TCONS_00060104 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060104
Unique Name	TCONS_00060104
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	355

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_334:327840..333033+

transcript sequence

>TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=355bp
GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT
GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTACAAA
GGAGGCGTCGTCTTGCGGGCACAAAATTGGAAGATGCATCGaaaaagctt
ACAAAGAGTTTCTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCC
GATGCAGCCCTCGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAG
AAAAAGAAGCCACAATCAAGGAAAACTTACTAGGAGATGattataaaata
aatatatgaTAAAATCGTgactaaatttctttttgtctcAAGCTCAAAAC
TTTAA

Run BLAST on NCBI

transcript from alignment at scaffold_334:327840..333033+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=5194bp|location=Sequence derived from alignment at scaffold_334:327840..333033+ (Clytia hemisphaerica)
GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT
GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTAAGTT
TTTTTCATTATAAGTCTACTCTTGCTAAGTAGAATTGTGATCACTTAGAC
TTGAAGACaaatgaacaatttttttttaggttAGATCAGGATTCCTTGAC
TTGCTAATCCAGTAAACAGACTAAAGTAGCAGCCATAATATTATaacctt
tttatttaaattttctttcttcagaCAGACTTAGAGGAGACCAACGAAGA
TGATTGGAGAACTTGAATAGTTCTAAataatttttgacatttcagCACTT
AAGTAACAGATTGaaactttggaaaaaattttgaattgctTAGCTTATTG
TAAAAATATACAGCTTAAAGTTTTGATTTCGTATGTACAGCatctgaccc
cgagaatgtagtaaaccccgagaatgtaggtttctcatttttaagcattg
tagccttaacgatagttcaacttcatgaaaagttgtttcagggcatactg
ttacatattacttattatttctagacataaaattttaacttgaattaacT
TTTTCCAACGGAAACCTGAATCGAAAttgattggatactacccgaattgg
gacatttttaaaatcttctctaaatcgaaatctattggaattaagttatg
atgatagggtattttcttattcctaatgaactaaggaaacGGGGGGAAAT
AGTCCATTTccatatttattgttctaagttagatattttgacgaaaatgt
ttaacctaccttttggggttagttgacctacaatttgggggGAGGGGGCC
TTCATAACctgacataaaaagtctgtcaaattatataaaacttgtttgtt
gtactttcatcACATGAATCTGNtcataacccgacataaaaagtctgtca
aattatataaaacttgtttgttgAAGTACAACATGACATGAATCATAAGC
CTTATCCACTAAATCTAAAGATAGTACGTATTTCATATaaacatggaatt
attatagacactggaaaaacaacgggctgattttttccaatttctcatgt
acaagccttgtccgctTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattaaatgatttttcgtagc
attttaattgtatttctcatcaaaatacacttatccaattcccaaatgag
actttaagttctccttcgagattcaaactcatctagGTAATTACTTATTA
AACGTCGTTAAGACGTTTTCAAtttcgagaaagatgcaaaaacatgctat
gtaccttaagagaactaaattttgcggtttttgctgatttaggcccaaac
cgtaaaataaaattcccgcaaaatttttcaaatgcgaaaaacaaaggtcg
aataattcacagtacggctctaattttctttcaagtgagaaatccgcaaa
attaagttcccgcaaatattaaatcttaaactgcgaaccgcaaaaaattg
ttcccttaaggtactttaatcgtagaaattttagcgagactaattttagc
gtatattagcgagtcgtgaaaatcttgatttttttttaatttattttagc
gaatcaagatttcaaaaaatttcgcgcggataaattttagcgaatactcg
tattacattattgactgagttcgttttctagcatttctttgcactgaaac
ccttcctgttgataaaaatatatcaaggcaatataaccagaaatttcgcg
tggataaattttagagatctgtcgattcggcatgttttagcgagatttat
tttaacgaaaatagggaaaactcgctcaaacgctaaaattagtctcgcta
aaattttaaattaaagtACAAGAAATTGtatattgacaccagaaattttt
aaacttcaacctcaaaacgAACGATCATCAAACGAACACTTAACTTAAAG
GTAGAAATTTCTGCGACTTTGGCCATAATTCGCGAAATCTTCTTAGGCAA
AATTAATATCGAGCAggcaattcgcgaaaattaattgatttcattcaatt
