TCONS_00060425 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060425
Unique Name	TCONS_00060425
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	779

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_341:393258..395345-

transcript sequence

>TCONS_00060425 ID=TCONS_00060425|Name=TCONS_00060425|organism=Clytia hemisphaerica|type=transcript|length=779bp
TTGATTCAAACTGTATCACACCAGGTACTGAATTCATGGCAAGGTTGAAC
AATCAATTGAAATACTTTGTCAACATGAAGATCTCAACAGATCCAATGTG
GCAAGAATGTACCATTTACTTGTCTGGGCATGATgTACCAGGAGAGGGAG
AACACAAAGTAATGGATTTCATTCGGTATTGCAAAGCACAACCTGGTTAT
GATCCTAACACAAGACATTGCTTGTATGGTCTTGATGCTGATTTGATTAT
GCTGGGCTTGACCTCCCACGAGCCTCACTTTGCTTTACTTCGAGAAGAAG
TTCGATTTGGTAAACAAGCTAAAAGGATAACGAAACCTGAACAACAGACC
TTTCACTTGCTCCATTTATCACTTCTACGagaatatctcgagtttgaatt
TGGTGCTTTAAAGAGCAAGCTCCATTTTCAGTATGACATTGAGAATATCA
TTGATGATTGGATTCTCCTTGGCTTTCTTGTCGGAAACGATTTCGTACCT
CATTTACCCAACTTTCATATTAACCATGATGCATTGCCATATCTGTACgg
tgtttacaaagattttctCCTCACCACGGATGGCTATTTGCATAACGGTG
GATATATCAATTTGCATCGAATGAAAAAGTTCTTCGAGTTTCTAAGCAAG
TTCGATTTGAAcaattttgaggaaaagtatGAGGACTTTAAATGGTTACA
AAGCAAGAAAACGGGGGACATGCTGGAAGATTCGCACCAAAACAATCCCA
GAGGGACACCAAATAAGAGAAGGGTGAGC

