|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=transcript|length=1401bp
AAAATATAACATTGTCAAGATCTTATCTCTTATGaaaaaattataaCAAG
ACGGGTTATATATGACAAGGTATAAACGTGAGCTATGGATAAAGTTATAG
GAcaatcattcaaagaaaatGGATATTATACACCAATCAGCATTTTAACT
GCAGAAGAAGCTGCAAAAacattacaaaatttcaatctgTATAAAGACAC
AGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGCTTTCAAGGTCATT
TATTGATGAGATGGGTGTGGGATTTGATTCGTCATCCAAAAATTGTGTCA
GTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTTGCTGGGGTACAGA
TTTCAATATTAAACCTGGAAAATCTCAAGgATATTTTACTTGGCACCAAG
ACGCCACTTATTGCGGTTTGACGCCGATTAGCAAAATGTTGACAGCTTGG
ATTGCTATCACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTCTGCC
AAAAACACATTCAAAACAACTTGACCATATTGAAAAACAACAAGAACACA
ATATGTTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAG
AGGCTCTCCACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTTT
GCATCATAGCTATATGGTTCACGCTTCAGGACCTAATAAAACTGAAACAC
CAAGAATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAG
CCTCGTTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACA
ACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACG
ATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTAT
TTCCTCGGAAAATCGATCAAATCCTTCAAGTAGATACAGTTGAACTTaaa
tctctctctaattcaatcttCAAGGGGCCAAAAATtctcttcgaattaga
gaaatattcgaattagagagagtaatTCTAAACCACTTTTCTCCTGAGCA
GGCCATTTTTTAAGTTCGaaatacagaaagattcgaataattaGAGAGAT
TTACTTGTACTACAATACACAAACATTATCAGGAAACAAACTTTACatgg
tttttataagaataattttttgtAAGCCTCATTATGTAGTAAAATTAGTT
CGATTCAAGTTAATGATATGAAAGTTTCATCAAATcatattacatgtttt
ttataagcattccACTTaacatatctaggctcagatatggcaaaAGTTTA
AGCATATGGTAAACATTACTTTGGactatattttctgattttggcaaatt
tgatTAGAATATAGGCATCATTCtagcatttttcagctttgcCTATCTCT
C Run BLAST on NCBI protein sequence of TCONS_00061207-protein >TCONS_00061207-protein ID=TCONS_00061207-protein|Name=TCONS_00061207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MDKVIGQSFKENGYYTPISILTAEEAAKTLQNFNLYKDTVGTNGKIIGDF
RFQGHLLMRWVWDLIRHPKIVSVVKETLGTENILCWGTDFNIKPGKSQGY
FTWHQDATYCGLTPISKMLTAWIAITPSTTESGCLCFLPKTHSKQLDHIE
KQQEHNMLSLGQEIADQNFIEKRLSTQVYAELVPGQMSLHHSYMVHASGP
NKTETPRIGLAIRYLAAEVRKEPRFPSMERVTLISGIKQHDFFEYEHAPV
EDFSDDAFQEHKLSIERKKENYFLGKSIKSFK Run BLAST on NCBI transcript from alignment at scaffold_354:903803..906294- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at scaffold_354:903803..906294- (Clytia hemisphaerica)
AAAATATAACATTGTCAAGATCTTATCTCTTATGGTACGTTCAATAATTA
TGTCTTGTCTCAAAATATCAAAGAGTGTTTTTTTGTCAGTTTTGCATGTA
AGCCAGTGGCGTGGTGGCAGGGGGGGGCAGGGGGCCAGGCCCCCCCCCCA
GCGGAGCCCTTTTGAGAAGGGGCGCCCAAAAATAAGGGACGTTAAGAAGG
ATTTTTCAGACGCCCATATCGAAAGATTGACAAATGAAAAAACAAAAATG
GCGCCCCTCATCACCTCAAAAACTCAAAATTTTCTGGCTCGCTTCGCTCG
CAAACTCCCTATTTTGTGTTCATAATGAGCGTATAGAGAGGGGCGCCAAA
TAAAAATAGTCTTTGAAAAGGGCGCCATATTTGCCTTGGCCACCCCAGAG
AAATTTTCCCACCACGCCACTGTGTAAGCTTTTCATATAAAAGCAGCCAT
GTTGATAAAAGTGTATTAATGATAGATCTATCATGTTTACTTTTCAGAAA
AAATTATAACAAGACGGGTTATATATGACAAGGTATAAACGTGAGCTATG
GATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATACACCAAT
CAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAATTTCAATC
TGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGC
TTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTCGTCATCC
AAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTT
GCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAGGTATCAGT
TGTTACTATAGAGAGTTCTTTTTTAATAATTTTCCCCTGTCACAAACGCC
CGCGTGATAATACTCTTGTCCGTCCGTCTCCACAGGTTAAATTTTTAGTT
TAGTTTAGTTTCTTGTTTCTATCCACATTGCCGAAAAATTCTAACCTACT
AAATGAGACTAAAGTGGTGTTTCTAAACACCTCTGTATCATAAAAAGAAC
TGCTTTATTTCTAATACACGTTTTTTTTTTTTAAGAAACACACTTTTAAG
AAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGAAACATG
CTAAGGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAACATTT
TTTAATTCGGTTTTTTAAGAACCTTCCAATCCAGCCTTCCATGAGGCTGA
TTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAAGCGCAAAAGG
CCGATTTTTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAA
ATAAAAAAAACGTGTACCATTTACGGGGTGCATAGCTCAAACTTTGACTG
AACATTTTTTTTCTCTTTAGGATATTTTACTTGGCACCAAGACGCCACTT
ATTGCGGTTTGACGCCGATTAGCAAAATGTTGACAGCTTGGATTGCTATC
ACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTCTGCCAAAAACACA
TTCAAAACAACTTGACCATATTGAAAAACAACAAGAACACAATATGTTAT
CTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAGAGGCTCTCC
ACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTTTGCATCATAG
CTATATGGTTCACGCTTCAGGACCTAATAAAACTGAAACACCAAGAATCG
GTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAGCCTCGTTTT
CCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACAACATGATTT
TTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACGATGCTTTTC
AAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTATTTCCTCGGA
AAATCGATCAAATCCTTCAAGTAGATACAGTTGAACTTAAATCTCTCTCT
AATTCAATCTTCAAGGGGCCAAAAATTCTCTTCGAATTAGAGAAATATTC
GAATTAGAGAGAGTAATTCTAAACCACTTTTCTCCTGAGCAGGCCATTTT
TTAAGTTCGAAATACAGAAAGATTCGAATAATTAGAGAGATTTACTTGTA
CTACAATACACAAACATTATCAGGAAACAAACTTTACATGGTTTTTATAA
GAATAATTTTTTGTAAGCCTCATTATGTAGTAAAATTAGTTCGATTCAAG
TTAATGATATGAAAGTTTCATCAAATCATATTACATGTTTTTTATAAGCA
TTCCACTTAACATATCTAGGCTCAGATATGGCAAAAGTTTAAGCATATGG
TAAACATTACTTTGGACTATATTTTCTGATTTTGGCAAATTTGATTAGAA
TATAGGCATCATTCTAGCATTTTTCAGCTTTGCCTATCTCTC Coding sequence (CDS) from alignment at scaffold_354:903803..906294- >TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_354:903803..906294- (Clytia hemisphaerica)
GATATTTTACTTGGCACCAAGACGCCACTTATTGCGGTTTGACGCCGATT
AGCAAAATGTTGACAGCTTGGATTGCTATCACACCTTCAACAACCGAAAG
TGGTTGTTTATGCTTTCTGCCAAAAACACATTCAAAACAACTTGACCATA
TTGAAAAACAACAAGAACACAATATGTTATCTCTTGGTCAAGAAATAGCT
GATCAAAATTTCATCGAAAAGAGGCTCTCCACACAAGTCTACGCAGAACT
TGTACCAGGACAAATGTCTTTGCATCATAGCTATATGGTTCACGCTTCAG
GACCTAATAAAACTGAAACACCAAGAATCGGTTTAGCAATTCGATATTTA
GCAGCAGAAGTTCGTAAAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAAC
TCTGATCAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCC
CTGTGGAAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATC
GAGCGAAAAAAGGAGAATTATTTCCTCGGAAAATCGATCAAATCCTTCAA
GTAGATGGATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATA
CACCAATCAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAAT
TTCAATCTGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGA
TTTTCGCTTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTC
GTCATCCAAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAAT
ATTCTTTGCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAGG
ATATTTTACTTGGCACCAAGACGCCACTTATTGCGGTTTGACGCCGATTA
GCAAAATGTTGACAGCTTGGATTGCTATCACACCTTCAACAACCGAAAGT
GGTTGTTTATGCTTTCTGCCAAAAACACATTCAAAACAACTTGACCATAT
TGAAAAACAACAAGAACACAATATGTTATCTCTTGGTCAAGAAATAGCTG
ATCAAAATTTCATCGAAAAGAGGCTCTCCACACAAGTCTACGCAGAACTT
GTACCAGGACAAATGTCTTTGCATCATAGCTATATGGTTCACGCTTCAGG
ACCTAATAAAACTGAAACACCAAGAATCGGTTTAGCAATTCGATATTTAG
CAGCAGAAGTTCGTAAAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAACT
CTGATCAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCCC
TGTGGAAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCG
AGCGAAAAAAGGAGAATTATTTCCTCGGAAAATCGATCAAATCCTTCAAG
TAGATGGATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATAC
ACCAATCAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAATT
TCAATCTGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGAT
TTTCGCTTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTCG
TCATCCAAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAATA
TTCTTTGCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061207-exon-scaffold_354-1575043694:906261..906294 | TCONS_00061207-exon-scaffold_354-1575043694:906261..906294 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1575043694:905453..905797 | TCONS_00061207-exon-scaffold_354-1575043694:905453..905797 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1575043694:903803..904824 | TCONS_00061207-exon-scaffold_354-1575043694:903803..904824 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1510915933:906261..906294 | TCONS_00061207-exon-scaffold_354-1510915933:906261..906294 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1510915933:905453..905797 | TCONS_00061207-exon-scaffold_354-1510915933:905453..905797 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1510915933:903803..904824 | TCONS_00061207-exon-scaffold_354-1510915933:903803..904824 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1491911889:906261..906294 | TCONS_00061207-exon-scaffold_354-1491911889:906261..906294 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1491911889:905453..905797 | TCONS_00061207-exon-scaffold_354-1491911889:905453..905797 | Clytia hemisphaerica | exon |
| TCONS_00061207-exon-scaffold_354-1491911889:903803..904824 | TCONS_00061207-exon-scaffold_354-1491911889:903803..904824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:903803..906294 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008775 | Phytyl_CoA_dOase |
Blast
The following BLAST results are available for this feature:
|
