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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060434 ID=TCONS_00060434|Name=TCONS_00060434|organism=Clytia hemisphaerica|type=transcript|length=1578bp
caTACAGGACCTTACAAAGGAGAAATGATGATGTCTGTACAATGGTATTA
TAAACCGACACAAACGATTTCAAAGGGGAACGATATCATCTGTGGAGACG
AGATGGAAGTCTTTGCATCTCGCCATAAAGACGATAACAGTGTAGCATGC
ATCATTGATCGATGTTATGTCATCACTCTGCCCCAATATAATAGATACAA
AGCACACAAGCAACGATGGGAAGAGAAAAGAAACCGGAAATTGGTCGTAG
TTCCGGAAGTAAAAAATCACCGGTCACGCCTTTTGCCAAGCCCGGACTTT
GATCCTTCCTTAGTTTATTTTTGTCGTTTTGGTTACGATTATCGGTCTGG
AAAATTGATCAAAAGTACGTATTATTGAAACTTCTTTGAGgtattaaaaa
tttaaattttagttagttttttaaattttaaagtaTAAACGGATCATTTT
aagcagatgagatggagtttttataagatactttaataattggttatttg
aattgataaaaatgacgcgttctttagaaaaagtagcaAAATGGTTTTAT
TattggttaacgaccaaccaaatcaaataagagcttgtaaaaactcgtCC
CGTTTTAAGAAAGTCTTACCTCCATTTCTTTGGATCCACTgtcaaaactt
gaaattctttaacaCGTGCACTGTCAAACCCTTttcagaaatcgaaaaat
tgtggccctaattttttcttcaaataccTCCAAGTTGTGCACCAATCGAC
ACATTTTCTGTTTGTGAATTTTGCACATTTTAATAACCAATTGACCCCCC
CCTACAAAGAGCGTAGTCGTAGTCGGCAGCAAATATATTAATATGTTTGG
GAAAAAGAAAGCTAATTCTTTAGGAAGAATATAATTTTGCATACAGATTT
TACTTTAGATCTTAAGAAAAGCCGtcagttttttgaaattccctcgTCCT
GACATAGAGGGCTGCTCATTCNAccaattcccccccccccccctacaaag
AACGTATTCGTAGTCGGCAGCAAATATATTATTATGTTTGGGAAAAAGAA
AGCTAATTCTTTAGGAAGAATATAATTTTGCATACATATTTTACTTTAGA
TCTTAAGAAAAGCCGtcagttttttgaaattccctcgTCCTGACATAGAG
GGCTGCTCATTAATTCATTAACTCTTTCTATATCGTAAAAATTGATGAAA
TCGatgtttttttcagtttttagaaGTGCAAACTTCAAATCGAATTGTCT
CGGCTCTGACAAAAGTAAAAATGGTCAAGTTTGAGATCATTGGACAGCTC
CTTCAACATCTGTTTATTTCCCAAATGAAAGCTAAAGCAGCCAAAAGAAA
AGTCATGAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTC
TTCGTTCgtctttttaaaactttgggGGAAATTTCCGATTCCAGGTCTTG
ATCATAAAAATGTTGCaatattgtcacttttttgaTGAATGTCTTCTTTT
TGTCAACGNAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAG
TCTTCGTTCgtctttttaaaactttggg Run BLAST on NCBI transcript from alignment at scaffold_341:461698..467997- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060434 ID=TCONS_00060434|Name=TCONS_00060434|organism=Clytia hemisphaerica|type=transcript|length=6300bp|location=Sequence derived from alignment at scaffold_341:461698..467997- (Clytia hemisphaerica)
