAATTTCAGAGTACATACGAAGAAGTCATGAAAACAA
ACCAAGTGGACTACATCGAAGTGGAATGGGAAGACAGTCTTGCTTTCCAT
ATACCGGAACATGAAATGAAGCATGTTCTCCGTCACATTCACAGCGTGCG
GACGAATGGAGGAGCAGTTCTGGTGCATTGTGCTCAGGGTAAATCTCGTT
CCACTACAGCAGTTGTGGCCTA Run BLAST on NCBI transcript from alignment at scaffold_355:73878..78026+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061279 ID=TCONS_00061279|Name=TCONS_00061279|organism=Clytia hemisphaerica|type=transcript|length=4149bp|location=Sequence derived from alignment at scaffold_355:73878..78026+ (Clytia hemisphaerica)
AACACAAGTTGTTGAAGAAAACACAAACTATAAATTCTTTGAACTTGTTG
ACAAAATCACCCGATCTGTTGAAAGACTTTGCTTTAATATTCTTTGAACT
TGTTGATAGACCCACTcaatttgttgaaagtatttgcTTTAAAATTCTTT
CTACCTGTTGACAAAGTTATTCAATTTGTTGGAATGGATCAGATTTGTTT
CACTGGCGAATCAACTTGCCATTCGTTCACCGGCCATATGTTGAAAGCCA
ACATGTGTTGTAATTGTATGAAAGACATTGCAAAACACCGTAAAGAAGTC
GTCGATAGTGAATCTTTGGTCAAGGTATGTTGGTTTTGTTTACTTCAATA
TattatttttgaagttttcgGCTCAACGAGCGTATTGGATATATTATATA
CCAAAAggttttcaaatattatgtAGAATGGAAATATCTTTGTTAGCAAG
GTCCAATCGAATGGAATTGGCTTATTTTGGTTCCACATGACTCGAATTAC
TTCCTTTGAAAGTTGAATTTTGAAAGTCTGAAAATCGGGAATTTGAGATT
TACGCATCAGTTTCAGCTCGTCGAACCAATAAACAAATTGGGTTGTTTGT
AAGGTTTCACCCATCAGGACTCACATTATTGCTGTTTTAATGTCATTGTA
AGCACTTTTATTGTgtcagaaaaaatttaaatagtACTATTGTATAGCCT
TTAAAGAGTACTATCAGAAAATGGTATGTTTCTTTAGATTTCTAGTTTGT
TCAATATGAAATTTAAATTCTAATCTTaagtatcttttcaacgagcacag
aCTCCTAATCTGATttatattctatcaaaagtttgaGCGTTCCTTGATGT
TTAGtatattgaattttcaatttattttttttttcaaaaggcttTAGAGT
GCACACAAAAAGGTGAACGTATTCCGAGCTTGATTTTGGAGAAGGACGAA
GTTTTCGGTCACGGCAAATTGTACCTTGGTGGTTTCAAAGCGTGCACCAG
TAGAGAATTCATTACTCATGAACAAGTAAGAGGAGTTGTCAATACTGTTG
GGAATGGTCTCTTTGGTTTGTTCGGTCGAAAATTTCAGGTGAGTTTTTTG
ACTTCAGTTTACTGTAGATGCTTTTCATATTGGGACTTGGAAAATCAACC
ATGTGGTGGTGGGACCTGAAATTTTAGGTGGACCTTGAACCCCCCATGCA
CAATATGACTTTTTATCAGGCAACTTCATTTACTATAAGGCAAAGGGTTT
GAATTTGGGTCTATATCTTGTGCgagcaaaatatttcttaaatgaTAACC
TTTTTATCCAGGGcacattttatgttttttgagaGTTACTGGATGACGCA
ATTATGTTggccggtagtatatggtagtTTTCAATTCTTTACTTAGATTC
TAGTTCTTTTCGAGGGGTAAaaactttatttgaaaataggTTTGCAACTC
CTTGTTTTATTCATGTCGGTTTtactttcaaaaattaaattttcaaactc
tTTCACTGCTTTTAAATCACATATCAACTCCCTGTACGATCTCACTCACT
ATgttacacgttttctttataagaacatccaaaatttttaaaagcctTGG
GATATTCTTAGCTTTTCGAGTTTTAAAGGCTAAAAATCTTCTGAACTTTT
TTCTTAGtttcaacattttgtgagtatttttgttcattttcctaggaaAA
TACTCTTAGGGGccaaataaaggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGggccca
caaagccttaaaatgttcttaacttgttcttatatttttgccatcgaagc
cttatgttcttataataatttgttcttaaaaaaagtgcattttttctCAC
CTGTCAGAGTACATACGAAGAAGTCATGAAAACAAACCAAGTGGACTACA
TCGAAGTGGAATGGGAAGACAGTCTTGCTTTCCATATACCGGAACATGAA
ATGAAGCATGTTCTCCGTCACATTCACAGCGTGCGGACGAATGGAGGAGC
AGTTCTGGTGCATTGTGCTCAGGTAAGGAGAAACGACACGATGACGGTTT
CTAGGCCAAACGAAACGTGGTTTTTATTCGCCAGTTAATGACATTATACT
TACTACTGGTTGTTTCAATTGACGTTAActaaaaatgggcttttccaaaa
aaaaaattgaatatagggGGTGGAGGACATAACGTTTCTgggaaatttac
cccctggacattgtgacttttgacccccccggacagcaggtctaagcccc
tggacaagcatcagttgaccccctggatattcaaaattaacctcaaacag
aacaaaattacccccaaacagagcaaattACCCCCCGGAAAAGGcaaatt
ttatagatttttcactaccgcTGGACacaatatcctccacccccatgtac
ggacattttctggacgAGCTCAATGCATTGAATCCATGGCGTTCTAAAAT
