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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=transcript|length=2722bp
AAAATCTCTAGTTCTTTTTTTTGATCTGATAAtatcacaaaacaaaaaat
gataagAGATGATAAAAAGCGGACGCAAGGTATTTATATGAGATTGTCAA
GCTGATAAAGTAGCGAAGAGAGCGTATTAAACTAAAGGATAAGTATTGCT
AATAAAATAGCAGTTCTCGGAGACtgtttcaacaaaaacatttcaaatac
aAATTGATAATGAACCAATCGTACTGCATCGACTGTGGATTTTATAATCA
AGGAGCGTCATGGGCCCAGAGCACCACCTGCGACCGCTGCAATATACCGA
GTATAAATTGTTACCGACGAAGGATCGAAATCTGGTCTTTGAACACAGAA
AGGCGAACTTTGATTTGTTCGTTTGATATTCATCCGTCTAGCTACATCGA
AGATGTCAAACAAAGAGTGTCAAAAAAAACCGGAATCTCTTTTAAAGATT
ATAGATTGTATCGTTTTCGTGAAGACCGTCCCGCTGAGCGAGAAAGTCAA
TTAATGGAATGGCACCCGTTGGATGATTATGAGACAATAGATTACCATTA
CAGCAATACAGTGAATTATGGTTTGAAAGTAAACAAGTATATGATGGTTG
AAAATAAAGCCAAAATTTCAATCATGTCTAATACCTTACCTTACCGGGTC
GAGCGAGCTCGGCATAAGATGTCTAATAAAAACTCACAAAAGATACGTGA
TAGGTACAATATAAACTGTATATCAACATTTCGATTAAATTTCTTGACAA
AAACAGTGGAGTTGAAGTTCAAAAACTTTCGGTTAATAAGAGATGTGAAA
ATTCATATTCAAAAGGAATTTAACATCAGAGTTGGTGACcaagttttgat
ttataaagGTAAAAAATTGATGGAGAATCAATTGACAAGAGATGTGTTtc
ttgaaaatcaaataaattcaTTAAGAGACGTATCTATTAGCTTGGTGATT
GAAAAAAAGCCATTCATGCTCAAAATATCACCTCAAATACGTTCTCAGTC
ATGGTTTAGCATTTCTATCAATGATTCTGACAACATTGAAGAGGTGAAGC
AGCAAATACAAGCAGAAACAGAAATTCCTATCCAAAACATACATCTCATT
GACCAAAAGATGCAAGACATTTTGTGTGATACAAAAAAAGTCGAAGAATA
TAAGTTTCTGGATCAATCAGTGATAACTTTGCAACAAAAACTATCCATTA
GACTTCACTTTGCGAAAGATAATCGAGTCGAGGAGAGAGTTGAAATTTTA
CCAGAGTATGAAAAAAGAACCGTCTTAGACCTCTTGGAAGAAATCCGCGA
ATCTTTCTTGCCGAAGGAAATGAATGTTGAGGAAATTAGATATCATCGTT
ATGGCACCCTGATTACAAGAATCTatgaaatagactttagaatcaagaaa
attaaaaaatgctcaATAATGTAGCtcaaaatgtatataatatctGATCC
AAACTTTTAAAACGATGCCATTAATCTTGAATAAGGTTAACTCCGTCGTT
TATgcaattatctcaaaataagaaaaatgcaGTTACTTCCTTTTTTCAGA
TCACGGCAGTAATAGAGCATAAAATTCTGAGcgaaaaaatgtattacaac
aactctctgactaaaacacacaaagaaatacagccgctttaagaccaact
aactgtcagctctactgtgatttattaacgtcaaatcttgtcttaACCGA
AAAAAATCGACGTTAACGGCATAAAGTCCTCTTtttcttaaccctatttt
tacaAGGCTTTTTCGAATTTTGTAACAGGAAGCATACAATTCAAGCGTCT
GATAAAAACTTACTTTAAATCCAAACGTCCACACATAAGTACCAAGCtga
ttattttagttttttgcaagtTCTCATTGTTTTATTCTTATTAAGGGCTT
taaccatagtgaatttttaatacttgccatgtacaaaatataaatttctg