tttcagtcGTCAGAGATAGAAAGTGCTTACAATGATCTGTAGTCAAAGTG
TTTCGATCTTTTTTATTGCAAAGCGCATATTTGAAATGgttgatttttat
ttaatttgtggtaatttcttccgcgaaacgCGCAATTTTGGAGAGCTTAA
TTTGCGAAAATTTCTTGTCCGTAGTAAtatcttcccttaaggtaatcttT
TTTGTGGGTCATCCGGTATGTCATTGTCTGTTGTCAATGATTACAGTCCC
AACACTTGTAGTTATTATTTGAGATTATGTCGCTACTTGGAAATTACGTA
cataaaatttatttcaaactttctaaTTAGGTACAAAGGAGGCGTCGTCT
TGCGGGCACAAAATTGGAAGATGCATCGGTGAGtcgtaaccccccccccc
cgatttttcgtttttattgcagtaactgaaaaaaatcacatgGGGTTCTA
GCAAAGCCCAGCAAGACTTTCTTGAAtgtaaaaatattaaagaaCTTTTG
TTCATGTCACGCCTGATTAGAATCTTTTCAACTCAGGAATACTTTAATAG
GATAAGGGAGCTTCGCGAAAGTTTcactttttcgcgaaagtttatctcgA
AATTCTGCaacttttccatttttccaattcctaatttctcgacctctgAA
GCTATTGAGCtagcctggttaaccaagccagtttttacaagGCCACGATA
CGGCTAAAGGCAATTATGTATAGCGTTATCGGTGCTGTAACtatttttat
gatgtacggaattttaagtttgccttgaaaaactGGCTAGAGCGAATCGT
ACGTTTATAAAATGAACGGAGAAGTCGGCGAGACTTCTTTGAAAACGCTT
TTCACTTCTCAacgaaaaactttttgaaggtATTTTTGTATCTGGGACCT
CATGCCACTAAatgttttccctttttttagaaaaagcttACAAAGAGTTT
CTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCCGATGCAGCCCT
CGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAGAAAAAGAAGCC
ACAATCAAGGAAAACTTACTAGGAGATGattataaaataaatatatgaTA
AAATCGTgactaaatttctttttgtctcAAGCTCAAAACTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037816	XLOC_037816	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060104-exon-scaffold_334-1491911889:327840..327932	TCONS_00060104-exon-scaffold_334-1491911889:327840..327932	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1510915933:327840..327932	TCONS_00060104-exon-scaffold_334-1510915933:327840..327932	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1575043694:327840..327932	TCONS_00060104-exon-scaffold_334-1575043694:327840..327932	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1491911889:332220..332267	TCONS_00060104-exon-scaffold_334-1491911889:332220..332267	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1510915933:332220..332267	TCONS_00060104-exon-scaffold_334-1510915933:332220..332267	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1575043694:332220..332267	TCONS_00060104-exon-scaffold_334-1575043694:332220..332267	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1491911889:332820..333033	TCONS_00060104-exon-scaffold_334-1491911889:332820..333033	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1510915933:332820..333033	TCONS_00060104-exon-scaffold_334-1510915933:332820..333033	Clytia hemisphaerica	exon
TCONS_00060104-exon-scaffold_334-1575043694:332820..333033	TCONS_00060104-exon-scaffold_334-1575043694:332820..333033	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_334	supercontig	scaffold_334:327840..333033 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89651	2.48444	0.275135	0	44.165	49.3058	71.3533	78.6734	97.8078	68.4596	70.6223	55.821	56.4973	73.1444	63.8296	48.1872	89.5757	67.1913	74.6447	67.1883	51.0895	44.3527	24.9894	24.5536	42.4109	47.7922	37.0527	33.3148	34.9997	18.7786

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060104 vs. Swiss-Prot (Human)

BLAST of TCONS_00060104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00060104 (transcript) - C. hemisphaerica