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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061011 ID=TCONS_00061011|Name=TCONS_00061011|organism=Clytia hemisphaerica|type=transcript|length=4601bpRun BLAST on NCBI protein sequence of TCONS_00061011-protein >TCONS_00061011-protein ID=TCONS_00061011-protein|Name=TCONS_00061011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=852bp MIFDXVISTSVYTSEQLAIMSLDDIRSHLKDLTGVFSAPMNQSNEKVRLRRun BLAST on NCBI transcript from alignment at scaffold_352:86..16372- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061011 ID=TCONS_00061011|Name=TCONS_00061011|organism=Clytia hemisphaerica|type=transcript|length=16287bp|location=Sequence derived from alignment at scaffold_352:86..16372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_352:86..16372- >TCONS_00061011 ID=TCONS_00061011|Name=TCONS_00061011|organism=Clytia hemisphaerica|type=CDS|length=28149bp|location=Sequence derived from alignment at scaffold_352:86..16372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061011 vs. Swiss-Prot (Human)
Match: ULK4 (Serine/threonine-protein kinase ULK4 OS=Homo sapiens GN=ULK4 PE=1 SV=2) HSP 1 Score: 352.058 bits (902), Expect = 2.542e-100 Identity = 228/765 (29.80%), Postives = 415/765 (54.25%), Query Frame = 2
Query: 1970 RQKMNIVAYLITAVRVEEVANSFLKDALVKCFLNDLKVASNQDLKMRIARLLSVVASNATSIDPQFKMGDVFTVVSNQLKQNFRNTRLRHAFLPVIGEFLFYAATQEENEARLISSWEPPGAVFTIITRCLHLLDGEE-VTRLMAAKIIENITSTTGRYCKKLVNNDVGLGLWNLYTHSSMDNVKETAASALCRLCMHSTVVIQHVSDRAGFDQFVSGATLGSLKTQQSFVTILVSLLSSANHLKRILGDRQLLTKLVRNLEGHSLILKGKIYLLLAEMCMRSHPTLLTCCQQKLMIYVERDSKRALNSSGRDNSGLTEYLHQCLAIVVSNVLKIVPRIQEDIIHILDTISGRHHPNPAQVKQLKSLLPLFDIFMHLITSSVFRKR-MGDNFIASIGIFMKRVQKIHTGEINLSNPSVRNLGESLTNTMFSMVEAIAQHPHMLLHGHRVFINEVLPELSEFFDESDGNIKILCLKLFTEVSAFYLESEENEGL-GTSADQRTLSKINLLKVINKGFIPRFGNLLQDQIPFPSYSLKLMRACVEKSNDMAETLLQDTAVLSMLFSILKGNRTEIYDSVLQSTVGIFSNXXXXXXXXXXXXCEQDFLGDVASLV-ETANSYL---GNHSYEMSXXXXXXXXXXXXXXKKVEEPVKRVLSSKGARKPGS---PSANDTEQLLQETKHLSKLDGILMNLSIANDSDIQEWACRCLYLSAELYGGSQDECNLTIDHIESLVSAVKSSGVVSRKRQKLLMRILKRFLQTNE 4234
R K+N++ YL +EVA L L + + L++A N D++ ++A ++ ++AS+ + + + +++ +++NFRN++L+ LP +GE ++ ATQEE + W P A +T++ RCL +GEE V MAAKIIEN+ +T + + ++G LW L+ HS+ D+++ TA SALCR+ HS Q+V ++ G + ++ K QQ +T+ ++LS HL+R++ ++ ++ ++R L+ S ++ K +L+L + + + LL CQ +L++Y+ERDS++ + G++ EYL +CL +++ ++++ +PRI DI++ L +SGR HP+ QVKQLK LPL + +HL+TS VFR + + + F+ S G + ++ + +GE N+ E S EAI Q+P +L ++ +LP L + ++ L+L +E ++ + E +G S D S NLL +I +P++ ++L + P P+Y+LKL+ A E N L++++ ++ ++F + ++ I + +QS + + SNL+ K+ + LL EQ + + +L+ ETA L ++ EM+ LL L + H + + R+ + A+K GS P A E LL + L+ L +L+ L D +I + + +CL + +LYGG + +L+ +++E + S K QKLL+RIL+R + +NE
