TCONS_00005861 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005861
Unique Name	TCONS_00005861
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1677

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000061:787891..794613+

transcript sequence

>TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=1677bp
TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG
CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGGGTGGTT
CCGGATATCATATCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGC
TTGTGTTGTCACTACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAA
TCTGTTACTTCAATACGTTCGGAGGAAACCCAGTCTCAATGGCAATTGCA
AGTGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGA
AACCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaac
atgaaattatTGGTGATGTCAGGGGTGTTGGATTATTCTTGGGGATCGAG
TTGGTGAAGAGCCGCCAAACTAAAGAACCAGCAACATCACAAGCCAAAAG
AATAAGTTACTTATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTC
CAGGAAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGAC
GACATGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGA
ACGGGAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCT
TGAGAATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACT
TTTTGTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATA
TTcagaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTC
ATTGAAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttc
ttttattacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTC
TGTTGTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTT
TAAACAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGT
AATCCAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaat
TATTACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCG
GTAGAAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCT
AAACGTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATC
TGTATTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataa
aaaaagtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGT
ACTTTTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCA
TAGAAGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGG
TCTTGGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatat
tttaaaattaatatataaaatgctttaaaaatcaatttgaataattttaa
cagatttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTC
GATTATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACA
TAACTAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgag
cagattctgatactccgCCCATTGCAC

