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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060995 ID=TCONS_00060995|Name=TCONS_00060995|organism=Clytia hemisphaerica|type=transcript|length=2657bpRun BLAST on NCBI protein sequence of TCONS_00060995-protein >TCONS_00060995-protein ID=TCONS_00060995-protein|Name=TCONS_00060995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp MASSSDHHMGQETMKVSRKLHGMNRDRLVTELRNDENTKSGIVVIQGGESRun BLAST on NCBI transcript from alignment at scaffold_352:98585..111457+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060995 ID=TCONS_00060995|Name=TCONS_00060995|organism=Clytia hemisphaerica|type=transcript|length=12873bp|location=Sequence derived from alignment at scaffold_352:98585..111457+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_352:98585..111457+ >TCONS_00060995 ID=TCONS_00060995|Name=TCONS_00060995|organism=Clytia hemisphaerica|type=CDS|length=23568bp|location=Sequence derived from alignment at scaffold_352:98585..111457+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060995 vs. Swiss-Prot (Human)
Match: PEPD (Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3) HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0 Identity = 297/479 (62.00%), Postives = 366/479 (76.41%), Query Frame = 3
Query: 267 ASSSDHHMGQETMKVSRKLHGMNRDRLVTELRNDENTKSG-IVVIQGGESETLHSSDREVAFRQESYFHWAFGCREPDCYGAIEVDTGRCILFVPELPQEYIVWMGQIHPKEHFQKLYEVDEVYFTNEIAKVLEDKKPKTLLTLRGRNTDSGKYTKEAAFDGISNFTVNNEILFPVMSECRVFKTEYELDVIRYANKISSEAHKEVMKHIRPGMTEYQLESLFQHYCYARGGCRFVSYTCICGSGTNSATLHYGHAGAPNDKLIQDGDMCLFDMGGEYYCYTSDITCSFPANGKFTEQQKGIYNAVLKSSRAVLNSVKPGVSWKEMHLLADKTNLEEMKKLGIVQGDVDEMMKVRLGAVFMPHGLGHFMGCDVHDVHGYPDGDKEHRPKEEGLKSLRTTRTLQQSMVLTIEPGIYFIEQWIRRALANPAQACFIVQNVVEQYFNFGGVRIEDDIAVTEEGCELMTNVPRTVEEIESLMA 1700
A+ +G ET+KV L +NR RL LR + ++G IVV+QGGE + +D V FRQES+FHWAFG EP CYG I+VDTG+ LFVP LP + WMG+IH KEHF++ Y VD+V + +EIA VL +KP LLTLRG NTDSG +EA+FDGIS F VNN IL P + ECRVFKT+ EL+V+RY NKISSEAH+EVMK ++ GM EY+LESLF+HYCY+RGG R SYTCICGSG NSA LHYGHAGAPND+ IQ+GDMCLFDMGGEYYC+ SDITCSFPANGKFT QK +Y AVL+SSRAV+ ++KPGV W +MH LAD+ +LEE+ +GI+ G VD M++ LGAVFMPHGLGHF+G DVHDV GYP+G + R E GL+SLRT R LQ MVLT+EPGIYFI+ + ALA+PA+A F+ + V++++ FGGVRIE+D+ VT+ G EL+T VPRTVEEIE+ MA
Sbjct: 4 ATGPSFWLGNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVE--RIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMA 480 The following BLAST results are available for this feature:
BLAST of TCONS_00060995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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