Sbjct: 483 RAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASHTAELQENTPVVEAIVLLTELIRENFRNSKLKQCLLPTLGELIYLVATQEEKKKNPRECWAVPLAAYTVLMRCLR--EGEERVVNHMAAKIIENVCTTFSAQSQGFITGEIGPILWYLFRHSTADSLRITAVSALCRITRHSPTAFQNVIEKVGLNSVINSLASAICKVQQYMLTLFAAMLSCGIHLQRLIQEKGFVSTIIRLLDSPSTCIRAKAFLVLLYILIYNREMLLLSCQARLVMYIERDSRK--TTPGKEQQSGNEYLSKCLDLLICHIVQELPRILGDILNSLANVSGRKHPSTVQVKQLKLCLPLMPVVLHLVTSQVFRPQVVTEEFLFSYGTILSHIKSVDSGETNIDGAIGLTASEEFIKITLSAFEAIIQYPILLKDYRSTVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTSLLVNQEFGDGKEKASVD----SDSNLLALIRDVLLPQYEHILLEPDPVPAYALKLLVAMTEH-NPTFTRLVEESKLIPLIFEVTLEHQESILGNTMQSVIALLSNLVACKDSNMELLYEQGLVSHICNLLTETATLCLDVDNKNNNEMAAPLLFSLLDILHSMLTYTSGIVRL--ALQAQKSGSGEDPQA--AEDLLLLNRPLTDLISLLIPLLPNEDPEIFDVSSKCLSILVQLYGGENPD-SLSPENVEIFAHLLTSKE--DPKEQKLLLRILRRMITSNE 1231 HSP 2 Score: 35.039 bits (79), Expect = 2.542e-100 Identity = 17/57 (29.82%), Postives = 30/57 (52.63%), Query Frame = 1
Query: 1684 LYHPSDLTVSPIAENRLFDKFPTLKWDQNVINTSIYTSEQLAIMSLDDIRXCYQYIC 1854
+Y SDL V+PI +N K P +K+D +++ Y+ ++L + D Q +C
Sbjct: 413 IYTDSDLVVTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVC 469 HSP 3 Score: 250.751 bits (639), Expect = 2.306e-67 Identity = 125/286 (43.71%), Postives = 174/286 (60.84%), Query Frame = 1
Query: 181 MENFVLYDEIGTGDKRMVYKGRRKGSVSYVAIHCVEKEYRNKIQNHVRICYELDHVNIVQFYEWYETTNHLWLVVELCAGGSLQNILELDSYLPEKEIRNFAKDVVKGLAYLHSQDIIYGDLCSANILLDSSGTLKFSNFCSAK---------FSDASEENEQEDD-----------VTQHQSYFKSPEELAGGEQSKESDLWALGCVLYEMFTGTEPFRGSTRAQIEQKIKHENIPYPMQGQEGTFIKASEDLYMLIQGLLQKDPSQRIDLLELCMHPFWQGELA 978
MENF+LY+EIG G K +VYKGRRKG++++VAI C +K R +I N VR+ E+ H NIV F+EWYET+NHLWLVVELC GGSL+ ++ D LPE +R F D++ GL +LH I++ D+ ILL+ GTLKFSNFC AK F+ + E D+ + + +PE + G + S SDLW+LGC+LYEMF+G PF + +++ +KI E+ P P ++ + KAS D L+ GLLQ+DP +R+ L H FW+ A
Sbjct: 1 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVTFHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFCDISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVKGSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCED-PLPPIPKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFA 285 The following BLAST results are available for this feature:
BLAST of TCONS_00061011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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