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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060031 ID=TCONS_00060031|Name=TCONS_00060031|organism=Clytia hemisphaerica|type=transcript|length=2611bpRun BLAST on NCBI protein sequence of TCONS_00060031-protein >TCONS_00060031-protein ID=TCONS_00060031-protein|Name=TCONS_00060031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp LFWRKMPIANYTTANVPTCFVMVGLPARGKTFMSKKLTRYLNWIGVNTKVRun BLAST on NCBI transcript from alignment at scaffold_333:242897..261552- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060031 ID=TCONS_00060031|Name=TCONS_00060031|organism=Clytia hemisphaerica|type=transcript|length=18656bp|location=Sequence derived from alignment at scaffold_333:242897..261552- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_333:242897..261552- >TCONS_00060031 ID=TCONS_00060031|Name=TCONS_00060031|organism=Clytia hemisphaerica|type=CDS|length=26352bp|location=Sequence derived from alignment at scaffold_333:242897..261552- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060031 vs. Swiss-Prot (Human)
Match: F264 (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 OS=Homo sapiens GN=PFKFB4 PE=2 SV=6) HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 257/435 (59.08%), Postives = 334/435 (76.78%), Query Frame = 3
Query: 45 NVPTCFVMVGLPARGKTFMSKKLTRYLNWIGVNTKVFNAGEYRRRIYGTVNCKHDFFNPNNPSGQEARMKCVDLALEDVANFLHKEGGQVSILDATNTTKDRRKYVYEQCQKHGIKTFFIESICDDPDIIYQNILEVKLSSPDYKDCGEEEAVKDFIARIRHYEELYETIDIDKEGQLAFLKLINVGQKFLVNLISGYLQTRAVYFLMNIHITPRSIYLTRHGESMLNLKGRIGGDSGLSPRGVKYQQKLSDFIKEQNIPDLKVWTSTLKRTIQTASDVPAISKEQWHAIDELDAGICDNMTYEEIQEKYPEEFARRDQDKYHYRYPRGESYEDLVTRLEPVIMELERQHNVLVVCHQAVMRCLLSYFLDTPASEMPYMEVPLHTIYKLTPIAYGCRVEMFKQDIPCVNTHRQKPTDVRLDRSPDAALSTVPEHE 1349
N PT VMVGLPARGKT++SKKLTRYLNWIGV T+ FN G+YRR + T +FF P+N G + R +C AL DV FL +EGG V++ DATNTT++RR ++ +++G KTFF+ESIC DP++I NI++VKL SPDY + +EA +DF+ RI YE YE++D D + L+++K+++VGQ ++VN ++ ++Q+R VY+LMNIH+TPRSIYL RHGES LNLKGRIGGD GLSPRG ++ + L+ FI +QNI DLKVWTS +KRTIQTA + + EQW ++E+DAG+C+ MTYEEIQ+ YP EFA RDQDKY YRYP+GESYEDLV RLEPVIMELERQ NVLV+CHQAVMRCLL+YFLD A ++PY++ PLHT+ KLTP+AYGC+VE ++ VNTHR +P +V + R P+ AL TVP H+
Sbjct: 37 NCPTLIVMVGLPARGKTYISKKLTRYLNWIGVPTREFNVGQYRRDVVKTYK-SFEFFLPDNEEGLKIRKQCALAALRDVRRFLSEEGGHVAVFDATNTTRERRATIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEDLDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGREFAKSLAQFISDQNIKDLKVWTSQMKRTIQTAEAL-GVPYEQWKVLNEIDAGVCEEMTYEEIQDNYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQAVMRCLLAYFLDKAAEQLPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAVNTHRDRPQNVDISRPPEEALVTVPAHQ 469 The following BLAST results are available for this feature:
BLAST of TCONS_00060031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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