Run BLAST on NCBI

transcript from alignment at scaffold_341:393258..395345-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060425 ID=TCONS_00060425|Name=TCONS_00060425|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at scaffold_341:393258..395345- (Clytia hemisphaerica)
TTGATTCAAACTGTATCACACCAGGTATTTTTTCAAACTACATCCAAATG
AGCTAAGTCCATGGACTGGACTCTCCACCAGTAGAAAAACCTTTTTTTAA
GGTTCTGATCTGATAAATCGGTCTCAGTATGCTTTATAACGATCTCCATC
TCTTCATATTTTTCTCTCTACTTTTTTGAAAGGTACTGAATTCATGGCAA
GGTTGAACAATCAATTGAAATACTTTGTCAACATGAAGATCTCAACAGAT
CCAATGTGGCAAGAATGTACCATTTACTTGTCTGGGCATGATGTAAGTTG
TTCCAGAAAAAATTAGCATATCCCGTTGTCAAAAACATTGTTATATTGGA
AGGTTAATCCAATAGATTTTTGACCTGTTTCTGGAAACTCCCCAGAAGAT
CACTTTAAGTACACAGATAGGCTAGATGTGACAGTTTTAGCAAATTGTGC
CTCAGAGAGTATGATGGAGTGCACAGTAAGAAGAGAGAGATTACCAATTG
AAAAGATACCCCATCAAGATGAGAATGTTTGAAAATGTTTTTCAGGTACC
AGGAGAGGGAGAACACAAAGTAATGGATTTCATTCGGTATTGCAAAGCAC
AACCTGGTTATGATCCTAACACAAGACATTGCTTGTATGGTCTTGATGCT
GATTTGGTAAGCCCATCAGACCAGATGTCCGTTTTTACCCTAATTTTGAA
AAAAGATGGAAAAATCGTCTGAAGCCTTTTGCTTTCTTCCTTGTTCTCAT
AATAACTATCAAATATCGACTTTAACACTTTAACTTACTCTTTAATTTAT
TCTCAAGCAATAGGAGTAGAATGCTTTATTTTGATACATGTTCTTTACTT
ATCCAAACTCTAAATTATTACCAAGTATCATGAAATTCCATTTCCTCTTC
AGATTATGCTGGGCTTGACCTCCCACGAGCCTCACTTTGCTTTACTTCGA
GAAGAAGTTCGATTTGGTAAACAAGCTAAAAGGATAACGAAACCTGAACA
ACAGACCTTTCACTTGCTCCATTTATCACTTCTACGAGAATATCTCGAGT
TTGAATTTGGTGCTTTAAAGGTAAGGCTTGTTTTCGATGACTCACACAAT
TTTAGCTAGTAAGTAAGTCTGCGACCGCAGTCGGAGGCGACCCGAAGGCT
CCTCTTTCGATAGCTATCTACCCGAAGGTAGGGGAGGGCGCCACTCTTTC
TCCCTGGATTTNTCACTAATGACAACGTGTTTACTTCATTCCTGAAAGTT
CACAGAAGGAGAGTTAAAAACTTTTTCTTTTCTTCTTAGAGCAAGCTCCA
TTTTCAGTATGACATTGAGAATATCATTGATGATTGGATTCTCCTTGGCT
TTCTTGTCGGAAACGATTTCGTACCTCATTTACCCAACTTTCATATTAAC
CATGATGCATTGCCATATCTGTACGGTGTTTACAAAGATTTTCTCCTCAC
CACGGATGGTAAGTAGTTTTTCAGGTTTACTAATCCTGATCGGTTTGAAC
ATTTTGGGGTAAAAAATATTAATTTTTTTGAAGCCGTATTTTCAAATTGC
ATTCAATTTATTTCAAATCATGAGAAATCTGACATTTGATTTTCTTCTTT
TAAACCAGGCTATTTGCATAACGGTGGATATATCAATTTGCATCGAATGA
AAAAGTTCTTCGAGTTTCTAAGCAAGGTAACATGGTCCATCTTTATAATG
TTTCGAAATGCGAGATCGAATTTGATATAAGATTTTGATAACGAAAATCA
TAACGTAAAAAGGAAAAATTAGAACTGTTCGAAAAGAAAAAAATTATATT
CTAGTACCCTAGTAGTCAGAAATGGTTCAGGTTGAACTGGAATATTCAAT
CCATGGTTAACGATGAAAATAACAAAAAAACTGAATTTGATAAAAACAAG
TAAAGTTTTCAAGTTTGCATATAGTCACTTTACCCTCTTTTTGTTTGTGT
AATTTTCAGTTCGATTTGAACAATTTTGAGGAAAAGTATGAGGACTTTAA
ATGGTTACAAAGCAAGAAAACGGGGGACATGCTGGAAGATTCGCACCAAA
ACAATCCCAGAGGGACACCAAATAAGAGAAGGGTGAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038001	XLOC_038001	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_341	supercontig	scaffold_341:393258..395345 -

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00060425 vs. Swiss-Prot (Human)
Match: XRN1 (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 2.048e-101
Identity = 160/236 (67.80%), Postives = 189/236 (80.08%), Query Frame = 3

Query:    3 DSNCITPGTEFMARLNNQLKYFVNMKISTDPMWQECTIYLSGHDVPGEGEHKVMDFIRYCKAQPGYDPNTRHCLYGLDADLIMLGLTSHEPHFALLREEVRF-GKQAKRITKPEQQTFXXXXXXXXREYLEFEFGALKSKLHFQYDIENIIDDWILLGFLVGNDFVPHLPNFHINHDALPYLYGVYKDFLLTTDGYLHNGGYINLHRMKKFFEFLSKFDLNNFEEKYEDFKWLQSK 707
            DSNCITPGTEFMARL+  LKYFVNMKISTD  WQ  TIY SGH+ PGEGEHK+M+FIR  KA+P +DPNTRHCLYGLDADLIMLGLTSHE HF+LLREEVRF GK+ +R+  PE+ TFHLLHLSL+REY+++EF  LK K+ F+YDIE IIDDWIL+GFLVGNDF+PHLP+ HINHDALP LYG Y   L    GY++  G++NL R +K+   LS FD  +F E + D KW +SK
Sbjct:  129 DSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESK 364

The following BLAST results are available for this feature:

BLAST of TCONS_00060425 vs. Swiss-Prot (Human)

BLAST of TCONS_00060425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XRN1	2.048e-101	67.80	5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE...	[more]

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TCONS_00060425 (transcript) - C. hemisphaerica