CATACAGGACCTTACAAAGGAGAAATGATGATGTCTGTACAATGGTATTA
TAAACCGACACAAACGATTTCAAAGGGGAACGATATCATCTGTGGAGACG
AGGTTAGATCAGTTTATACTACACGTCTTTTTATAAGAACATCCAAAATT
TTTGAAGCCTTGGGATGTTCTTAACTTTTTGAGTTTCAAGCCTAAAGATG
TACTTAATGTTCTTATTTTTGCCATTTTTTTTGAGTATTTTTGTCAATTT
TCCTATTAAATTTAGTGTTCTAGCATCCGCAAAGGCTTAGAATTTTCTAA
CTTTTTCTTAAGACTTTGGCATTTAAGCCCAACGTTTTTATATAGTTTGT
TCTTATAAAAAAAACGTGTATTTATTCTTATTCTCCTTGACCAAACTTTT
ATATTTTAGGATTGATCTTTCCGAAAGGTTTTCAAATTTAAGCCACATTC
TAGTGTTATTAATTATCCAACAAGATTTCAAACATTTTCCAGTTATACAG
ACACTGTTACTTACATAGGTTGCTCAAACCTTATGTTATGGAGAGCAATC
ACTTACCTCACATAAAAGGGATGAAAGCAAAAGAAGCACTCTCTGCTTTT
AGTCTGAAAGTTATGTGTTATGGTCACGCTGTATATCATATTCATGATAT
TCATGATGTAAAGTTTTCTACGGAAAGACCCCGGCTTTTGCCAGTAGTGG
CAAATTAAAACTAGACAAAAATTGTATAGAATTTGCCACTACTGGTAAAA
ACCGGGGTCTTTCCGTAGAAAACATTACGTTATGAATATCATGAATTCTA
CATCGTTTTTACACGTAGTCTTAATTTTATGTTTACCAATACCACCCGCT
CATTGTTACAATAATCCGTCTCAAATATTTTTCAAAAACTTTAATTGTTT
TTAAGTTTGATTTGAACAATTGTCCAATATGCAGCTACAAGTAAGTCAAA
TAAAAGAAATTGCAAATGATACAAATTTTTTTAATAAAACGATTTTTCAA
AAAAAACATTGGGGCAGAAATAATATGTACAAAACAAACCTGAATTTGGA
ACGATTCAAATCTCATTCTCAGCAAATTCATCCTCGTAGTAGTCAAAATA
GGGTACTATAGGAAGCTTCAATCACCACAATTTTGCATTTTAAAATTACG
AACGACATGAGAAGAATATGAGACTATGATGTCAAAAATAAGAACAACAA
AGCCTAAAACAAAATACTGGTTCTTTCAAAAACAAAAAGTGTAATCAAAA
TGATCACGAAATGATATAACTTAACTGATTCTTCCTATGTCACTTTTAAC
CAATTGGCTCTTTTAAAAGTGATATGATTGCCTCTACGAATTCAGACGTT
TGCCGTCCCATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACGGTA
AGTTAAGTGGTTTTAATAAACCTGTAAAACCGTTGTAGAAAAGAATCCAC
ACCATTTATCGGATGAAAAAAAGCCATTTTCCAGAAGGTTCGTAACCTTG
GTGTCGTTCCCAATCATCACATTCAAACCTGGAGTCTGTTTGGTGAAGAA
TAACATGTCCTTTTGCAAACTCGAATATCACGTGATTGTAATATAGGTGA
CCGTATCCAATATGTCCTATCCGAAGGTTCGCACAATTAGCCACTGACAT
CTTCGAGCTGTCATCCGGTAAGAACCGCACGTTATTGCACATTCCCGTTA
TAAAAGAGTTTTGCTCTTTGTTGATAAATCTAAAGATTTTGTCTCCGTAT
AAGATTGTGTGGAGAGTGCGTCCATGCCATGGTTTGTAACATTTGATTCG
TAGTTCAGTGTATCCGTGGTTGACGAACAAATTTCGGAGAAGATCATGGT
GGAGCAGGACATGGCCACTTTGGATGTTTTGGAGCTNATCCGTGGTTGAC
GAACAAATTTCGGAGAAGATCATGGTGGAGTAGGACATGGCCACTTTGGA
TGTTTTGGAGCTGAGATACTGTAGAAGGATTTTGGAGGATTGGATAGATA
