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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060864 ID=TCONS_00060864|Name=TCONS_00060864|organism=Clytia hemisphaerica|type=transcript|length=4028bpRun BLAST on NCBI protein sequence of LIM domain-binding protein 3 >TCONS_00060864-protein ID=TCONS_00060864-protein|Name=LIM domain-binding protein 3|organism=Clytia hemisphaerica|type=polypeptide|length=538bp VGQWAEQEKSFRMTAEDSNLVGVSHGSRDVIDDVKRHGSAGLSSSGAPSGRun BLAST on NCBI transcript from alignment at scaffold_349:639003..672108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060864 ID=TCONS_00060864|Name=TCONS_00060864|organism=Clytia hemisphaerica|type=transcript|length=33106bp|location=Sequence derived from alignment at scaffold_349:639003..672108- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_349:639003..672108- >TCONS_00060864 ID=TCONS_00060864|Name=TCONS_00060864|organism=Clytia hemisphaerica|type=CDS|length=19404bp|location=Sequence derived from alignment at scaffold_349:639003..672108- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060864 vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 5.301e-38 Identity = 72/171 (42.11%), Postives = 106/171 (61.99%), Query Frame = 2
Query: 1091 CSACDQPLDGPFVSAIGKTWHPDHFCCSSCQMSLQKQAFVEENNKLFCEKCYNSYYAPKXXXXXXXXXXXXXXXLGKSWHPDHFVCTFCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALNKNWHSGCFTCNQCNARLEGNSFFVSRGMPYCGQH 1603
C C+ + GPF+ A+G++WHP+ F C+ C+ SL FVEE N ++CE+CY ++AP CA CN I+G ++AL ++WH FVC C + FG + ++ G+PYCEK + +LFS KC C + G+K++EAL WH CF C C+ LEG F+ + P C +H
Sbjct: 551 CGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKKH 721 The following BLAST results are available for this feature:
BLAST of TCONS_00060864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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