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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060155 ID=TCONS_00060155|Name=TCONS_00060155|organism=Clytia hemisphaerica|type=transcript|length=2013bp
GCGGGGCATTATTGGCGATCGCCTGCGGGCGGTCGTTTTTCTTTCCATTG
GCGTTTGGAAGAAATGATCACGTGCTGAAATTTAAGGAAAATGAAACCTT
CAATGAAAACTGACCAATCGAGTTGCTTGATTCATTCTAGTCCAATCAAA
TCTAATATGGTTGTCACGTGTCTAATGGTCATTTGGCTAATTTCAAAACC
ATGCTGTTCCTTTCTTCGCGGTTAACCTTCGACAAGTTCGGACATTGTTC
TACCACTCGTATTTTTGAAAGCAAAATGCCCAAAAAGACAAAACTTCAAT
TCAAAACGGATTCAGACTCCAACCAAGTCACTAACCATTCTACAGACTCA
AGACAAGTTGAACCTGCAAAAATCAACTCTCCTGGAAgATCTACTGAGGA
TGATAATGAAGCCCCTCCTCCTTCAACTCctaaaaaacaaagaatgaGCT
TTGCAGATTCTGAAACAAGAGAGGCCCATGGCTATGTCATAAGATTGTAT
GATGTCACAACATCCCCCTCAAAAGTCAAATATTTCAATGCGGTGATTGA
TAATGGTATACAAGAATCAAATATAGTGTGCTACAATCCTGATCTTCATG
AAGCCTTTTCATCAGCCAAACTCAAGGATTGTCcaatcaaaatttctaaa
ttcacCGTTGAAAATGATCAATACAGAAATCAAACTAAATTCAAACTTGG
TTCTGCAGGTAATGCTGAGTTTTCGGACATGAACATTCCTTATAACTTAG
ttgcaaaaaaattagaatGGGTCAATGCATTTACTGACTTGATCAATGTT
GAGAATATCGCACTTGAGAGTATCATTAACGTTGCGTGTCATGTTACTCT
TGTTGGAGAAGCCTTTGACGAAGACACAAAGTTCGGCAGAAAGAAAAAGA
TGAATGTAAGAATTCATGACAATACCATAACAGAAAGTATCCGGCTAGTT
CTGTGGGGTAACCATGCACAGAAGATCACAGCGAGTGGCTCCTACCGCTT
CAAAGAACTCAGAGTAAAAACGTACAATGGAAGATATCTGACCACAACGG
CCTACACCGAGATAACCCAATCTAATGAATCATATGAGGTGAGATTGGAT
GATAATTACAACTCTCTTAACCAAGAAACTATTGTTGCCTTCCCTGCAAT
AGGAATAAACAAACTGGAAACCAATTATTATTGTTCCATCTGCAACCATA
AAGTTATCAAGCTTGGCAAGTATGGCATGTGTAACAAATGTCCCATGAAA
GCACTCCTCggtgagaaattttttgatgtcaaaGTTTCCTTTAAAAATGG
TAGTGAAAATGTAATGGTCACATTTCCACATAACATTTTCATTCAATTAA
TTGAAAAGGTCAATGCAGATCATAATGATCTAGACGACATTGAGGAAAAA
CTTCTGGTTACAAAAGACCTTTCTGTTAAGTACAAACAAATGTCAAGAAT
TGCTACTGCAATCTTATAAATTTGTGACTTAGAGCAAATGGGACTCATCG
TGTTTTTTGTTCATTTATCTTTCAGTTTATATTTTATCTGATTCTACATC
ATCATTTTGTACAGTAACATATATGTAgatgtatatatatatatctatAT
AGATTTTATCAGTTTTTATTGATGTAAGCCTAGTTTGTGCTTTTGAACCA
AAGAGCTTTTACCATTTTAATTTTAACACGTCCTTCTGCCCCTTACTGAC
AGTAAAAGTACGAAATAGACTTCTCCATATAAATCAATTAAATGCATAAC
TTGTCTTAGAACtcgtttcttctttttgttgtaAAAAAGCTTCTTTTTTT
CAGTAAGGATTAAAATGGCAGTCTTgtaaatagcaattaaagtttgGCAT
TTTCTAGATAGATCGTTCTTATTTCATACTACATATTTTTTAGGATagga
ttttttttatcataaagCTAGGAAAAGGTGTACTTTCATTTTAAATGTAT
TCTACTGGTTAGAGTTTTTAATTTGACTGTATACAGATTTAGATGTGAAT
AATTTGTGTAACC Run BLAST on NCBI transcript from alignment at scaffold_336:29663..33569+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060155 ID=TCONS_00060155|Name=TCONS_00060155|organism=Clytia hemisphaerica|type=transcript|length=3907bp|location=Sequence derived from alignment at scaffold_336:29663..33569+ (Clytia hemisphaerica)
GCGGGGCATTATTGGCGATCGCCTGCGGGCGGTCGTTTTTCTTTCCATTG
GCGTTTGGAAGAAATGATCACGTGCTGAAATTTAAGGAAAATGAAACCTT