TCTGAGGGGTCCTCAAATGTCATGTTTGCAACGGCCAACCAGCCGCCTGA
AAGTGAAGAAATGGCAGATCTATTTAATGTCGATTATTCTTTTTGATCTG
CTCTGTCAAATTTTCACTAAAATTAATTTTGCATCAGTTCTAAAGCCAGT
GAGAAATTGCCTAAATGTAAATGTAGTTGTCTTGTTGATGATAGCATTAC
GGACAACCTCACACTTCCCCACTTTTGTCTGAATAGATATTCATTTTTTT
TTTACAAATTTTGGTACCATGGCTAAATGATGGATGATGTACTTACCGCC
ATCTGTGGTTAAATCACAGAACGCTGTTGTAGTTTGTTTGTCACCATCTA
CGATTGCCAACTCGTAAATATCTGATTCACACTCAGGACAAACTTCTTTC
ACCTCTTTGCAAGATTGGAATGGTGGGCATTTCTAAAAAGAGAAAGAATC
TAAGATAAGTGAACCTTCCCTTTGCGCAAAGGACGTTGCACAAAGGAGAG
GAGGCGAACCTACCCTTTGCAAAGGGTATAGGCTCTAATCTAAAGCTGGG
TTCAAAGCGCTAAATAAATAACAAGTAAAAGTGTTTGGAAAAATGTCTAT
TCAGTGACTTGTTAGTTTACGATTTCAATGAAACCGAAGTTTAGTAATCA
TTAATAAATTTATCTAAAGTTAGAAGATTACATCATGCTCCTCAAACATA
ACTCCATCGCTTCCAGCATCATGTTCCCAACTTCTCATGCAGTGGCATTG
CTCTTTCTCCGGCACATAAAAACTTTTCTGCATTTTTCTTTGACATTTCA
ATGTACATTCGATTGGTGATCTTGCCGAAATAATGTTCGATTTGGTTGTC
GTGCCAACGTTTCCTTCTGTTTCTTCCTGTGTATACCATCTAGCGTAAAC
CAAAGCCATTTGTGTCAGAAAAATGCTTGAATACATTTTTGAAACAGTTT
GAAGCTATGTTACACTTCACGTCTGCTTATGATCCAGAAATTAAAACTTT
TAAAATGTTCAAAATGTTTTTTTTTAGTTCTAATATTTTTTTGAGGGAGG
ATATATACATTGGAAATTCAATTAGTATAACGTATTAATATATTACCTAT
TTTGGTCTAAATTAATTATGTATTTGTTTTCAGTCATGAATTTTTAAAAC
CTTCTATTTAGTTTGACCATATTTATATATTCCCCTGGCAAAGAATTAAC
TGCAGTATATATAAGAACATAAGGCTTCGATGGCCAAAATATTCAGAACA
AGATAAGAACATTTTAAGGCTTTGCGGACTCTAAAACACGCGAGAGAAAT
GCCCACAAAATCGTGAAAATATGAACATAAAGAACATAGGCTCGTAACTC
AAAAAGTTAAAAGAACATCCGAAGTCATCAAAAATTTTGGATGTACTTAA
AAAAAAAGTTAATCATTTCTTCTTATCCATTTCTGAAATATAATGCTCAT
GTAATTATGAAATAGTTCTTATAAAAAAGCTGTTTAAATTTATTCCGAGA
CTATTTAACCATTGTGTCAAAATTGTCAAAACGTTGCTCAGTGATGAAGC
AAACAGGAATTTATCATTCAAACCAGCAAAAAGATTAGATACAAAAAAGA
TCAGATTTGGAAAATTTTTTGTAATATTTGGTCAAAGATTACTCTTAAAT
CCTTTAAAGAAAAAAATCGTACTTTTTTACTTGTCCTTTAATTTTATTGA
TACTACTAATCTAGACTAGAATATTTCCTCAAAACTCTCCGGTCACTAAA
AAGCTTATCGAAGTAAAGAAGTCAAAATGTACTTGCTCCAAAAACCTTGA
CTCCATCAGATGATTTCCCCGTAAAATTTACCTAAGGTGATTTTCATCCT
GATATGGGATGAATATTATAAACTAACTTTTTAAAGGCAGTGAACAATCA
TGAATATAAACATAAGACCTGAGCCACATTCGCACTTCATGCAAAAGGGA
ATAACGTGCTTTTGAATGTTTTAGCTGAGCAAGTAGGTCAGAACTTCACA
TACGCCGCATTCCTACAAATTCTACATACCGTATTACTTGAAATAAACAC
CCGGGGTGTTTGTTAATTTTGAATTTTTTACGAGGGGCGTTTATTAGAGG
