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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060989 ID=TCONS_00060989|Name=TCONS_00060989|organism=Clytia hemisphaerica|type=transcript|length=203bp
GTGATTATTCATCCTTTTACTGTGTTGTTTGCTGCTTGCTCATTTGTAAA
ACAAgagATTTCAAGACCAAAGGGTTACTAAACCCCTACTGAAAGGTTAA
ACCCTTCAACCAACCTACCTCAGATTACTTGGCATCACCAGATTACCTGG
AACAACCGCAGATTACTCGGCATTACTAGATTACTCGGAATTACTAGATT
GCA Run BLAST on NCBI transcript from alignment at scaffold_351:29038..32279+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060989 ID=TCONS_00060989|Name=TCONS_00060989|organism=Clytia hemisphaerica|type=transcript|length=3242bp|location=Sequence derived from alignment at scaffold_351:29038..32279+ (Clytia hemisphaerica)
GTGATTATTCATCCTTTTACTGTGTTGTTTGCTGCTTGCTCATTTGTAAA
ACAAgaggtatgtattttttttggaataaaatttttcagatCGAGTAGAA
TAATAGGCCACAAAACGTCTAATCCTGACCACTCCTTTCTAATCCAGACC
TACTtctaaaataaacaatttttccaaatttagatGAGATTTTATATTGG
ACCAGTAGATTAGTTCTTCTTCATACTATtcaattaaagtttttaaagtA
AAGACAGTATTAGAGGTAGGTCAGGATTAGAAAGGGGTGGTCAGGATTAG
ACAATCTGACAATATCAGATTCAAGATTTTTCTGCTATAAAAATGATTCT
GTATTGGTAATCCagtactttcaaaaaagcattttacctCGGAAAACCTG
TGTCATCAACCGCCTTATAACAGACTTAAACTGGAGCAGCCCAATGCCCG
TTTCCAGACAATGTCAATCGAGCGCAATTGAATGATGCGAttaattcgat
tgtcgaatacaatttaatcgcaatcaaatattacccaggatttatTGCCG
TTCGATTATGAGATATAATCGAATCAATTGAATATTACTTACTCTAACTA
AGTGTGCCACatttaatttttgtgattttaggtGCGCGCTTTTTAAATAG
GGGACGACGCTTAATAGAGGGAGGTGCTTGATCTGGCTTGATAGAGGGAA
TTCTGTGGTCGCGGCCTTGTCTGATCAAATGCAATCGAACATCATTGTCC
ATGAATCGAACGAGTCAAACGTAATTGACagtcaatcaaaccaatcattA
ACGCAAGCCCCTGGCAACCCCCAGAAATTTCCAGGGCGATATGGGGGTAG
ACATTAATTGCCCGGTTTTCCTCTTGTCTTTTCTTCCGCTCTACCCCGAA
AACGAGCATGACGAAGGAGAACGGCCACAACCATTGCCTAGTAAAATTTT
GGACAGTCAATTTGGCTGTGTTTgaataaatagaccttttttcaaagagg
ccaccctgttgaataattatgtagtccagcagaaaaacaatgataaaacc
atgcataattattacaataagcatgatacagtaattatgcatggctttat
tattgtttttatggctggactacataattattcaaaaggacgtcctcttt
gaaaaaaggtcttttGGGGTCTTCGACGAAAGATACTctaattttttatc
ggcatttgGCCGATTAGGGGGGGGGAGGAGTTCCAACTACatgccaataa
aaaagaagTATTGTGACGAAAATCTTTttagccaatttctttctgatttc
gtccacaaacttcactgaaagcatacaatttcacttgctttcacctttGC
GCACAAATTTGCAActtaaaagtacagttttgaattagctttgataaaaa
aactcttttttcattggccagcgCACTGCCTTTTCTTACAAAATGTTGGG
AAATTCATTGCgtcttttttaaaacttttggaactaattttcacggtttt
tctcaaaaattattattgtaatcgtcagccgtgcaaaattactcgaatct
gattggtttagaggagtgcgattaatcgttaattgcactattaccacttt
ttgcactcttcggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgtta
caatagcttcttttaattgaaaacaaagaaaaattacactgcaatgtttt
