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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061040 ID=TCONS_00061040|Name=TCONS_00061040|organism=Clytia hemisphaerica|type=transcript|length=1478bp
cTATTCCATGCCGTATAAAGTCAACCCAGAAACTGGTTTGATAGATTACG
ACAAGCTTTTGGAAACTGCAAAACTTTTCCAACCAAAGATCATTATTGCT
GGTGCCAGCGCTTACTCTCGTCTCATCGACTACGCACGATTCCGTAAAAT
CGCTGACGAAGTAGGTGCCCTCCTCATGACAGACGTTGCACACTATAGTG
GTCTGGTGGCAGCAGGTgccattcccagtccttttgaGCACTCTCACATT
GTGACTACTACGACGCATAAAAGTTTACGCGGAGCACGCTCAGGAATGAT
CTTTTATAGGATTGGACAAAAATCTGTTGACAAATCTGGGAAACCGGTCA
TGTATGACTTCGCTGATCGAATCGATATGGCTGTCTTCCCATCACTACAA
GgtgGACCACACAATAACAACATTGCAGCAGTTGCAGTTGCATTGAAGCA
AGCTCTGACCCCAGAATTCAAAGAATACGCTTTACAAGTGATTAAGAATG
CTCAAGCAATGGCTGATCTATTTACCAAGAAAGGTTACAAAGTGGTCTCA
GACGGCACAGACACTCATATGTTTTTACTGGACTTCCGTGGCCAAGCTAC
GGACGGTGCAAAAGTTGACATCATGTTGGAAATCTGTAGTATGAGTGTTA
ATCGGAACACCGTTCCCGGTGACAAAAGTGCGCTCCGGCCGAGTGGCATC
CGCATTGGTACATCTGCTTTGACGTCacgaaatttctttgaaaaagatgt
cgaaaagGTCGTCGAGTTCATCGAAGAAGCAATTAAATTGTCCATCGAAG
TTTCCTCGTCCCTTGGCAAATGTACCCTCAAGCAATACAAAGAGGCCTTA
CAGTTGGAAACTTGGAAGGTCAAAGTTGACGATTTACGGCAAAGAGTTGA
GGCATACGCCTTGACCTTCCCTATGCCTGGCCCTCCACCACTAGAATAAA
CATTGACTACAACGGGGACATTTCAAGAGCTCGTCTCACGTACGTAAGCT
TTTCTACAGGTTTTGACATTTAATGACTCTTGGGATTGGATTAATGCGTT
TCTTTGTCACGGGATTGGATACACAAAACTTNATGACTCTTGGGATTGGA
TTAATGCGTTTCTTTGTCACGGGATTGGAtacacaaaactttaaaaagat
attttttatcgtttttttataatttttttaatttatattttacTTTATGG
GTATTTTGTATAACAAACCTTTCTGTTTattgttctttcattttctataT
ATCCTTCAATTAACATTAATGAGGGATAATAGacatcggagttttttatt
tttataaaaaagcgatgcattgtagGATTGTTTTGGGGGTATTACGATAG
AATTTCGTCGaggaatagacgatatcggatttagataaatgcaatgcatt
ctggtttctagggactctcaaaggaattataatctattataattgatcta
ttataattcctttgagagtccctagaaa Run BLAST on NCBI transcript from alignment at scaffold_354:168559..174441+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061040 ID=TCONS_00061040|Name=TCONS_00061040|organism=Clytia hemisphaerica|type=transcript|length=5883bp|location=Sequence derived from alignment at scaffold_354:168559..174441+ (Clytia hemisphaerica)
cTATTCCATGCCGTATAAAGTCAACCCAGGTAAGGAGATTTTCATGTTTT
GTAAACTTACATTTTCTTGATCCCCAAAAATATTGGTTTATCTTACAAGA
AAAGTCATATATAATGTATATGCTATGTGTATAAAATATATGAATAACTA
ACAACTCGAACAGATACGGGAAGAAGGACTCATCGGAAGGAGTAAGGAAA
ACTAAATGACGCTCGGAATCAGAATATTGAGATTTGACGTTCGGAAGTTT
TGTTTGGAAGTTTttaatttccaccattatggaagcaaacgttcgaatat
GTAGAGTCGATCCCTTATACAAAttgaacgtttgcttccatgtTGGCGga
agttacgtaatttacaaaaacgtaaaaaccacTATAATTTTTCTGGAATC
TCGACATGAAACCTGTTTGAAGGTCACATTATTTTAATGATAATGAAGAA
TCTGATGGCGTTAATTTGGTTAGCTTCATCTGACTGAATCGCATAATACT
AACTAATCTCCCAGGCTACTAGAagtattgtttttgtttttgctattGAG
GTCCTTATTTCAATTACTCTAAAATAGTACTCTCTCGATTACTAGTAGAT
CCAAAACGGAAAAACTTCTATTCAAATAAACGAGCGTCGGCATTCTGACC
TGAAGGTCCTTGCAAAATCCTTGCGACAACATAATGTTTTAATTTATCCT
CATAGAAACTGGTTTGATAGATTACGACAAGCTTTTGGAAACTGCAAAAC
