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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060949 ID=TCONS_00060949|Name=TCONS_00060949|organism=Clytia hemisphaerica|type=transcript|length=1182bp
AGTATGGCTTCTCTTTACGTACATTGTTAAAGCAAGGTTTgagatttcaa
gatttttaattttatgatttttgtttcaAGAAGTTACAGCTTGTTCAAAG
GGAAAGATTTCTTCAGAAAAATCACGATGATGGAACCGTTAAATCTACAA
GAAAAcatcgaaaacgaaagtgaaagtaatcgACAAAATCGTATTCGGGA
AGAGCGTAAAAAATTATTCCAGGAATTTTGTGGTAGTGTAACTTTACACG
GATTTCGTTttattttcgaagaaaaacacATCCGTCGTTTTATTTGGCTA
CTCATAACAACTGGAATCTTCCTGCTTTCCATTATCttgtttttcgaaat
tcttCAAGATTTCTTGGAGTATAAAACCGTGACCACCTATAAGACCGAGT
ATGTCACTCAAGATATCAAATTCCCGACCGTTACCATTTGCCCGCTCAAC
GGAAAATCAATCAGCAAATTGAATAAGACcatcaaaaatttcaatctCAC
ACACGACGAATTTATACGAAACATTGACAAACTAACCGTCAATAAAGTCA
ATTTTACAGACCCGAAAGTTGAAGAGATCTTTCAAAAGCTGAGGAAAGGA
AATTTCACAACATACAAGGATTTGTTAACATCTTATCAACTGACTTTCAA
AGATATGGTGGAGGAGAATCATATCATGCCAGCTTTGGAAGTCCCGCCCT
GTAAATTCTACGGCCGCCAATGCACAAAGGATGATTTTGCTATCGTTCGG
ACGTGGTTTCTTGAATCGTTATGCATACAATTCAACCCTTACAAAGGGGT
GGGCAAATCGGAACGCCCTACGCCCCTTTCATATTTGGatggttttcaac
tttttcttgaCTTGAATGAAGAGGAAGAGTTTGGGACGCTTCACAATTTA
CACGGTGTTGTGGTTTTGATCAAGTCGTATGGCAATCCTCATCAAGTGCT
CGGTGATAACGAAATGGTAGCCATCAGTCCTGGTCAATACCATTTCTTCA
AATTGAGCACCCGGAAgttcaAGCTGCTTCCACACCCATATGAGAGTGAT
TGCGGTGAACGCGAATTGGAGGTCATCAAGAAAAGCTATCCTTACTCACA
ATGGATTTGTTTTGTTGATTGCATCGTCTCTTATGCTTACCAGGAATGTG
GATGTGTCGGCTTTGACATAGAAGAGCTTGTC Run BLAST on NCBI protein sequence of TCONS_00060949-protein >TCONS_00060949-protein ID=TCONS_00060949-protein|Name=TCONS_00060949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MIFVSRSYSLFKGKDFFRKITMMEPLNLQENIENESESNRQNRIREERKK
LFQEFCGSVTLHGFRFIFEEKHIRRFIWLLITTGIFLLSIILFFEILQDF
LEYKTVTTYKTEYVTQDIKFPTVTICPLNGKSISKLNKTIKNFNLTHDEF
IRNIDKLTVNKVNFTDPKVEEIFQKLRKGNFTTYKDLLTSYQLTFKDMVE
ENHIMPALEVPPCKFYGRQCTKDDFAIVRTWFLESLCIQFNPYKGVGKSE
RPTPLSYLDGFQLFLDLNEEEEFGTLHNLHGVVVLIKSYGNPHQVLGDNE
MVAISPGQYHFFKLSTRKFKLLPHPYESDCGERELEVIKKSYPYSQWICF
VDCIVSYAYQECGCVGFDIEELV Run BLAST on NCBI transcript from alignment at scaffold_350:148978..150766+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060949 ID=TCONS_00060949|Name=TCONS_00060949|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_350:148978..150766+ (Clytia hemisphaerica)
AGTATGGCTTCTCTTTACGTACATTGTTAAAGCAAGGTTTgagatttcaa