Run BLAST on NCBI

transcript from alignment at sc0000061:787891..794613+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=6723bp|location=Sequence derived from alignment at sc0000061:787891..794613+ (Clytia hemisphaerica)
TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG
CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGTATATTT
TTGTATATTGTAGATGATAATTCACTACATACCAGAATTCTTCTCAGACT
GGTTTTCTCTTTTAATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACT
TGCTCATGGGTTAAAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTC
ATTTAAATTGAAAGATTGCTCATCAGTACATTAACTATAATTCAAACGTT
TCTTGTTTGTTTAACTCACAAACCCTTGTAAACGACTTGCTCTATTATTA
CTCGAACCCTCTATCCGTAACATATCATTAAATTCGTCTGGTAGCCTATT
CACAATTTGACCTATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTG
CTCGAGTTATAGACGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTA
TACAttgttggaacggaaattttatgctgattatggaaacccgggTATTA
AAAAGTCTTTCCggacaaaattgcaaacgagcctggagtttgcactcctt
CGGGGCGTTTTTTCGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTA
TACCCTCCAAACACACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATA
TCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCAC
TACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCA
ATACGGTGAGTAAAATGGACCCTCCCTTAGAACTAACATACACtcgagtc
tccataactcgaacactcacggggaacacaaattggCCCAGGATATAGAA
AATTCGAGTTGTAGGATAAGCTCTATAAACAGcagaatctccataactcg
aagatGCTCGAGGGACGGCAACTTTGTTCGAGtggttgaaaattcaaaat
ataggGTAAACTTTATAAGGTTTTGTTACCTGAAGGGACCATAatacttg
ttcgagttaaggaggaATTTGAGTTACAGAAGTTAGAAATAAAAACTTGT
CATAATAGGACCGTTCCTATTTTATTTAGACTCAACGGTATTCCCAACTC
CGTCGGTCGGTACCCCCTGGATGACTATAAAATCAGATCAGCCAAACTTG
AGAAGTCCCGTAAAATACCCTTTTTTCAGTGTACAAgctgaatttaattt
tgctttcaattttagTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAG
TGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGAAA
CCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaacat
gaaattatTGGTGATGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAAT
ACCCAGAGGAGGGTCTGACTGGGAAAGGGGTTTGACCTTAATCGAAAATT
AGTCTGATTTGTACTTCTCTATCAATGAAGTAAAtgcctgaagggctaga
atcgaatctttatcatttctcaggcaagaaaagtgGAGTCTTATAAAATA
TgcaccgtatttttgacgacggattgaatcaaACGATtgctttgttttcg
agtgatatctttttcgaaatttaggtgtaaattttagtttcaatccgtca
TTTGTGTTGAACCAGGCGGACTGCGCTAGGCCGCGCANAAATTCAATCCC
ACAgtccttttcgtcttaattcaaaagtcgtgaaagttattacttgttct
ttgtaattgagtgtaatttgcgtgcaagcgtAATAAACGCGAAGGGTGAT
ggattgaatttcagtcaaacataaaactcaatgtctatttttagattcgc
gacGGTGTGCTATTTGGGAATGATACCAAACAATTATGTTTGAAAGTATT
CTAAATGACGCCTATTGACCTTTAGATTGGGATGTTTATAGCAGAATCCT
TAATTGGATGTGGTGGACAAGTTATATTACCTGCTGGCTATCTAAAACGA
ATATACGCGTAAGTTGTAATATAAATCCACAGCGTTAAACCAAGTTCGCA
GGTAACGGTTCAGTTTCGCTCCTAAacggaatgaagccattctattggtt
agaagagACGTGCAAATCGagtttaaccaatagaatgacttCATTTTGTT
TCGTAGCGAAACGGAACCGGTGCTTGTGAACGTGATTAATCAATACAATC
ATCTGACGTTACATGACAGTCTGGATGTTTATTAGATGTTGTTTTGACGT
TAAAACCTTGGTCATTCATTGTTCTGGTTGAGTTTATTAGGGTAATATCT
GAAGAATCAACTAATAGACCTCATTTTGAAAACTCTTGGCTTGACTACAC
GAAAAAGAAACATGGATAACTGAAGACCAATTTTAGGAAATAGCTATTTT
CAGCTgcgattattatttttttcattcttagCCACGTTCGAAAATTGGGA
GGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAA
ACATGGATTTTGGGCTTTTGAACGACAAGGTATATTTTTGTATATTGTAG
ATGATAATTCACTACATACCAGAATTCTTCTCAGACTGGTTTTCTCTTTT
AATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACTTGCTCATGGGTTA
AAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTCATTTAAATTGAAA
GATTGCTCATCAGTACATTAACTATAATTCAAACGTTTCTTGTTTGTTTA
ACTCACAAACCCTTGTAAACGACTTGCTCTATTATTACTCGAACCCTCTA
TCCGTAACATATCATTAAATTCGTCTGGTAGCCTATTCACAATTTGACCT
ATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTGCTCGAGTTATAGA
CGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTATACAttgttggaa
cggaaattttatgctgattatggaaacccgggTATTAAAAAGTCTTTCCg
gacaaaattgcaaacgagcctggagtttgcactccttCGGGGCGTTTTTT
CGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTATACCCTCCAAACA
CACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATATCCATCGGAAAAC
CAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCACTACAGAAGCCGTC
GCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCAATACGGTGAGTAA
AATGGACCCTCCCTTAGAACTAACATACACtcgagtctccataactcgaa
cactcacggggaacacaaattggCCCAGGATATAGAAAATTCGAGTTGTA
GGATAAGCTCTATAAACAGcagaatctccataactcgaagatGCTCGAGG
GACGGCGAACTTTGTTCGAGtggttgaaaattcaaaatataggGTAAACT
TTATAAGGTTTTGTTACCTGAAGGGACCATaagacttgttcgagttaagg
agaaatTTGAGTTACAGAAGTTAGAAATAAAAACTTGTTATAATAGGACT
GTTCCTATTTTTTTAGACTCAACGGTATTCCCAACTCCGTCGGTCGGTAC
CCCCTGGATGACTATAAAATCAGATCAGCCAAACTTGAAAAGTCCTGTAA
ATACCCTTTTTTCAGTGTACAAgctgaatttaattttgctttcaatttta
gTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAGTGCATGCATGGAAG
TGATACGAGATGAGAAGTTACAAGAAAATGCTGAAACCGTGGGAGAATAT
ACCATGGCCAAATTACgagaattaaaagaaaaacatgaaattatTGGTGA
TGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAATACCCAGAGGAGGGT
CTGACTGGGATAGGGGTTTGACCTTAATCGAAAATTAGTCTGATTTGTAC
TTCTCTATCAATGAAGTAAAtgcctgaagggctagaatcgaatctttatc
atttctcaggcaagaaaagtgGAGTCTTATAAAATATgcaccgtattttt
gacgacggattgaatcaaACGATtgctttgttttcgagtgatatcttttt
cgaaatttaggtgtaaattttagtttcaatccgtcaTTTGTGTTGAACCA
GGCGGACTGcgctaggccgcgcaactttggtaggatttggtaggcttcaa
atcctagcaaggagattcgattctagcccatcgggcttatacttcattgt
tcTCGATGCTTCTTagttttctataagaaactttttgtaaatttgCAAGC
ACTCGGAagatttgatttcaaaaagaattatctttgctttgaaaatttgc
acactgAATGGATTAAATCAATGAAAGAGTTCGATAAGAGTATCTTCACC
TCTACCGTGACCACTTTGCCTCGGCTCGCATGGTTGTCATACAAACGCAG
GATTGGAAGTATCATTTTTCgccagaattttgaaaaatgtaatacacaaa
aaaacaaagaatggctagattcaatccgtcatccgAAATACGACACAAAT
CTTAAGGGTTCTTTCTTGCTATTGGCAAAGGTTGAAAATTCACCTCTAGC
AGCCTCGACTCAAATTTAACCCAATGCTTTGACACTGTTACTTTAGACTC
ATCATTCATAATACATCTAATCTCCGTctgaaatttctttgaaaacttca
GCATCTACATTTTCTTCACAAATCATACACAAATTCTCTTTATACTTCTA
GGGGTGTTGGATTATTCTTGGGGATCGAGTTGGTGAAGAGCCGCCAAACT
AAAGAACCAGCAACATCACAAGCCAAAAGAATAAGTTACTTGTAAGTAAT
TCTACACGTATTGTAACCATTGATTTCATAGCCATGAAGGGCTCTTGCat
aggaaatgaagccacttaggTTCCCACGTGGGTTTTTCGCAAATGCCAGC
TTGAAAGTAATCGCTAGATCCATCGGAAGATCCATCGCTAGATCCATCGG
AAACAGAGATTTAATCTGTCATTTTAAATGCGGCGCAAATCTAAAAGcta
cactttttcttgcttgagcaAGGTTGacgattcctctctagccccttcgg
ggctttcAACTCAACTGTATTCTACATTCCAGACTGGAGCATATTTATAC
TACAACTCAGGGTGCAAGGTTCATAGCATTAATGTTCAGTGGCATACAAA
AGGATTTACATTCATTTGCCAAATGTTTTGAGATTGGTTAAGCGATGAAG
GTTTTCGCAGGGACAAGTTTTGTCATCCTCTACTCTAAAGATATTTTGGT
CAGTTTTACTCTGACTAAGACCTCTGACCACCAAGGATTTAATAGGTTTG
GGACATTCCCGTACTTCATCTGGCCTAATAGTGTTTTAAAGTAACTGCAA
ATAAAATGCATGctatttaagattttgaaatgtaagtttaacttatttat
ttatccAGATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTCCAGG
AAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGACGACA
TGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGAACGG
GAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCTTGAG
AATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACTTTTT
GTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATATTca
gaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTCATTG
AAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttctttt
attacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTCTGTT
GTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTTTAAA
CAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGTAATC
CAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaatTATT
ACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCGGTAG
AAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCTAAAC
GTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATCTGTA
TTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataaaaaa
agtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGTACTT
TTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCATAGA
AGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGGTCTT
GGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatatttta
aaattaatatataaaatgctttaaaaatcaatttgaataattttaacaga
tttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTCGATT
ATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACATAAC
TAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgagcaga
ttctgatactccgCCCATTGCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003346	XLOC_003346	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000061	supercontig	sc0000061:787891..794613 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.57835e-08	0	0	0	0	0	0	0	0	0	0	0.0417914	0	0.039161	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00005861 vs. Swiss-Prot (Human)
Match: AT2L1 (Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=ETNPPL PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.624e-70
Identity = 107/199 (53.77%), Postives = 149/199 (74.87%), Query Frame = 2