TTTTCCAACCAAAGATCATTATTGCTGGTGCCAGCGCTTACTCTCGTCTC
ATCGACTACGCACGATTCCGTAAAATCGCTGACGAAGTAGGTGCCCTCCT
CATGACAGACGTTGCACACTATAGTGGTCTGGTGGCAGCAGGTgccattc
ccagtccttttgaGCACTCTCACATTGTGACTACTACGACGCATAAAAGT
TTACGCGGAGCACGCTCAGGAATGATCTTTTATAGGATTGGACAAAAATC
TGTTGACAAATCTGGGAAACCGGTCATGTATGACTTCGCTGATCGAATCG
ATATGGCTGTCTTCCCATCACTACAAGGTAAATGTTAAATATCGTTTCat
cacaaagaaaaataattcctgatataagATTTAGAAATAGAAAAGAGGAT
AGACTCTCTATTTTCGGCACCACAGACAGCCACCAGATTAACATACTTAC
TTATAAAAAGCATTATCCAGATGTTAGTGGACGGAACATAGATACACATA
CTGTACTATAATAATTTAGAGATTGCTCTCAAGTGTAAGATACTTTGATT
ACAATAGGGccataaaattttcatttactaattttttttaaataggtgGA
CCACACAATAACAACATTGCAGCAGTTGCAGTTGCATTGAAGCAAGCTCT
GACCCCAGAATTCAAAGAATACGCTTTACAAGTGATTAAGAATGCTCAAG
CAATGGCTGATCTATTTACCAAGAAAGGTTTGTTTAGATTATTTTCCACT
AAGGCACACCAACATATAAGGGATAGTCGAGAAGCCCTAACAACCAGTTC
CAAACacctgacctttatatatcccttgaccaagctatatccgcaatctt
tgatcggagtatTTTTGGAGTTgatacccgagaagaagccattgcaatgt
taaaaattaacgtctaacggcgctacatcatcatgTGTTCGAGGAAAAGT
AGAAAAGTGGCTTTACCGAAGCAATTTCTGAGTTTTTACGATTTAGGCGC
TTTTGATTGTTAGGGggacttttggattgttataggtaagtACGGAATAT
TCGAAATAAGTGGCAAACACCTGGTCTTTTTGTGGGTGCTttcgtataaa
acattacgtcattaatATCACTAATTGACCTTTCTAGTTCTAAATAGTCG
CTCGAGATATTCGTCGCAAAGACATCATCACTGTGCAAAATAATGATTGA
CCTTTCTATTCATCCGGTTTCCCACTCGAATTTGGGCATGGTCTATTAGC
AATGTTAAGTTTGATTGGTGTATTTtgcccattgagtttaaaggaAGAGA
GGAATCTCTAACCTTTATCAAGAAAgtaaaaaagtgaaaccttcAGATTT
GTACTGCTTTTAGAATGATGGATTCAATCTAGCGCTGCCTTTGTTTTCAC
CCGTcacatttttcgaaatctggcgaAGGATTTTACTTCAAAAGTGGCAT
CTGGTGAAAGAACACCCAATAAGTTGCTTcattacagtatgtggccccca
aaacggcgatcaaatttgaaatttctctcaaatctagaggaaaagagatt
ttacaaaaatctttgctgcaagaaaaactttaacatctctaatttatttc
ctggaagttctttttcaaaattttcaatttcaacaatatttttcaatcgc
ttaaagataggtaacttttttctaatggcccccaaagcggaggtttgaaa
ttttagcgatttctcgagatagctttaagatatgaatacaaaattctgac
catagttttgaaatattatttaggttttgggcataaatttatttgataaa
atttttacagtatacccctggttgtcaaaatgcaggttgggggcccccaa
aacggaggtttgaaattttagcgatttctcgagatatctttaagatatga
atacaaaattttgaccatagttttgaaatattatttaggttttgggcata
aatttatttgataaaatttttacagtatacccctggttgtcaaaatgcag
gttgggggcccccaaaacggaggtgtagttaaaatcaaattattaagcac
agtggtaatagggggaaaaactatgaacatatttgtgttttcccttaaat
ttacgggTTTATttgggttttgggcataaatttatttgataaaattttta
cagtatacccctggttgtcaaaatgcaggtttggggcccccaaaacggag
gtgtagttaaaatcaaattattaagcacagtggtaatagggggaaaaact
atgaacatatttgtgttttcccttaaatttacgacccgatggatgcaaaa
tttatgatttttttgaaatatttcaagattttcgatattgcaaagtccaa
actgaaaatttagaaattttcaaaatgacaattttgatttaacaacgtct
taatcaagtttttaaaaacaaatctcttatgaaaatagtttcattcatgt
atggaatatacgctgtgaaaattttagaaaaaaagcttaactgaaactga
aaatattaagctttaaagatatttttctcctatattttgcaaaaaaatga
cagaatttgccgttttttccgattcagcgaaaatttttatatataatgtt
aattttttgttataaactattaactcaggGTGaaaggaatagaattccaa
gatttttagctttttctcatatttagaattttcggttttgtcaatgctga
ttctagggctccaaaatactggttgaccttcaagatgctatatcttttac
ccagcctctaaagtcacagatgtatttgcattttctaaatggcattaggt
