TCONS_00060350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060350
Unique NameTCONS_00060350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060350 ID=TCONS_00060350|Name=TCONS_00060350|organism=Clytia hemisphaerica|type=transcript|length=443bp
AAGCAGAGCTGTTCACTTCGAAAGCGTATGTTTCATGGATACTGATTCTT
TCCTCCTCTGCCTGAGACGTTTCATTTGTCGTCGTGGTTCAGTTCGTACT
ATCCGCTGTGATAATGGCACAAACTTTGTTGGTGCTAACAACGAATTGCA
GAAAGCTCTCCAAGAAATGGATACAGATAAAATCAAAGACAACCTCCTTC
GTTATGGGACAGATTTCGTCATCAATTGGATCCATAACCCGCCATATGGA
AGTAACTTTGGCGGTGTGTGGGAACGTCTCATTCGGTCAGCACGAGCAAT
TTTGAATGACCATGGTCAATCGTTGAATGACGAGTCATATCGTACATTCT
TAGTTGAAGTTGAGGGAATCATCAATTCTCGACCCCTCACAACTGATGGA
CTTGCTGACCCAGAATGTCCCAACATATTGTCACCTATCAANN
Run BLAST on NCBI

protein sequence of TCONS_00060350-protein

>TCONS_00060350-protein ID=TCONS_00060350-protein|Name=TCONS_00060350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
SRAVHFESVCFMDTDSFLLCLRRFICRRGSVRTIRCDNGTNFVGANNELQ
KALQEMDTDKIKDNLLRYGTDFVINWIHNPPYGSNFGGVWERLIRSARAI
LNDHGQSLNDESYRTFLVEVEGIINSRPLTTDGLADPECPNILSPIX
Run BLAST on NCBI

transcript from alignment at scaffold_340:169175..169617

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060350 ID=TCONS_00060350|Name=TCONS_00060350|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at scaffold_340:169175..169617 (Clytia hemisphaerica)
NNTTGATAGGTGACAATATGTTGGGACATTCTGGGTCAGCAAGTCCATCA
GTTGTGAGGGGTCGAGAATTGATGATTCCCTCAACTTCAACTAAGAATGT
ACGATATGACTCGTCATTCAACGATTGACCATGGTCATTCAAAATTGCTC
GTGCTGACCGAATGAGACGTTCCCACACACCGCCAAAGTTACTTCCATAT
GGCGGGTTATGGATCCAATTGATGACGAAATCTGTCCCATAACGAAGGAG
GTTGTCTTTGATTTTATCTGTATCCATTTCTTGGAGAGCTTTCTGCAATT
CGTTGTTAGCACCAACAAAGTTTGTGCCATTATCACAGCGGATAGTACGA
ACTGAACCACGACGACAAATGAAACGTCTCAGGCAGAGGAGGAAAGAATC
AGTATCCATGAAACATACGCTTTCGAAGTGAACAGCTCTGCTT

Coding sequence (CDS) from alignment at scaffold_340:169175..169617

>TCONS_00060350 ID=TCONS_00060350|Name=TCONS_00060350|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_340:169175..169617 (Clytia hemisphaerica)
NTTGATAGGTGACAATATGTTGGGACATTCTGGGTCAGCAAGTCCATCAG
TTGTGAGGGGTCGAGAATTGATGATTCCCTCAACTTCAACTAAGAATGTA
CGATATGACTCGTCATTCAACGATTGACCATGGTCATTCAAAATTGCTCG
TGCTGACCGAATGAGACGTTCCCACACACCGCCAAAGTTACTTCCATATG
GCGGGTTATGGATCCAATTGATGACGAAATCTGTCCCATAACGAAGGAGG
TTGTCTTTGATTTTATCTGTATCCATTTCTTGGAGAGCTTTCTGCAATTC
GTTGTTAGCACCAACAAAGTTTGTGCCATTATCACAGCGGATAGTACGAA
CTGAACCACGACGACAAATGAAACGTCTCAGGCAGAGGAGGAAAGAATCA
GTATCCATGAAACATACGCTTTCGAAGTGAACAGCTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037973XLOC_037973Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060350-proteinTCONS_00060350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060350-exon-scaffold_340-1491911889:169175..169617TCONS_00060350-exon-scaffold_340-1491911889:169175..169617Clytia hemisphaericaexon
TCONS_00060350-exon-scaffold_340-1510915933:169175..169617TCONS_00060350-exon-scaffold_340-1510915933:169175..169617Clytia hemisphaericaexon
TCONS_00060350-exon-scaffold_340-1575043694:169175..169617TCONS_00060350-exon-scaffold_340-1575043694:169175..169617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:169175..169617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55637	2.65007	2.40548	1.4682	5.43063	5.0114	4.12242	3.39715	1.70475	1.91365	1.53606	1.01316	0.705837	1.49679	0.605819	0.739621	1.02435	0.325855	1.00207	1.71656	0.878697	1.40899	0.232176	0.83633	0.717778	1.0777	1.17664	1.75606	1.29543	0.521427
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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