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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060452 ID=TCONS_00060452|Name=TCONS_00060452|organism=Clytia hemisphaerica|type=transcript|length=3029bp
gtctttttggatgaaatttggcacataaggtaacttttgacgaaaaaact
tttttgatgacgtcgctcatcatgcccaaagtgagcaaaaacggaaaatt
tccttttttcttataaatagctattgtattagAAAAAAGTTAAGCCTAAa
gtctaaaatgcttattttatcctaaatattcaataaactACGATTTAAAC
GAtaagacataaaaaataaatttgtattgaaaCAGTGTTAATTCTTATGA
CACCTTTCTGTCAGGAATgccatcatgctcaaggtgtgaaaatttgtagg
tgtcaaatcttttttcttttttttgaagctaaataaaagttaggaattta
catttcatggcaaaagttctattatttcaggagctattaccattGATTTG
AAAGTATCAGTCAGGACTAAGccactttttgatattttatttcgtctttg
aaatatatattagcaaaaatcagtgacaGACAGGGCGTCCCCTCCGTCAC
GCATATGCCTGTCTTCCTACCACtcaatttcaaatttggctttcaaaatt
GTTGTCAACTTTATGTAAAAATTTTACTCTATAATGGAAGTATATGATTT
GAAAACTACAAGCCATTTTCTTGAACCAAACTCgagttataactgaaaat
gcctgataatttttaatttttttatgaatcttCTGAGTCAGAAAGTCACA
AAATTGTCAGATTTTTATCTAACTCCATCCATTTTATCCATTGCTTCACC
CCCCCATCTTTACTTCAATTATTGATTGCGCAAGAATCCAAGTTCAAAAT
ATAATGGAGTTTTAATATCCAATCCTTTTCTATGGGTTGAGGAATGTGTT
ATTATCTCCCTAGTCGTATTGTGAAATCCAAGGACCGTTGTTACGGACTG
TCTACATAAACACAGAAAAGAAGCAGGCCGTTTAATTTCGATTTGCGACA
GATTTGACTATAGGGTTCCCTTAATTGCAAACGCCAGTGCTTGCGCATCA
AAATCACTTAGGATGACAAAGATGGTattgttgatgctctctaaaTTTAT
CTTTAAGGGGAATTTTAATTAGTTTTCATCAACCACAGGAGTACATAGAG
TAGTGTGAGAATTTCttgtaaatacttttttatgctTCAAATGAAAGAGA
ATGGGATTATCTTCACCATAAAATTAGCTTTTAGGAAATAATAAACTGCC
ActtatgagagtttcttcagGAAGTTTGAAGGCGATTttaatttgatcga
aaacggGAACCTATTGAACAGTAAAACGTCTAATTGAGAGCATCAAATGT
ATCATTAGTGTAAAAGAAggagaaaatatataaaaaatcttgCTTTTTTT
ATACACTTGAGGTTGACATGACGCGGATTATAAGACCAAATAATAaatac
tttgatttcaaaacattcatgGACAACAGGACAACAATTTATATCCACTT
CTTGCGCGGAAGACCTCCATTTTTTTACCCGTACATTGACTATTTTAAAA
ACTCATATTTTACTAACTTTTTAGTCTGGGATTTAGGGAGTCTATATTGT
GGGCACACATCTGTCAAATTACTTTAGCCCCCCTTTTAAGGActtattta
aaaacagaaaTTTCCCCCACATTCATCAGCTTGGAAAAACTGtgcgtttt
ttatataaataagcTCTTATATTTGTTTAACACCCCCTGATAGCTGATGA
TTATAGGCTAGGCTAGatttcttttctctttcctATTCCAACAATACAGC
AATACAATGCTCACATAGTACCTGACGAATAATACAATTTAACAGAATTA
TTCCCATGCAAATTTTCATATTCGTTAATTCctattatgaaaaatatttc
aatttatgTCTGAAAATATTTGATCAGATATGTATTTATACATTGTAGTA
GCTCTGATGGATCTTAAAATTGCCTCAGTCAGTTGTTAGATTTTGTTAgg
cttttttttgcttgaaattccTTGAAATTCAGATTCCTCGGACTCCGGAG
ATTTTCTTGTTGCGCGTCCGGGGattttaacattactttttTGAGACTTA
CCACGGACACCCCAGACTGAATGTGCGGTCCGCACTGCGTATTTTAACAT
TCACAGGGGCTCTTCCAGACTTTAAAAAGAAACATCGGCCTGGTCAAACA
CCATAAATAATAAACTTATCAAAACTCAACCTCATCCCTGTGTATTCCAG