CAATGAAAACTGACCAATCGAGTTGCTTGATTCATTCTAGTCCAATCAAA
TCTAATATGGTTGTCACGTGTCTAATGGTCATTTGGCTAATTTCAAAACC
ATGCTGTTCCTTTCTTCGCGGTTAACCTTCGACAAGTTCGGACATTGTTC
TACCACTCGTATTTTTGAAAGCAAAATGCCCAAAAAGACAAAACTTCAAT
TCAAAACGGATTCAGGTAATAAGCAATTAACTGTTTTGTAATCACAGGGA
AAATATGGTTTTGTTGATTTACAAAAAAACTATTCCTTTACTCTAAGAAA
CTCTGTTGGCCATTATTTGCCCTTTTGCTTTGCTTGAAACCCACGAACTG
AATcagcattttttatttattctacAGACTCCAACCAAGTCACTAACCAT
TCTACAGACTCCAACCAAGTCACTAACCATTCTACAGACTCAAGACAAGT
TGAACCTGCAAAAATCAACTCTCCTGGAAGTAAGACTTTCTTCTTCATGT
ATTAGATTGAATTTAGGTCAAAGTTTTATAGCTACAGGAAGGGATACGCC
AAAGGTTTTTTTCtgagaagaaaaaagaagataaatAGGTCTTAATTAAA
GAAGTACAGGAATTTTTGAGAAATGACATTCTCCAGGGGTAAACTAAGGG
TCTGTTACATGTACCATTCTCCCCGCTgctatgaaatttttttgcattAC
ATGCATATTTTATTTCACATCGCTTcaggcaattttcatttttggtgaGA
TTTTCTGTCTGTTGTCGACGGCAAAATGATATTTTGCCCTATTTTGGTTA
GGCGAagggttggcagacgatatcatccaccaggatgcaagtgaaatttt
tcaatctacggacctagacgggggttcggttattatcagttagggttagg
gttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNatgcaagtgaaatttttcaatctgcgg
acctagacgggggttcggttattatcagttagggttagggttggagctcg
agagtcacaatataaggccgaaggcctttTTAGGGGCATCCGTACCCTGT
GACCTAActtagggatccttgtagggatccccgtagggatccttgtaggg
gcaccggtagggttgggagctttcttaataaaggtctgtaaattacacac
taaaagtatttgtgaatgacagcatTTGGCCGTGTCACGTTGGCGCTagc
ggttaggcattgggtttgtaaaccaaggttgcttgtaTTTGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNActagagaaagtcagaaaatcaggatagaagataggaaagtagaaaa
taggtggaaaataagagaggatgcatcctggtggatgatatcgtttgcca
acctaGGCGAAGAAAGTtgccaaaattaatttaaattattCCAACATACC
AAAGTATTCTTCGCCAAAAAAATAGCAACTCAtgcttttgtatttttaaa
tttcaggATCTACTGAGGATGATAATGAAGCCCCTCCTCCTTCAACTCct
aaaaaacaaagaatgaGCTTTGCAGGTAATGACCAATTTTTCTGCTTGAA
TGGGCTTAAATCACAGGCTTATAGATATTACAATGAGATTCTATGCACTT
GTTTCTTGGATGATGAATCTCTTATTGGCCTTGGTTAAATATCATTGCAG
CAAAATTACCCGTCGCACGACTTCTCGTGAAATACTTAAATATTATACTT
GTTCTGGATATTATTTACTTGCGATATTACTTATTTTGCCTTTATAATCA
AATCTTGAAACAGCTTTGATTGTTAGAGGTGCCAAAAGAGAAGTTGTTTT
AGTCTCCCCAATTCTAGAAATAATACTTTTTGAGCTGGAAATTGGGCTCA
TCATTTTCCAAATGTGGATATGTTTAATAGGTGTCCTTTTATCATACTAG
ATTCTGAAACAAGAGAGGCCCATGGCTATGTCATAAGATTGTATGATGTC
ACAACATCCCCCTCAAAAGTCAAATATTTCAATGCGGTGATTGATAATGG
TATACAAGAATCAAATATAGTGTGCTACAATCCTGATCTTCATGAAGCCT
TTTCATCAGCCAAACTCAAGGATTGTCcaatcaaaatttctaaattcacC
GTTGAAAATGATCAATACAGAAATCAAACTAAATTCAAACTTGGTTCTGC
AGGTAATGCTGAGTTTTCGGACATGAACATTCCTTATAACTTAGttgcaa
aaaaattagaatGGGTCAATGCATTTACTGACTTGATCAATGTTGAGAAT
ATCGCACTTGAGAGTATCATTAACGTTGCGTGTCATGTTACTCTTGTTGG
AGAAGCCTTTGACGAAGACACAAAGTTCGGCAGAAAGAAAAAGATGAATG
TAAGAATTCATGACAATACCATAACAGAAAGTATCCGGCTAGTTCTGTGG
GGTAACCATGCACAGAAGATCACAGCGAGTGGCTCCTACCGCTTCAAAGA
ACTCAGAGTAAAAACGTACAATGGAAGATATCTGACCACAACGGCCTACA
CCGAGATAACCCAATCTAATGAATCATATGAGGTGAGATTGGATGATAAT
TACAACTCTCTTAACCAAGAAACTATTGTTGCCTTCCCTGCAATAGGAAT