GGTCGTCTATTCGAAGTAATGCAGTAGGAGATTCGAAACCATATTGGATT
TATCCGTTAACTTTGTTTTTCATTCCGATGAATATTGACTTGTCTAGGAT
GAATATTAAACGAACTCAAAGTGAAAGATGGCACCAAAAGCTTCTGCCAA
TCATAAACATCAACATCTCGATTTTATGCAAAAGGGAATAAGGTTGTTTT
AAAATATTTAGGCTACACAAGCAGGTCATCAACATTCGCCGCATCCCTTT
TGAGAAGAGGATGGCACTGGCAGAATAGGCTGACTTGAACCTGAACTACA
TCATTGATTGAATTTACTTCAAATCAAAATAAATCATTTTTTTCTTTTCT
CGTCATAGATGGAAGTCTTTGCATCTCGCCATAAAGACGATAACAGTGTA
GCATGCATCATTGATCGATGTTATGTCATCACTCTGCCCCAATATAATAG
GTAATGTCCGTTTCTTTCATATCAAANTTGCATCTCGCCATAAAGACGAT
AACAGTGTAGCATGCATCATTGATCGATGTTATGTCATCACTCTGCCCCA
ATATAATAGGTAATGTTCGTTTCTTTCATATCAAAAGATTTGGTAGGTAA
CGCTCTACACTGATCTACATTTTCAATTGTTACAAACAGTTATAATGTTT
GACTCTATAAAGTTTCGAGCCCTCGCATTTTTTTTTATTCTGTAACCCGC
ATCTCGTAACTCTCATAAATTTTCGCTTACTTTTAAATCATCCACCTACC
AATCAAAATTAGAATACAAACTCCGCAATTCAAAATTTCAAACAGTTTTT
TTTTGTCTCTTTCAAGATACAAAGCACACAAGCAACGATGGGAAGAGAAA
AGAAACCGGAAATTGGTCGTAGTTCCGGAAGTAAAAAATCACCGGTCACG
CCTTTTGCCAAGCCCGGACTTTGATCCTTCCTTAGTTTATTTTTGTCGTT
TTGGTTACGATTATCGGTCTGGAAAATTGATCAAAAGTACGTATTATTGA
AACTTCTTTGAGGTATTAAAAATTTAAATTTTAGTTAGTTTTTTAAATTT
TAAAGTATAAACGGATCATTTTAAGCAGATGAGATGGAGTTTTTATAAGA
TACTTTAATAATTGGTTATTTGAATTGATAAAAATGACGCGTTCTTTAGA
AAAAGTAGCAAAATGGTTTTATTATTGGTTAACGACCAACCAAATCAAAT
AAGAGCTTGTAAAAACTCGTCCCGTTTTAAGAAAGTCTTACCTCCATTTC
TTTGGATCCACTGTCAAAACTTGAAATTCTTTAACACGTGCACTGTCAAA
CCCTTTTCAGAAATCGAAAAATTGTGGCCCTAATTTTTTCTTCAAATACC
TCCAAGTTGTGCACCAATCGACACATTTTCTGTTTGTGAATTTTGCACAT
TTTAATAACCAATTGACCCCCCCCTACAAAGAGCGTAGTCGTAGTCGGCA
GCAAATATATTAATATGTTTGGGAAAAAGAAAGCTAATTCTTTAGGAAGA
ATATAATTTTGCATACAGATTTTACTTTAGATCTTAAGAAAAGCCGTCAG
TTTTTTGAAATTCCCTCGTCCTGACATAGAGGGCTGCTCATTCNACCAAT
TCCCCCCCCCCCCCCTACAAAGAACGTATTCGTAGTCGGCAGCAAATATA
TTATTATGTTTGGGAAAAAGAAAGCTAATTCTTTAGGAAGAATATAATTT
TGCATACATATTTTACTTTAGATCTTAAGAAAAGCCGTCAGTTTTTTGAA
ATTCCCTCGTCCTGACATAGAGGGCTGCTCATTAATTCATTAACTCTTTC
TATATCGTAAAAATTGATGAAATCGATGTTTTTTTCAGTTTTTAGAAGTG
CAAACTTCAAATCGAATTGTCTCGGCTCTGACAAAAGTAAAAATGGTCAA
GTTTGAGATCATTGGACAGCTCCTTCAACATCTGTTTATTTCCCAAATGA
AAGCTAAAGCAGCCAAAAGAAAAGTCATGAAATTTGCAAAGAGTTTAGAG
GGTTTTCAGTCTTCGTTCAGTCTTCGTTCGTCTTTTTAAAACTTTGGGGG
AAATTTCCGATTCCAGGTCTTGATCATAAAAATGTTGCAATATTGTCACT