ccTGATGGATGTAGCTAACNATCGCAACGAGAAAatctgatgaagaagaa
aatgaagacttttccAAAGAAGAGTATTGCAACTTCAGaacttattttcg
gcgaagaaaaaaacattttgaaaagactttCGAGTTAAATGGTGTATCTA
TTACCAAACCAAGCCATTCTGCACAAGAGGTGCTTATattatctattttt
cttataatcaCAAAGTTTATAAGAAACCTACAATCAAGATCATactattt
gagaaaaaaggataattcccaggaagttttgaaaccacaatcgatttgta
ggtgctctaaagtaggttcgaagaattgagttttaactctgagttttaac
gctagacttatgACTTAGCTTAGggtctgaggatccaaaagttcaaaaat
agtccaataaggctcagaatatagccttaAATTGAAGTCTGCCAACcgct
cccaaattgaaatattcaattaaattaaagagatcaactttctcgccgga
actttaaatcttgaaaaacgttaaaataaccggaattctcaatatatttc
tggAGCTTATTTATTGtttcttataagcaccaacTTTATAGGAAACTTAT
CAATAGCTTGTTAAGGGGAATTTTGCCGATTGGAAACGAAATGGCTAGGA
AAAATGCCTTAATTTTTACGTCAAAAAGTCGAAATGTTTAAGAAATGTAG
TCAGGTGAAGGCTTCATGAAGTTGAATAAAGACGTAATGTGCACTTCAAG
TGTAAAAAGTGAGCAATACGAA Run BLAST on NCBI protein sequence of TCONS_00059993-protein >TCONS_00059993-protein ID=TCONS_00059993-protein|Name=TCONS_00059993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MNQSYCIDCGFYNQGASWAQSTTCDRCNIPSINCYRRRIEIWSLNTERRT
LICSFDIHPSSYIEDVKQRVSKKTGISFKDYRLYRFREDRPAERESQLME
WHPLDDYETIDYHYSNTVNYGLKVNKYMMVENKAKISIMSNTLPYRVERA
RHKMSNKNSQKIRDRYNINCISTFRLNFLTKTVELKFKNFRLIRDVKIHI
QKEFNIRVGDQVLIYKGKKLMENQLTRDVFLENQINSLRDVSISLVIEKK
PFMLKISPQIRSQSWFSISINDSDNIEEVKQQIQAETEIPIQNIHLIDQK
MQDILCDTKKVEEYKFLDQSVITLQQKLSIRLHFAKDNRVEERVEILPEY
EKRTVLDLLEEIRESFLPKEMNVEEIRYHRYGTLITRIYEIDFRIKKIKK
CSIM Run BLAST on NCBI transcript from alignment at scaffold_331:1257189..1259910 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at scaffold_331:1257189..1259910 (Clytia hemisphaerica)
TTCGTATTGCTCACTTTTTACACTTGAAGTGCACATTACGTCTTTATTCA
ACTTCATGAAGCCTTCACCTGACTACATTTCTTAAACATTTCGACTTTTT
GACGTAAAAATTAAGGCATTTTTCCTAGCCATTTCGTTTCCAATCGGCAA
AATTCCCCTTAACAAGCTATTGATAAGTTTCCTATAAAgttggtgcttat
aagaaaCAATAAATAAGCTccagaaatatattgagaattccggttatttt
aacgtttttcaagatttaaagttccggcgagaaagttgatctctttaatt
taattgaatatttcaatttgggagcgGTTGGCAGACTTCAATTtaaggct
atattctgagccttattggactatttttgaacttttggatcctcagaccC
TAAGCTAAGTcataagtctagcgttaaaactcagagttaaaactcaattc
ttcgaacctactttagagcacctacaaatcgattgtggtttcaaaacttc
ctgggaattatccttttttctcaaatagtATGATCTTGATTGTAGGTTTC