ACTTTATTTatgttactgattgacgccagagaataaaTATCAGtgaacaa
acaaaacaaatcacTCATATATTTTAATAAGATAGGCCGCTGTTAACAGa
tcttccaaaaaaaaaccaAGTCAATCAAAGTTGATAATTTTCCTGTGGCA
CATTTTGATTGGGTGATGTTAGCATGATGGGTAGTATTGGTAGCTAAAGT
AGCATTAATTTCATGattaatgtttttttatggtGTCGGATGGAGGCTCT
GTCAAACTTTTTCAAGTTAAGTGAATCAGTCTACttttaaaacttcaaaa
agcttttaagaaatttgattggcttgtttttaaTGTTTCTCTAGGATAGA
ACAGAGGGGTATGTCCAGGGATagaaatatttgttttgttcCCCGGACAT
TTGACCTGTATTGTATGGGGAATAAGCAGGGTCGTCTCTTGAGAAATCCA
CCATTTTTGGATTTGTTTACCTCTGCAAAAGTGTTACATGCTACATGGCA
ACATTCCTCCTCTAGGAGGGGAACTTTCCAATGAAGTGTATTGATATCAG
AAAAATACAATAAAGCAGTGGATAAAACTGATAAAAATCCCCCAAAAGCG
TTGTTTTGTAACATAcagtgaagtcgggtaacttgcatcagtggagggaa
acatagccatcaaatgactgaccaatcaaagcagcaaaatttcaaaacaa
aatgaactaCGCAACTCCGGTTGCAGCTCTATCTActcctaccatttttg
ttttgatttaactttgttttttaatgaccagccaggtcattcatttgagg
gctatgcatgttagcctccactgatgcaa Run BLAST on NCBI transcript from alignment at scaffold_341:151857..154885 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060452 ID=TCONS_00060452|Name=TCONS_00060452|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at scaffold_341:151857..154885 (Clytia hemisphaerica)
ttgcatcagtggaggctaacatgcatagccctcaaatgaatgacctggct
ggtcattaaaaaacaaagttaaatcaaaacaaaaatggtaggagTAGATA
GAGCTGCAACCGGAGTTGCGtagttcattttgttttgaaattttgctgct
ttgattggtcagtcatttgatggctatgtttccctccactgatgcaagtt
acccgacttcactgTATGTTACAAAACAACGCTTTTGGGGGATTTTTATC
AGTTTTATCCACTGCTTTATTGTATTTTTCTGATATCAATACACTTCATT
GGAAAGTTCCCCTCCTAGAGGAGGAATGTTGCCATGTAGCATGTAACACT
TTTGCAGAGGTAAACAAATCCAAAAATGGTGGATTTCTCAAGAGACGACC
CTGCTTATTCCCCATACAATACAGGTCAAATGTCCGGGgaacaaaacaaa
tatttctATCCCTGGACATACCCCTCTGTTCTATCCTAGAGAAACAttaa
aaacaagccaatcaaatttcttaaaagctttttgaagttttaaaaGTAGA
CTGATTCACTTAACTTGAAAAAGTTTGACAGAGCCTCCATCCGACaccat
aaaaaaacattaatCATGAAATTAATGCTACTTTAGCTACCAATACTACC
CATCATGCTAACATCACCCAATCAAAATGTGCCACAGGAAAATTATCAAC
TTTGATTGACTtggtttttttttggaagatCTGTTAACAGCGGCCTATCT
TATTAAAATATATGAgtgatttgttttgtttgttcaCTGATAtttattct
ctggcgtcaatcagtaacatAAATAAAGTCTGGAATACACAGGGATGAGG
TTGAGTTTTGATAAGTTTATTATTTATGGTGTTTGACCAGGCCGATGTTT
CTTTTTAAAGTCTGGAAGAGCCCCTGTGAATGTTAAAATACGCAGTGCGG
ACCGCACATTCAGTCTGGGGTGTCCGTGGTAAGTCTCAaaaaagtaatgt
taaaatCCCCGGACGCGCAACAAGAAAATCTCCGGAGTCCGAGGAATCTG
AATTTCAAggaatttcaagcaaaaaaaagccTAACAAAATCTAACAACTG
ACTGAGGCAATTTTAAGATCCATCAGAGCTACTACAATGTATAAATACAT
ATCTGATCAAATATTTTCAGAcataaattgaaatatttttcataatagGA
ATTAACGAATATGAAAATTTGCATGGGAATAATTCTGTTAAATTGTATTA
TTCGTCAGGTACTATGTGAGCATTGTATTGCTGTATTGTTGGAATaggaa