TTTTTGATGAATGTCTTCTTTTTGTCAACGNAAATTTGCAAAGAGTTTAG
AGGGTTTTCAGTCTTCGTTCAGTCTTCGTTCGTCTTTTTAAAACTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00060434-exon-scaffold_341-1575043694:467896..467997 | TCONS_00060434-exon-scaffold_341-1575043694:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1575043694:463448..463539 | TCONS_00060434-exon-scaffold_341-1575043694:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1575043694:461698..463081 | TCONS_00060434-exon-scaffold_341-1575043694:461698..463081 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1510915933:467896..467997 | TCONS_00060434-exon-scaffold_341-1510915933:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1510915933:463448..463539 | TCONS_00060434-exon-scaffold_341-1510915933:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1510915933:461698..463081 | TCONS_00060434-exon-scaffold_341-1510915933:461698..463081 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1491911889:467896..467997 | TCONS_00060434-exon-scaffold_341-1491911889:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1491911889:463448..463539 | TCONS_00060434-exon-scaffold_341-1491911889:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060434-exon-scaffold_341-1491911889:461698..463081 | TCONS_00060434-exon-scaffold_341-1491911889:461698..463081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:461698..467997 - |
Blast
BLAST of TCONS_00060434 vs. Swiss-Prot (Human)
Match: BAHD1 (Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens GN=BAHD1 PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 4.560e-21 Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 10 PYKGEMMMSVQWYYKPTQTISKGNDIICGDEM--EVFASRHKDDNSVACIIDRCYVITLPQYNRYKA-HKQRWEEKRNRKLVVVPEVKNHRS---RLLPSPDFDPSLVYFCRFGYDYRSGKLIKS 366
P GE+MMS+ WYY+P + + G + + EVFASRH+D NSVACI ++CYV+T +Y R+ A K+R E +RK +VP ++ + R +P D DP LV+ CR YD+R G+++K+
Sbjct: 656 PESGELMMSLLWYYRP-EHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSADYSTPPHRTVPE-DTDPELVFLCRHVYDFRHGRILKN 778
The following BLAST results are available for this feature:
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