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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060586 ID=TCONS_00060586|Name=TCONS_00060586|organism=Clytia hemisphaerica|type=transcript|length=2731bpRun BLAST on NCBI transcript from alignment at scaffold_345:206788..226814+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060586 ID=TCONS_00060586|Name=TCONS_00060586|organism=Clytia hemisphaerica|type=transcript|length=20027bp|location=Sequence derived from alignment at scaffold_345:206788..226814+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060586 vs. Swiss-Prot (Human)
Match: WDR88 (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 1.551e-66 Identity = 129/380 (33.95%), Postives = 214/380 (56.32%), Query Frame = 1
Query: 37 KHSCAMGKKVAEEEGW-DHEKLAKVKLKVLRGHIGGVQTCCFLDGQSLVLSGGVDKTLKIWDIQDGSC-RETLIGHKAEVTCTRSTKDGRRIVSSGLDKYLIVWDGTTGQPILESRHEGMVMSCDISYDGRYMLSGTDLDNVVVIWDLRQDKSIKMLK-HHNNTVMCVRFAPSSYQFCSSGMDFTSVVCDMQNYRNERDPHAVIRLGGHINMISSCDFSGDERRLCTGSWDKTIKVWDLNSGSYRTSGP-VSLDKVHEGCVSACRFSKDGSTIMSANYDQSLIMWDADNACVNFTLQGHTGWVTDCDFSADELGVISSSKDGTIRYWDILRKDEIPVVLQNKKTIGLRLLKCHECQKQFSITQAQ-NADAIKLCVFCRLE 1161
H +V E+ W D + L+K+ K+L GH V TC F + +LSG D T+K+WD DGS R+ KA V T D R++++ DK + WD TG+ + + R++ ++SC S DG+Y++SG D+D+ + I D ++ ++K HH ++ F P S + S +D + D+ + + H N IS+C F+ LCT SWDK +K+W++++G +R G V+L + HEG VS+C F++D S ++S +D+++ +WD +L+GH WV D S ++ ++S+SKD T+R W+I DEIP+V++ KK +GL+L +C C + FSI ++ +++ CVFCR++
Sbjct: 69 PHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQAT-----LLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRID 443 The following BLAST results are available for this feature:
BLAST of TCONS_00060586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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