GAATTCAGAACGCCGTGATTGAATCTATCTTTTCTCCTTTTGAAAGgaga
caagacaagacaagatGACAAGGGCTTTACCCCCCCCCCGACCTTTACAT
ATCACCGGACAAAGCCATATCCGCCatatctttgatcggagttcgacttt
ttcgaatgtttggagcccgggttttcgggctctaaacatgcGATTTTTTG
ACGTCTCTTCTACATTTCGAAGCTACTGCAGTAGCGAAAAAATCGAATTG
CTTCTAATTTTCGagaatgaaaaatcccggtttttagtgaggtactCGCT
ATTGTAATGTTTACAATTACACTGCTTTTTAGTAGTGTTACCATTAGGGA
AACACTCtcaaaaaaactctgatcaaagatttttgcttgTTTGGAATTAA
GAAACTTTGTCCAAGGTAAATAAGGCTGgcttttacacgcttttttacaa
gactggtgttttttcatttcatcatggatattcttaactttttcgcgaaa
atcattctaaaatatacggtattcttaggttaagatcgaaattcaACCTA
GATTTAACATGTAATACACGCCTGGAGAATATTGAGCGTTACTGGGTATT
ATTGGCAATTTACAGgtgaaaatgctttaaaaatagcATTATTAGCTTTA
GTTGCTATATTCCataatggtgatattcttagcgtattcttaattttttg
gccattttcatcatggacattcttataaagtgtattcttaaaAACAAGCG
TGTAGTTatttaagggctacatacactacacaatatattgtcaggcaata
tattgatgatatattgctgaatgtcggcaatatattgaaaaggtgtccgc
aatatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtgtccgcaatatattgtcagctcgatttgcaatattccaacaata
aagggggattgtttacagaaagaaaattcctttttataatagagtaccag
ttgtttgcttcgtacattacggtccgcaaaccatattgtcgaatattgtt
cgtcaatatattgtgtattCTAAGTAGCCCTTTACACTGTTCTTTTCTCC
TCAACCAATCAGGGTAAATCTCGTTTCTCCTCAACCAATCAGGGTAAATC
TCGTTTCTCCTCAACCAATCAGGGTAAATCTCGTTCCTCCTCAACCAATC
AGGGTAAATCTCGTTCCTCCTCAACCAATCAGGGTAAATCTCTTTTCTCT
TCTCAACCAATCAGGGTAAATCTCGTTCCACTACAGCAGTTGTGGCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061279-exon-scaffold_355-1491911889:73878..74201 | TCONS_00061279-exon-scaffold_355-1491911889:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1510915933:73878..74201 | TCONS_00061279-exon-scaffold_355-1510915933:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1575043694:73878..74201 | TCONS_00061279-exon-scaffold_355-1575043694:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1491911889:74768..74965 | TCONS_00061279-exon-scaffold_355-1491911889:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1510915933:74768..74965 | TCONS_00061279-exon-scaffold_355-1510915933:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1575043694:74768..74965 | TCONS_00061279-exon-scaffold_355-1575043694:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1491911889:76085..76249 | TCONS_00061279-exon-scaffold_355-1491911889:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1510915933:76085..76249 | TCONS_00061279-exon-scaffold_355-1510915933:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1575043694:76085..76249 | TCONS_00061279-exon-scaffold_355-1575043694:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1491911889:77992..78026 | TCONS_00061279-exon-scaffold_355-1491911889:77992..78026 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1510915933:77992..78026 | TCONS_00061279-exon-scaffold_355-1510915933:77992..78026 | Clytia hemisphaerica | exon |
| TCONS_00061279-exon-scaffold_355-1575043694:77992..78026 | TCONS_00061279-exon-scaffold_355-1575043694:77992..78026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_355 | supercontig | scaffold_355:73878..78026 + |
Blast
The following BLAST results are available for this feature:
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