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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=transcript|length=774bp
ATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCATTTATGGACCAG
CTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATTTACGATTTGGT
ACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATGTTTGTTGCCTA
CATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACGCTGGACTGGCA
CCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGGCTCGGGAGGTG
AAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCTGGTATCCCGAC
CCTGATCTACCGTATTGATGATGCAGTACATCCACATCTGCTACCCTCCT
ACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAGTGGGAGCAATG
AATGCTATAGCATTTGCAGTTTACggtgaaattcaaaaattgttgaCCTG
GGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATCAGATTCGGCAA
GGATTATACATAATGTAGAGATCGGTGATAATTTACCGGATAATGATTAT
CTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGTATCGAGTATTA
AGGACGGATAATTTATTGTTTTCCAAGTTGGCGATATACCTAAAATGAAA
TAATAGTTATAAGGGTATAAAGAGTATATACACTAAATCAAGtgagatta
aactttgactgaaaaaaaatcattttttaatttgcttTATCAGTTTGATG
AAAGATTTAGAACAAAGATGTCCA Run BLAST on NCBI protein sequence of TCONS_00006038-protein >TCONS_00006038-protein ID=TCONS_00006038-protein|Name=TCONS_00006038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
CLFVILVIWLFRIYGPAGVWCWIKRDATYLRFGTWYIPIFVTIFAMFVAY
IYIVVSVFKRKERWTGTFNQEEEHDKQMLAREVKPLAAFPLIYLLSGIPT
LIYRIDDAVHPHLLPSYPLLIFSVIMSPLVGAMNAIAFAVYGEIQKLLTW
GQIKSAFLSRFQSDSARIIHNVEIGDNLPDNDYLQVENEADDVDDGIEY Run BLAST on NCBI transcript from alignment at sc0000062:41626..42687- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000062:41626..42687- (Clytia hemisphaerica)
ATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCATGTATAAATATT
TTGTACAAAGGCTCATTTTATTCCTTAGTGTATCTGCAGCTTTACAGTGT
GTATCTTTCCTCATTGGTGATATCTACACAGATAATTTTCTTTGTGAATT
CCAAGCATTTATCATGCAGTATTTTGGATGGGCTACCCTTCTCTGGGTAG
TGGCAATGACTGTTAATTTAATCATGGTTCTAAAGGGAATGGAAAGTGCT
CGCTACGAGAAATTATTCCATTTGGTATGTTGGGGCCTGCCTTTGTTATG
GGCCTGTTTACCGTTCCTTCACAATAGTTATGGACCAGCTGGTGTCTGGT
GCTGGATTAAAAGGGATGCAACTTATTTACGATTTGGTACTTGGTATATC
CCCATCTTTGTCACCATTTTTGCCATGTTTGTTGCCTACATTTACATCGT
TGTGTCCGTTTTCAAACGTAAGGAACGCTGGACTGGCACCTTTAATCAGG
AAGAGGAACATGATAAGCAGATGCTGGCTCGGGAGGTGAAACCTCTAGCT
GCATTCCCCTTGATCTACCTCCTTTCTGGTATCCCGACCCTGATCTACCG
TATTGATGATGCAGTACATCCACATCTGCTACCCTCCTACCCCTTACTCA
TCTTCAGCGTAATCATGTCTCCACTAGTGGGAGCAATGAATGCTATAGCA
TTTGCAGTTTACGGTGAAATTCAAAAATTGTTGACCTGGGGTCAAATTAA
ATCAGCATTTTTATCACGTTTTCAATCAGATTCGGCAAGGATTATACATA
ATGTAGAGATCGGTGATAATTTACCGGATAATGATTATCTACAAGTTGAA
AACGAGGCTGATGATGTTGATGATGGTATCGAGTATTAAGGACGGATAAT
TTATTGTTTTCCAAGTTGGCGATATACCTAAAATGAAATAATAGTTATAA
GGGTATAAAGAGTATATACACTAAATCAAGTGAGATTAAACTTTGACTGA
AAAAAAATCATTTTTTAATTTGCTTTATCAGTTTGATGAAAGATTTAGAA
CAAAGATGTCCA Coding sequence (CDS) from alignment at sc0000062:41626..42687- >TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000062:41626..42687- (Clytia hemisphaerica)
TTATGGACCAGCTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATT
TACGATTTGGTACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATG
TTTGTTGCCTACATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACG
CTGGACTGGCACCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGG
CTCGGGAGGTGAAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCT
GGTATCCCGACCCTGATCTACCGTATTGATGATGCAGTACATCCACATCT
GCTACCCTCCTACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAG
TGGGAGCAATGAATGCTATAGCATTTGCAGTTTACGGTGAAATTCAAAAA
TTGTTGACCTGGGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATC
AGATTCGGCAAGGATTATACATAATGTAGAGATCGGTGATAATTTACCGG
ATAATGATTATCTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGT
ATCGAGTATTAATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCAT
TTATGGACCAGCTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATT
TACGATTTGGTACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATG
TTTGTTGCCTACATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACG
CTGGACTGGCACCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGG
CTCGGGAGGTGAAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCT
GGTATCCCGACCCTGATCTACCGTATTGATGATGCAGTACATCCACATCT
GCTACCCTCCTACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAG
TGGGAGCAATGAATGCTATAGCATTTGCAGTTTACGGTGAAATTCAAAAA
TTGTTGACCTGGGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATC
AGATTCGGCAAGGATTATACATAATGTAGAGATCGGTGATAATTTACCGG
ATAATGATTATCTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGT
ATCGAGTATTAATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006038-exon-sc0000062-1575043694:42649..42687 | TCONS_00006038-exon-sc0000062-1575043694:42649..42687 | Clytia hemisphaerica | exon |
| TCONS_00006038-exon-sc0000062-1575043694:41626..42360 | TCONS_00006038-exon-sc0000062-1575043694:41626..42360 | Clytia hemisphaerica | exon |
| TCONS_00006038-exon-sc0000062-1510915933:42649..42687 | TCONS_00006038-exon-sc0000062-1510915933:42649..42687 | Clytia hemisphaerica | exon |
| TCONS_00006038-exon-sc0000062-1510915933:41626..42360 | TCONS_00006038-exon-sc0000062-1510915933:41626..42360 | Clytia hemisphaerica | exon |
| TCONS_00006038-exon-sc0000062-1491911889:42649..42687 | TCONS_00006038-exon-sc0000062-1491911889:42649..42687 | Clytia hemisphaerica | exon |
| TCONS_00006038-exon-sc0000062-1491911889:41626..42360 | TCONS_00006038-exon-sc0000062-1491911889:41626..42360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:41626..42687 - |
Blast
The following BLAST results are available for this feature:
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