gtagaaagtttcctataccccgttttcttaacttgttttcactatccaag
gagttagagtgagttatatgcaattttcatctaattttggtgttaaaata
tttcctttagacgcaaatatgttattttgaatctgtctcaaaccagcaaa
accatgctcatttttaagtataaccatcattctttcaaaataaacaaaaa
ttgtttaattctgataaatctacaagtcaatcttcattttaatgaaaacc
tccgtttcgggggccgtctccgttttgggggccatatactgtacccATCC
AAAAATTTCAACTCGAGCCcacttacacgcttttttaagaatatcttcaa
ttgaaatatcagggtgaaaattggcaaaattgtaagaataccctaagaat
accctctagggtgaatttcacagaatttgataagaatacagtcattttgt
atttggttaacagaaaaaactgcttcttttgttagagataaaattgaaac
tttgagaaagaaaaatgtaattttaacctaaatgttcactcaaaactctc
aaattgatcatttctcatgtttgtgaAAAAGTCGAGTCTAAAAaggtaag
aatacgttaagaatatttcaccctcatatttggcactttcttaataAGAA
TACTTGACCATGATCCAAagtacaccattcttataaaaaaagtgtataag
aGTATAAAGTCAATAATTTAACCTTCTTTGaccagaaaatcttttttcat
tctCTTCCGCTACAGGTTACAAAGTGGTCTCAGACGGCACAGACACTCAT
ATGTTTTTACTGGACTTCCGTGGCCAAGCTACGGACGGTGCAAAAGTTGA
CATCATGTTGGAAATCTGTAGTATGAGTGGTGAGTTCCTTTTAAATTCCT
TCCAGCTTTTTAATAGTCACTGGCTTTTTTTGTAAGTCTTGTTAACGATT
TATTTCGAATGTGGCTCAAGTTTCACTTCATAGCTTATGAAAGGTTTCTG
ATGGCACCGCTGTGGTTAACACTTTAAGTACCACTCAGCTAAATTTCGTT
CTCAAGGATTCCggaaataattttgattgagGATCTTATTCAAAAATGGC
ATCTCCAAAATTCCTTTTAACTAACCCATGGCATTTTTAAAGTAAGTTTA
CAACGAAAATAAGGAAATGGGGTGATTTGTTAAGTATCAACCACCTTATG
CCGAGCGATGGCCGAAAATTGGCGCTTAGGCGTTTTCCAATGATATTAGC
ATGTTGTTGGgaacattttcacaaaaaattaacCTCACAGCTAGATAGCT
GACTTTGTAATATCCAAAAAAGGGTATGGTTTGTTAAAAGCCAAAAATTT
CACTGGCTAAGGTACGGAAAGAACAATAAATTGAACCTTACTTTGAAATA
TTTACACCTTATCGGGGAANTTGGCTAAGGTacggaaagaaaaataaatt
aaactttactttgaaatatttacaactTGTATTCACTCTTCCCTTCTCTT
AGTTAATCGGAACACCGTTCCCGGTGACAAAAGTGCGCTCCGGCCGAGTG
GCATCCGCATTGGTACATCTGCTTTGACGTCacgaaatttctttgaaaaa
gatgtcgaaaagGTCGTCGAGTTCATCGAAGAAGCAATTAAATTGTCCAT
CGAAGTTTCCTCGTCCCTTGGCAAATGTACCCTCAAGCAATACAAAGAGG
CCTTACAGTTGGAAACTTGGAAGGTCAAAGTTGACGATTTACGGCAAAGA
GTTGAGGCATACGCCTTGACCTTCCCTATGCCTGGCCCTCCACCACTAGA
ATAAACATTGACTACAACGGGGACATTTCAAGAGCTCGTCTCACGTACGT
AAGCTTTTCTACAGGTTTTGACATTTAATGACTCTTGGGATTGGATTAAT
GCGTTTCTTTGTCACGGGATTGGATACACAAAACTTNATGACTCTTGGGA
TTGGATTAATGCGTTTCTTTGTCACGGGATTGGAtacacaaaactttaaa
aagatattttttatcgtttttttataatttttttaatttatattttacTT
TATGGGTATTTTGTATAACAAACCTTTCTGTTTattgttctttcattttc
tataTATCCTTCAATTAACATTAATGAGGGATAATAGacatcggagtttt
ttatttttataaaaaagcgatgcattgtagGATTGTTTTGGGGGTATTAC
GATAGAATTTCGTCGaggaatagacgatatcggatttagataaatgcaat
gcattctggtttctagggactctcaaaggaattataatctattataattg
atctattataattcctttgagagtccctagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061040-exon-scaffold_354-1491911889:168559..168587 | TCONS_00061040-exon-scaffold_354-1491911889:168559..168587 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1510915933:168559..168587 | TCONS_00061040-exon-scaffold_354-1510915933:168559..168587 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1575043694:168559..168587 | TCONS_00061040-exon-scaffold_354-1575043694:168559..168587 