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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060337 ID=TCONS_00060337|Name=TCONS_00060337|organism=Clytia hemisphaerica|type=transcript|length=1058bp
AAACAGTTTTTACAGGTGAATGGATGAGAACCAATCGTGGAGGCAATACC
TAAACAGGGAGGATCAAGTGATTTAATTCCACCAGAAATGGTAATTGTTT
TACCTTGTATTAAAACCTTTTAATTGTTTGATGGTACAAAAACAGACTGG
GCAGAATAATATTTACTTTCATTACATATTTCTTTATATTGTTGTGGGTG
ATTCTCCTTCCAAATCTNATTCCACCAGAAATGGTAATTGTTTTACCTTG
TATTAAAACCTTTTGCTTGTTTGATGGTACAAAAACAGACTGGGCAGAAT
AATATTTACTTTCATTACATATTTCTTTATATTGTTGTGGGTGATTCTCC
TTCCAAATCTCATACTTGCAGCAGTTTTTATGTTTTAATTCAGTGCTACA
ATTTTTCCAGagctttttttctgaaaacaaagTTTTAGTGGACTTTCTTC
TAATGTGCTGATCATTTTGAAACTCATTCACAAATTTAGGATCCCAAAAA
ACATACAAGACACTTGCTTTCCTTTCTCGCTTGTCAAATCTTTATAAAAG
TCTGAAATGTGTTCACTGGCATGTTTTGGAGGCCTTACAAGTTTTTTAAT
CACTGTAGGGtggtcttttttcaaaaagtcgatGGCACTTTTATGATGAT
TAGTGATCGAGTGCTCATACAATTGTTGGCATCCCTCAAAAATACCTGGT
CCCATGTAACAACAGCCACAGCGTATCAAATGATCACGATACAAACAGCA
AATTTCACATTTGAATGCCAAGTTTGGAGTGTAGGTTTGAGCAGTGAATT
GGGGAACTGGAATAGATGCTTGTAAGTACTCTAACGATTCACTGGCTACA
TCGCCAATGCATATTGGACAGAAAGATCCACAAAGAAATGCATTGATCCT
GGTTTTGAGGAAATCTGAGGTGGACTTGGCACTTAAAAGAATAGATTTCA
ACTTCTGGTCTTTTACCTNTCCAGAAAACATCCTGAGAGTTCTAGCTTCA
TCCGTGGCATCAACAACCGGGTAACCTTGGTAAAGGGTCACACCTCTTTC
AAAAACCT Run BLAST on NCBI protein sequence of TCONS_00060337-protein >TCONS_00060337-protein ID=TCONS_00060337-protein|Name=TCONS_00060337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
VFERGVTLYQGYPVVDATDEARTLRMFSGXVKDQKLKSILLSAKSTSDFL
KTRINAFLCGSFCPICIGDVASESLEYLQASIPVPQFTAQTYTPNLAFKC
EICCLYRDHLIRCGCCYMGPGIFEGCQQLYEHSITNHHKSAIDFLKKDHP
TVIKKLVRPPKHASEHISDFYKDLTSEKGKQVSCMFFGILNL Run BLAST on NCBI transcript from alignment at scaffold_340:26747..27804 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060337 ID=TCONS_00060337|Name=TCONS_00060337|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_340:26747..27804 (Clytia hemisphaerica)
AGGTTTTTGAAAGAGGTGTGACCCTTTACCAAGGTTACCCGGTTGTTGAT
GCCACGGATGAAGCTAGAACTCTCAGGATGTTTTCTGGANAGGTAAAAGA
CCAGAAGTTGAAATCTATTCTTTTAAGTGCCAAGTCCACCTCAGATTTCC
TCAAAACCAGGATCAATGCATTTCTTTGTGGATCTTTCTGTCCAATATGC
ATTGGCGATGTAGCCAGTGAATCGTTAGAGTACTTACAAGCATCTATTCC
AGTTCCCCAATTCACTGCTCAAACCTACACTCCAAACTTGGCATTCAAAT