agagaaaagaaatCTAGCCTAGCCTATAATCATCAGCTATCAGGGGGTGT
TAAACAAATATAAGAgcttatttatataaaaaacgcaCAGTTTTTCCAAG
CTGATGAATGTGGGGGAAAtttctgtttttaaataagTCCTTAAAAGGGG
GGCTAAAGTAATTTGACAGATGTGTGCCCACAATATAGACTCCCTAAATC
CCAGACTAAAAAGTTAGTAAAATATGAGTTTTTAAAATAGTCAATGTACG
GGTAAAAAAATGGAGGTCTTCCGCGCAAGAAGTGGATATAAATTGTTGTC
CTGTTGTCcatgaatgttttgaaatcaaagtattTATTATTTGGTCTTAT
AATCCGCGTCATGTCAACCTCAAGTGTATAAAAAAAGcaagattttttat
atattttctccTTCTTTTACACTAATGATACATTTGATGCTCTCAATTAG
ACGTTTTACTGTTCAATAGGTTCccgttttcgatcaaattaaAATCGCCT
TCAAACTTCctgaagaaactctcataagTGGCAGTTTATTATTTCCTAAA
AGCTAATTTTATGGTGAAGATAATCCCATTCTCTTTCATTTGAagcataa
aaaagtatttacaaGAAATTCTCACACTACTCTATGTACTCCTGTGGTTG
ATGAAAACTAATTAAAATTCCCCTTAAAGATAAAtttagagagcatcaac
aatACCATCTTTGTCATCCTAAGTGATTTTGATGCGCAAGCACTGGCGTT
TGCAATTAAGGGAACCCTATAGTCAAATCTGTCGCAAATCGAAATTAAAC
GGCCTGCTTCTTTTCTGTGTTTATGTAGACAGTCCGTAACAACGGTCCTT
GGATTTCACAATACGACTAGGGAGATAATAACACATTCCTCAACCCATAG
AAAAGGATTGGATATTAAAACTCCATTATATTTTGAACTTGGATTCTTGC
GCAATCAATAATTGAAGTAAAGATGGGGGGGTGAAGCAATGGATAAAATG
GATGGAGTTAGATAAAAATCTGACAATTTTGTGACTTTCTGACTCAGaag
attcataaaaaaattaaaaattatcaggcattttcagttataactcGAGT
TTGGTTCAAGAAAATGGCTTGTAGTTTTCAAATCATATACTTCCATTATA
GAGTAAAATTTTTACATAAAGTTGACAACaattttgaaagccaaatttga
aattgaGTGGTAGGAAGACAGGCATATGCGTGACGGAGGGGACGCCCTGT
Ctgtcactgatttttgctaatatatatttcaaagacgaaataaaatatca
aaaagtggCTTAGTCCTGACTGATACTTTCAAATCaatggtaatagctcc
tgaaataatagaacttttgccatgaaatgtaaattcctaacttttattta
gcttcaaaaaaaagaaaaaagatttgacacctacaaattttcacaccttg
agcatgatggcATTCCTGACAGAAAGGTGTCATAAGAATTAACACTGttt
caatacaaatttattttttatgtcttaTCGTTTAAATCGTagtttattga
atatttaggataaaataagcattttagactTTAGGCTTAACTTTTTTcta
atacaatagctatttataagaaaaaaggaaattttccgtttttgctcact
ttgggcatgatgagcgacgtcatcaaaaaagttttttcgtcaaaagttac
cttatgtgccaaatttcatccaaaaagac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060452-exon-scaffold_341-1491911889:151857..154885 | TCONS_00060452-exon-scaffold_341-1491911889:151857..154885 | Clytia hemisphaerica | exon |
| TCONS_00060452-exon-scaffold_341-1510915933:151857..154885 | TCONS_00060452-exon-scaffold_341-1510915933:151857..154885 | Clytia hemisphaerica | exon |
| TCONS_00060452-exon-scaffold_341-1575043694:151857..154885 | TCONS_00060452-exon-scaffold_341-1575043694:151857..154885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:151857..154885 . |
Blast
The following BLAST results are available for this feature:
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