ctttttaaacaaaagaaaaaaaggaggttttcgaatgtttacaaaaatgt
aaaagttagaaaaagattctttttcaaaactatgatttactaatgattat
ttactaacgattacctcggaatcgtatgttttgtcgtgcaattaacgatt
aatcactcgtaacaaaggagaaaataccgtaatttacactcgtccttcgg
actcgtgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaatttgcactcgtccttcggactcgtgcaaattac
tattttctcctttgttactcgtgattaatcgttaattgcactccaaacca
tacgattactagtactaattctTATGTGTTACACCAGGATCAACTGTGAA
AATTAATTTccgcaaaatgcaatttttctgattttttcacggaccgtgaa
aattagttccctttaaGGTACATAGAATAAACATAGCAGAAATATTATTA
GAACAACCTTTCATCTGCTTCAAAATGGTTATAAAAttggtaaattttca
aattctttgatgTTAAATTAATATTTCTTCTTTTCAGCTTGAAAACAACT
CCTGACCAGTTGTCATCTATGTCTTACCCATCATTATCACTGATTTATTC
AGGTTGGTACTTACTGAGATAGAGGGGGAATCGAAAGCATAGGTCTAACT
TGacatcatttttcattgcttgcAGCAGAAATATGTAATAGCGGAGCTGG
GTGATGAACAAGAACTCCTTAGGAAACTGCATCTTTATCTTTTCTATTGt
taactgttcataatagaaaccATCTCTGTACCTTTAAGTGttctattttt
ataagaaaaaaaggcCAGGAAAACTTTTCATACAGTAATTCTGCTCAGAT
TTTAACTGTTTTCATGGAAAAAAGTTCCCAGTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCAAGAGCTTTCTCgtaaatgaaatttatttttatca
gcATGTGCCATGAATTTGACTggctttttgtgatttttcttgaataactt
tgcatgtaaatattttttttgactaattAATTTCCAATTTATATGATGAT
GAATAGTATGCATctttctaaatttcttttttatttctttttacagATTT
CAAGACCAAAGGGTTACTAAACCCCTACTGAAAGGTTAAACCCTTCAACC
AACCTACCTCAGATTACTTGGCATCACCAGATTACCTGGAACAACCGCAG
ATTACTCGGCATTACTAGATTACTCGGAATTACTAGATTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060989-exon-scaffold_351-1491911889:29038..29094 | TCONS_00060989-exon-scaffold_351-1491911889:29038..29094 | Clytia hemisphaerica | exon |
| TCONS_00060989-exon-scaffold_351-1510915933:29038..29094 | TCONS_00060989-exon-scaffold_351-1510915933:29038..29094 | Clytia hemisphaerica | exon |
| TCONS_00060989-exon-scaffold_351-1575043694:29038..29094 | TCONS_00060989-exon-scaffold_351-1575043694:29038..29094 | Clytia hemisphaerica | exon |
| TCONS_00060989-exon-scaffold_351-1491911889:32134..32279 | TCONS_00060989-exon-scaffold_351-1491911889:32134..32279 | Clytia hemisphaerica | exon |
| TCONS_00060989-exon-scaffold_351-1510915933:32134..32279 | TCONS_00060989-exon-scaffold_351-1510915933:32134..32279 | Clytia hemisphaerica | exon |
| TCONS_00060989-exon-scaffold_351-1575043694:32134..32279 | TCONS_00060989-exon-scaffold_351-1575043694:32134..32279 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_351 | supercontig | scaffold_351:29038..32279 + |
Blast
The following BLAST results are available for this feature:
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