Query:   11 GGICVADEVQTGFARAGKHGFWAFERQG--VVPDIISIGKPMGNGHPVACVVTTEAVAQALEDTKICYFNTFGGNPVSMAIASACMEVIRDEKLQENAETVGEYTMAKLRELKEKHEIIGDVRGVGLFLGIELVKSRQTKEPATSQAKRISYLLRQRGVLISGDGPGRNVLKVKPPLCVTKDDMDMFVEQLDKVLTEFE 601
            GG+ +ADEVQ GF R GKH FW+F+  G   VPDI+++GKPMGNGHPVACVVTT+ +A+A   + + YFNT+GGNPVS A+  A +++I +E LQ NA+ VG Y    L++ K KH +IGD+RG+GLF+GI+LVK    + PAT++A+ I Y ++++ VL+S DGP RNVLK+KPP+C T++D    V+QLD++LT  E
Sbjct:  240 GGVFIADEVQVGFGRVGKH-FWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLE 437

The following BLAST results are available for this feature:

BLAST of TCONS_00005861 vs. Swiss-Prot (Human)

BLAST of TCONS_00005861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AT2L1	4.624e-70	53.77	Ethanolamine-phosphate phospho-lyase OS=Homo sapie...	[more]

You are here

TCONS_00005861 (transcript) - C. hemisphaerica