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1491911889:169264..169635 | TCONS_00061040-exon-scaffold_354-1491911889:169264..169635 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1510915933:169264..169635 | TCONS_00061040-exon-scaffold_354-1510915933:169264..169635 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1575043694:169264..169635 | TCONS_00061040-exon-scaffold_354-1575043694:169264..169635 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1491911889:169904..170035 | TCONS_00061040-exon-scaffold_354-1491911889:169904..170035 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1510915933:169904..170035 | TCONS_00061040-exon-scaffold_354-1510915933:169904..170035 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1575043694:169904..170035 | TCONS_00061040-exon-scaffold_354-1575043694:169904..170035 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1491911889:172874..172987 | TCONS_00061040-exon-scaffold_354-1491911889:172874..172987 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1510915933:172874..172987 | TCONS_00061040-exon-scaffold_354-1510915933:172874..172987 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1575043694:172874..172987 | TCONS_00061040-exon-scaffold_354-1575043694:172874..172987 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1491911889:173611..174441 | TCONS_00061040-exon-scaffold_354-1491911889:173611..174441 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1510915933:173611..174441 | TCONS_00061040-exon-scaffold_354-1510915933:173611..174441 | Clytia hemisphaerica | exon |
| TCONS_00061040-exon-scaffold_354-1575043694:173611..174441 | TCONS_00061040-exon-scaffold_354-1575043694:173611..174441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:168559..174441 + |
Blast
BLAST of TCONS_00061040 vs. Swiss-Prot (Human)
Match: GLYM (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 368.622 bits (945), Expect = 2.255e-121 Identity = 178/304 (58.55%), Postives = 236/304 (77.63%), Query Frame = 2
Query: 5 SMPYKVNPETGLIDYDKLLETAKLFQPKIIIAGASAYSRLIDYARFRKIADEVGALLMTDVAHYSGLVAAGAIPSPFEHSHIVTTTTHKSLRGARSGMIFYRIGQKSVD-KSGKPVMYDFADRIDMAVFPSLQGGPHNNNIAAVAVALKQALTPEFKEYALQVIKNAQAMADLFTKKGYKVVSDGTDTHMFLLDFRGQATDGAKVDIMLEICSMSVNRNTVPGDKSALRPSGIRIGTSALTSRNFFEKDVEKVVEFIEEAIKLSIEVSSSLGKCTLKQYKEALQLET-WKVKVDDLRQRVEAYA 910
SMPYK+NP+TGLIDY++L TA+LF+P++IIAG SAY+RLIDYAR R++ DEV A L+ D+AH SGLVAA IPSPF+H+ IVTTTTHK+LRGARSG+IFYR G K+VD K+G+ + Y F DRI+ AVFPSLQGGPHN+ IAAVAVALKQA TP F+EY+LQV+KNA+AMAD ++GY +VS GTD H+ L+D R + DGA+ + +LE+ S++ N+NT PGD+SA+ P G+R+G ALTSR F E D +VV+FI+E + + +EV S K L+ +K L ++ ++ +LRQRVE +A
Sbjct: 192 SMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK--LQDFKSFLLKDSETSQRLANLRQRVEQFA 493
The following BLAST results are available for this feature:
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