GTGAAATTTGCTGTTTGTATCGTGATCATTTGATACGCTGTGGCTGTTGT
TACATGGGACCAGGTATTTTTGAGGGATGCCAACAATTGTATGAGCACTC
GATCACTAATCATCATAAAAGTGCCatcgactttttgaaaaaagaccaCC
CTACAGTGATTAAAAAACTTGTAAGGCCTCCAAAACATGCCAGTGAACAC
ATTTCAGACTTTTATAAAGATTTGACAAGCGAGAAAGGAAAGCAAGTGTC
TTGTATGTTTTTTGGGATCCTAAATTTGTGAATGAGTTTCAAAATGATCA
GCACATTAGAAGAAAGTCCACTAAAActttgttttcagaaaaaaagctCT
GGAAAAATTGTAGCACTGAATTAAAACATAAAAACTGCTGCAAGTATGAG
ATTTGGAAGGAGAATCACCCACAACAATATAAAGAAATATGTAATGAAAG
TAAATATTATTCTGCCCAGTCTGTTTTTGTACCATCAAACAAGCAAAAGG
TTTTAATACAAGGTAAAACAATTACCATTTCTGGTGGAATNAGATTTGGA
AGGAGAATCACCCACAACAATATAAAGAAATATGTAATGAAAGTAAATAT
TATTCTGCCCAGTCTGTTTTTGTACCATCAAACAATTAAAAGGTTTTAAT
ACAAGGTAAAACAATTACCATTTCTGGTGGAATTAAATCACTTGATCCTC
CCTGTTTAGGTATTGCCTCCACGATTGGTTCTCATCCATTCACCTGTAAA
AACTGTTT Coding sequence (CDS) from alignment at scaffold_340:26747..27804 >TCONS_00060337 ID=TCONS_00060337|Name=TCONS_00060337|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_340:26747..27804 (Clytia hemisphaerica)
GTTTTTGAAAGAGGTGTGACCCTTTACCAAGGTTACCCGGTTGTTGATGC
CACGGATGAAGCTAGAACTCTCAGGATGTTTTCTGGANAGGTAAAAGACC
AGAAGTTGAAATCTATTCTTTTAAGTGCCAAGTCCACCTCAGATTTCCTC
AAAACCAGGATCAATGCATTTCTTTGTGGATCTTTCTGTCCAATATGCAT
TGGCGATGTAGCCAGTGAATCGTTAGAGTACTTACAAGCATCTATTCCAG
TTCCCCAATTCACTGCTCAAACCTACACTCCAAACTTGGCATTCAAATGT
GAAATTTGCTGTTTGTATCGTGATCATTTGATACGCTGTGGCTGTTGTTA
CATGGGACCAGGTATTTTTGAGGGATGCCAACAATTGTATGAGCACTCGA
TCACTAATCATCATAAAAGTGCCatcgactttttgaaaaaagaccaCCCT
ACAGTGATTAAAAAACTTGTAAGGCCTCCAAAACATGCCAGTGAACACAT
TTCAGACTTTTATAAAGATTTGACAAGCGAGAAAGGAAAGCAAGTGTCTT
GTATGTTTTTTGGGATCCTAAATTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060337-exon-scaffold_340-1491911889:26747..27804 | TCONS_00060337-exon-scaffold_340-1491911889:26747..27804 | Clytia hemisphaerica | exon |
| TCONS_00060337-exon-scaffold_340-1510915933:26747..27804 | TCONS_00060337-exon-scaffold_340-1510915933:26747..27804 | Clytia hemisphaerica | exon |
| TCONS_00060337-exon-scaffold_340-1575043694:26747..27804 | TCONS_00060337-exon-scaffold_340-1575043694:26747..27804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:26747..27804 . |
Blast
The following BLAST results are available for this feature:
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