AAACAAACTGGAAACCAATTATTATTGTTCCATCTGCAACCATAAAGTTA
TCAAGCTTGGCAAGTATGGCATGTGTAACAAATGTCCCATGAAAGCACTC
CTCggtgagaaattttttgatgtcaaaGTTTCCTTTAAAAATGGTAGTGA
AAATGTAATGGTCACATTTCCACATAACATTTTCATTCAATTAATTGAAA
AGGTCAATGCAGATCATAATGATCTAGACGACATTGAGGAAAAACTTCTG
GTTACAAAAGACCTTTCTGTTAAGTACAAACAAATGTCAAGAATTGCTAC
TGCAATCTTATAAATTTGTGACTTAGAGCAAATGGGACTCATCGTGTTTT
TTGTTCATTTATCTTTCAGTTTATATTTTATCTGATTCTACATCATCATT
TTGTACAGTAACATATATGTAgatgtatatatatatatctatATAGATTT
TATCAGTTTTTATTGATGTAAGCCTAGTTTGTGCTTTTGAACCAAAGAGC
TTTTACCATTTTAATTTTAACACGTCCTTCTGCCCCTTACTGACAGTAAA
AGTACGAAATAGACTTCTCCATATAAATCAATTAAATGCATAACTTGTCT
TAGAACtcgtttcttctttttgttgtaAAAAAGCTTCTTTTTTTCAGTAA
GGATTAAAATGGCAGTCTTgtaaatagcaattaaagtttgGCATTTTCTA
GATAGATCGTTCTTATTTCATACTACATATTTTTTAGGATaggatttttt
ttatcataaagCTAGGAAAAGGTGTACTTTCATTTTAAATGTATTCTACT
GGTTAGAGTTTTTAATTTGACTGTATACAGATTTAGATGTGAATAATTTG
TGTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060155-exon-scaffold_336-1491911889:29663..29977 | TCONS_00060155-exon-scaffold_336-1491911889:29663..29977 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1510915933:29663..29977 | TCONS_00060155-exon-scaffold_336-1510915933:29663..29977 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1575043694:29663..29977 | TCONS_00060155-exon-scaffold_336-1575043694:29663..29977 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1491911889:30170..30241 | TCONS_00060155-exon-scaffold_336-1491911889:30170..30241 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1510915933:30170..30241 | TCONS_00060155-exon-scaffold_336-1510915933:30170..30241 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1575043694:30170..30241 | TCONS_00060155-exon-scaffold_336-1575043694:30170..30241 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1491911889:31569..31637 | TCONS_00060155-exon-scaffold_336-1491911889:31569..31637 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1510915933:31569..31637 | TCONS_00060155-exon-scaffold_336-1510915933:31569..31637 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1575043694:31569..31637 | TCONS_00060155-exon-scaffold_336-1575043694:31569..31637 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1491911889:32013..33569 | TCONS_00060155-exon-scaffold_336-1491911889:32013..33569 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1510915933:32013..33569 | TCONS_00060155-exon-scaffold_336-1510915933:32013..33569 | Clytia hemisphaerica | exon |
| TCONS_00060155-exon-scaffold_336-1575043694:32013..33569 | TCONS_00060155-exon-scaffold_336-1575043694:32013..33569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:29663..33569 + |
Blast
The following BLAST results are available for this feature:
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