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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006036 ID=TCONS_00006036|Name=TCONS_00006036|organism=Clytia hemisphaerica|type=transcript|length=1421bpRun BLAST on NCBI protein sequence of TCONS_00006036-protein >TCONS_00006036-protein ID=TCONS_00006036-protein|Name=TCONS_00006036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp MSNEYVRRLQGGFHDNTLRKWQGRGQNITPDCMMYPVFVSTEADLLEEITRun BLAST on NCBI transcript from alignment at sc0000062:27638..40478- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006036 ID=TCONS_00006036|Name=TCONS_00006036|organism=Clytia hemisphaerica|type=transcript|length=12841bp|location=Sequence derived from alignment at sc0000062:27638..40478- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:27638..40478- >TCONS_00006036 ID=TCONS_00006036|Name=TCONS_00006036|organism=Clytia hemisphaerica|type=CDS|length=13860bp|location=Sequence derived from alignment at sc0000062:27638..40478- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006036 vs. Swiss-Prot (Human)
Match: HEM2 (Delta-aminolevulinic acid dehydratase OS=Homo sapiens GN=ALAD PE=1 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 1.687e-92 Identity = 148/352 (42.05%), Postives = 209/352 (59.38%), Query Frame = 1
Query: 64 LQGGFHDNTLRKWQGRGQNITPDCMMYPVFVSTEADLLEEITTLPGQYKVGKNKLLAYLKPMVENGLKSIILFPTDVEKRNDTDVFYHLHYTDENPAVDAIMLIKKHFRHVTVACDVCLCGFVESGLCFTLTDEPVRRPNYDKKDESLSKTEKMSLYVNSQAVDSKSTLQFISNLALVYAKHGADIVAPSDMNDGRVGAIDKVLEDKCLRGKCAIMSYSAKFSSCMYGPFRGACDSTPITGNRDGCQLPPASSGLANRAVDRDIVENADIVMVKPSMMYLDIVRDIKQKHPHHPIAAYQVSGEYAMMHAAVEKGIFQMKKLVYENFTCMQRAGVDIIISYFTPMVLKWLIED 1119
L G+ LR WQ + ++YP+FV+ D ++ IT+LPG + G +L L+P+VE GL+ +++F V R D ++E+PA++AI L++K F ++ VACDVCLC + G C L++ + A ++ + Q ++ +AL YAK G +VAPSDM DGRV AI + L L + ++MSYSAKF+SC YGPFR A S+P G+R QLPP + GLA RAVDRD+ E AD++MVKP M YLDIVR++K KHP P+A Y VSGE+AM+ + G F +K V E T +RAG DIII+Y+TP +L+WL E+
Sbjct: 7 LHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIF--GVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSE--------------------------NGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKEE 330 The following BLAST results are available for this feature:
BLAST of TCONS_00006036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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