gatttttaattttatgatttttgtttcaAGAAGTTACAGCTTGTTCAAAG
GGAAAGATTTCTTCAGAAAAATCACGATGATGGAACCGTTAAATCTACAA
GAAAAcatcgaaaacgaaagtgaaagtaatcgACAAAATCGTATTCGGGA
AGAGCGTAAAAAATTATTCCAGGAATTTTGTGGTAGTGTAACTTTACACG
GATTTCGTTttattttcgaagaaaaacacATCCGTCGTTTTATTTGGCTA
CTCATAACAACTGGAATCTTCCTGCTTTCCATTATCttgtttttcgaaat
tcttCAAGATTTCTTGGAGTATAAAACCGTGACCACCTATAAGACCGAGT
ATGTCACTCAAGATATCAAATTCCCGACCGTTACCATTTGCCCGCTCAAC
GGAAAATCAATCAGCAAATTGAATAAGACcatcaaaaatttcaatctCAC
ACACGACGAATTTATACGAAACATTGACAAACTAACCGTCAATAAAGTCA
ATTTTACAGACCCGAAAGTTGAAGAGATCTTTCAAAAGCTGAGGAAAGGA
AATTTCACAACATACAAGGATTTGTTAACATCTTATCAACTGACTTTCAA
AGATATGGTGGAGGAGAATCATATCATGCCAGCTTTGGAAGTCCCGCCCT
GTAAATTCTACGGCCGCCAATGCACAAAGGATGATTTTGCTATCGTTCGG
ACGTGGTTTCTTGAATCGTTATGCATACAATTCAACCCTTACAAAGGGGT
GGGCAAATCGGAACGCCCTACGCCCCTTTCATATTTGGatggttttcaac
tttttcttgaCTTGAATGAAGAGGAAGAGTTTGGGACGCTTCACAATTTA
CACGGTATATTCGATTAAAATGATTTCCAATCAAGAGTTTCCATTTTTAA
ATCAGTTGTCTGCCATtaataaaactttgtttttgaagaattatTCTCAT
TGAGGTACTGTGTATAATAGAAGGCACTAATCACACCTTTTCTCACTGTG
TAGACGAGACAAGTCCTCTCTAAATACCCAAGGAAAAAGTGGAACAGAAC
TTAGGTAAATAAGGAAAGAATTTTAATGACCTAATtagattatttatttt
tctcaagtacCTTTAGAACTTCACTCCATACCCAACCATAGCCAGACAAA
AGCTTTGGTGCTGCTTTACATTATCAATATCTTTTCTCTGAAGGTGTTGT
GGTTTTGATCAAGTCGTATGGCAATCCTCATCAAGTGCTCGGTGATAACG
AAATGGTAGCCATCAGTCCTGGTCAATACCATTTCTTCAAATTGAGCACC
CGGAAggtttaactttttaaattcttataaaatctTCTCTTTTACTCCTC
TGCCGGTGATGGCTAGTTATTCACTAAAAGTGTTTAACGGATAGGccatt
tcgttttcaaaatttaggcTTGTTTTCGAATTACGTAATTATTTTCTTAT
CACTGGCTCCGGTTCAATTAGTGAAAAACACCGATGCTAACGTCAatcat
tataaaaatgaaaaaattatttttggccTTCTAGGGTTTATGTTGTGAct
ttttgaagtatttttatttttcagttcaAGCTGCTTCCACACCCATATGA
GAGTGATTGCGGTGAACGCGAATTGGAGGTCATCAAGAAAAGCTATCCTT
ACTCACAATGGATTTGTTTTGTTGATTGCATCGTCTCTTATGCTTACCAG
GAATGTGGATGTGTCGGCTTTGACATAGAAGAGCTTGTC Coding sequence (CDS) from alignment at scaffold_350:148978..150766+ >TCONS_00060949 ID=TCONS_00060949|Name=TCONS_00060949|organism=Clytia hemisphaerica|type=CDS|length=3357bp|location=Sequence derived from alignment at scaffold_350:148978..150766+ (Clytia hemisphaerica)
atgatttttgtttcaAGAAGTTACAGCTTGTTCAAAGGGAAAGATTTCTT
CAGAAAAATCACGATGATGGAACCGTTAAATCTACAAGAAAAcatcgaaa
acgaaagtgaaagtaatcgACAAAATCGTATTCGGGAAGAGCGTAAAAAA
TTATTCCAGGAATTTTGTGGTAGTGTAACTTTACACGGATTTCGTTttat
tttcgaagaaaaacacATCCGTCGTTTTATTTGGCTACTCATAACAACTG
GAATCTTCCTGCTTTCCATTATCttgtttttcgaaattcttCAAGATTTC
TTGGAGTATAAAACCGTGACCACCTATAAGACCGAGTATGTCACTCAAGA
TATCAAATTCCCGACCGTTACCATTTGCCCGCTCAACGGAAAATCAATCA
GCAAATTGAATAAGACcatcaaaaatttcaatctCACACACGACGAATTT
ATACGAAACATTGACAAACTAACCGTCAATAAAGTCAATTTTACAGACCC
GAAAGTTGAAGAGATCTTTCAAAAGCTGAGGAAAGGAAATTTCACAACAT
ACAAGGATTTGTTAACATCTTATCAACTGACTTTCAAAGATATGGTGGAG
GAGAATCATATCATGCCAGCTTTGGAAGTCCCGCCCTGTAAATTCTACGG
CCGCCAATGCACAAAGGATGATTTTGCTATCGTTCGGACGTGGTTTCTTG
AATCGTTATGCATACAATTCAACCCTTACAAAGGGGTGGGCAAATCGGAA
CGCCCTACGCCCCTTTCATATTTGGatggttttcaactttttcttgaCTT
GAATGAAGAGGAAGAGTTTGGGACGCTTCACAATTTACACGGTGTTGTGG
TTTTGATCAAGTCGTATGGCAATCCTCATCAAGTGCTCGGTGATAACGAA
ATGGTAGCCATCAGTCCTGGTCAATACCATTTCTTCAAATTGAGCACCCG
GAAgttcaAGCTGCTTCCACACCCATATGAGAGTGATTGCGGTGAACGCG
AATTGGAGGTCATCAAGAAAAGCTATCCTTACTCACAATGGATTTGTTTT
GTTGATTGCATCGTCTCTTATGCTTACCAGGAATGTGGATGTGTCGGCTT
TGACATAGAAGAGCTTGTCatgatttttgtttcaAGAAGTTACAGCTTGT
TCAAAGGGAAAGATTTCTTCAGAAAAATCACGATGATGGAACCGTTAAAT
CTACAAGAAAAcatcgaaaacgaaagtgaaagtaatcgACAAAATCGTAT
TCGGGAAGAGCGTAAAAAATTATTCCAGGAATTTTGTGGTAGTGTAACTT
TACACGGATTTCGTTttattttcgaagaaaaacacATCCGTCGTTTTATT
TGGCTACTCATAACAACTGGAATCTTCCTGCTTTCCATTATCttgttttt
cgaaattcttCAAGATTTCTTGGAGTATAAAACCGTGACCACCTATAAGA
CCGAGTATGTCACTCAAGATATCAAATTCCCGACCGTTACCATTTGCCCG
CTCAACGGAAAATCAATCAGCAAATTGAATAAGACcatcaaaaatttcaa
tctCACACACGACGAATTTATACGAAACATTGACAAACTAACCGTCAATA
AAGTCAATTTTACAGACCCGAAAGTTGAAGAGATCTTTCAAAAGCTGAGG
AAAGGAAATTTCACAACATACAAGGATTTGTTAACATCTTATCAACTGAC
TTTCAAAGATATGGTGGAGGAGAATCATATCATGCCAGCTTTGGAAGTCC
CGCCCTGTAAATTCTACGGCCGCCAATGCACAAAGGATGATTTTGCTATC
GTTCGGACGTGGTTTCTTGAATCGTTATGCATACAATTCAACCCTTACAA
AGGGGTGGGCAAATCGGAACGCCCTACGCCCCTTTCATATTTGGatggtt
ttcaactttttcttgaCTTGAATGAAGAGGAAGAGTTTGGGACGCTTCAC
AATTTACACGGTGTTGTGGTTTTGATCAAGTCGTATGGCAATCCTCATCA
AGTGCTCGGTGATAACGAAATGGTAGCCATCAGTCCTGGTCAATACCATT
TCTTCAAATTGAGCACCCGGAAgttcaAGCTGCTTCCACACCCATATGAG
AGTGATTGCGGTGAACGCGAATTGGAGGTCATCAAGAAAAGCTATCCTTA
CTCACAATGGATTTGTTTTGTTGATTGCATCGTCTCTTATGCTTACCAGG
AATGTGGATGTGTCGGCTTTGACATAGAAGAGCTTGTCatgatttttgtt
tcaAGAAGTTACAGCTTGTTCAAAGGGAAAGATTTCTTCAGAAAAATCAC
GATGATGGAACCGTTAAATCTACAAGAAAAcatcgaaaacgaaagtgaaa
gtaatcgACAAAATCGTATTCGGGAAGAGCGTAAAAAATTATTCCAGGAA
TTTTGTGGTAGTGTAACTTTACACGGATTTCGTTttattttcgaagaaaa
acacATCCGTCGTTTTATTTGGCTACTCATAACAACTGGAATCTTCCTGC
TTTCCATTATCttgtttttcgaaattcttCAAGATTTCTTGGAGTATAAA
ACCGTGACCACCTATAAGACCGAGTATGTCACTCAAGATATCAAATTCCC
GACCGTTACCATTTGCCCGCTCAACGGAAAATCAATCAGCAAATTGAATA
AGACcatcaaaaatttcaatctCACACACGACGAATTTATACGAAACATT
GACAAACTAACCGTCAATAAAGTCAATTTTACAGACCCGAAAGTTGAAGA
GATCTTTCAAAAGCTGAGGAAAGGAAATTTCACAACATACAAGGATTTGT
TAACATCTTATCAACTGACTTTCAAAGATATGGTGGAGGAGAATCATATC
ATGCCAGCTTTGGAAGTCCCGCCCTGTAAATTCTACGGCCGCCAATGCAC
AAAGGATGATTTTGCTATCGTTCGGACGTGGTTTCTTGAATCGTTATGCA
TACAATTCAACCCTTACAAAGGGGTGGGCAAATCGGAACGCCCTACGCCC
CTTTCATATTTGGatggttttcaactttttcttgaCTTGAATGAAGAGGA
AGAGTTTGGGACGCTTCACAATTTACACGGTGTTGTGGTTTTGATCAAGT
CGTATGGCAATCCTCATCAAGTGCTCGGTGATAACGAAATGGTAGCCATC
AGTCCTGGTCAATACCATTTCTTCAAATTGAGCACCCGGAAgttcaAGCT
GCTTCCACACCCATATGAGAGTGATTGCGGTGAACGCGAATTGGAGGTCA
TCAAGAAAAGCTATCCTTACTCACAATGGATTTGTTTTGTTGATTGCATC
GTCTCTTATGCTTACCAGGAATGTGGATGTGTCGGCTTTGACATAGAAGA
GCTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060949-exon-scaffold_350-1491911889:148978..149881 | TCONS_00060949-exon-scaffold_350-1491911889:148978..149881 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1510915933:148978..149881 | TCONS_00060949-exon-scaffold_350-1510915933:148978..149881 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1575043694:148978..149881 | TCONS_00060949-exon-scaffold_350-1575043694:148978..149881 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1491911889:150221..150333 | TCONS_00060949-exon-scaffold_350-1491911889:150221..150333 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1510915933:150221..150333 | TCONS_00060949-exon-scaffold_350-1510915933:150221..150333 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1575043694:150221..150333 | TCONS_00060949-exon-scaffold_350-1575043694:150221..150333 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1491911889:150602..150766 | TCONS_00060949-exon-scaffold_350-1491911889:150602..150766 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1510915933:150602..150766 | TCONS_00060949-exon-scaffold_350-1510915933:150602..150766 | Clytia hemisphaerica | exon |
| TCONS_00060949-exon-scaffold_350-1575043694:150602..150766 | TCONS_00060949-exon-scaffold_350-1575043694:150602..150766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:148978..150766 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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