TTATAAACTTTGtgattataagaaaaatagataatATAAGCACCTCTTGT
GCAGAATGGCTTGGTTTGGTAATAGATACACCATTTAACTCGaaagtctt
ttcaaaatgtttttttcttcgccgaaaataagttCTGAAGTTGCAATACT
CTTCTTTggaaaagtcttcattttcttcttcatcagatTTTCTCGTTGCG
ATNGTTAGCTACATCCATCAggcagaaatttatattttgtacatggcaag
tattaaaaattcactatggttaAAGCCCTTAATAAGAATAAAACAATGAG
AacttgcaaaaaactaaaataatcaGCTTGGTACTTATGTGTGGACGTTT
GGATTTAAAGTAAGTTTTTATCAGACGCTTGAATTGTATGCTTCCTGTTA
CAAAATTCGAAAAAGCCTtgtaaaaatagggttaagaaaAAGAGGACTTT
ATGCCGTTAACGTCGATTTTTTTCGGTtaagacaagatttgacgttaata
aatcacagtagagctgacagttagttggtcttaaagcggctgtatttctt
tgtgtgttttagtcagagagttgttgtaatacattttttcgCTCAGAATT
TTATGCTCTATTACTGCCGTGATCTGAAAAAAGGAAGTAACtgcattttt
cttattttgagataattgcATAAACGACGGAGTTAACCTTATTCAAGATT
AATGGCATCGTTTTAAAAGTTTGGATCagatattatatacattttgaGCT
ACATTATtgagcattttttaattttcttgattctaaagtctatttcatAG
ATTCTTGTAATCAGGGTGCCATAACGATGATATCTAATTTCCTCAACATT
CATTTCCTTCGGCAAGAAAGATTCGCGGATTTCTTCCAAGAGGTCTAAGA
CGGTTCTTTTTTCATACTCTGGTAAAATTTCAACTCTCTCCTCGACTCGA
TTATCTTTCGCAAAGTGAAGTCTAATGGATAGTTTTTGTTGCAAAGTTAT
CACTGATTGATCCAGAAACTTATATTCTTCGACTTTTTTTGTATCACACA
AAATGTCTTGCATCTTTTGGTCAATGAGATGTATGTTTTGGATAGGAATT
TCTGTTTCTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAATC
ATTGATAGAAATGCTAAACCATGACTGAGAACGTATTTGAGGTGATATTT
TGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTCTT
AAtgaatttatttgattttcaagaAACACATCTCTTGTCAATTGATTCTC
CATCAATTTTTTACctttataaatcaaaacttgGTCACCAACTCTGATGT
TAAATTCCTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGTTT
TTGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTTGA
TATACAGTTTATATTGTACCTATCACGTATCTTTTGTGAGTTTTTATTAG
ACATCTTATGCCGAGCTCGCTCGACCCGGTAAGGTAAGGTATTAGACATG
ATTGAAATTTTGGCTTTATTTTCAACCATCATATACTTGTTTACTTTCAA
ACCATAATTCACTGTATTGCTGTAATGGTAATCTATTGTCTCATAATCAT
CCAACGGGTGCCATTCCATTAATTGACTTTCTCGCTCAGCGGGACGGTCT
TCACGAAAACGATACAATCTATAATCTTTAAAAGAGATTCCGGTTTTTTT
TGACACTCTTTGTTTGACATCTTCGATGTAGCTAGACGGATGAATATCAA
ACGAACAAATCAAAGTTCGCCTTTCTGTGTTCAAAGACCAGATTTCGATC
CTTCGTCGGTAACAATTTATACTCGGTATATTGCAGCGGTCGCAGGTGGT
GCTCTGGGCCCATGACGCTCCTTGATTATAAAATCCACAGTCGATGCAGT
ACGATTGGTTCATTATCAATTtgtatttgaaatgtttttgttgaaacaGT
CTCCGAGAACTGCTATTTTATTAGCAATACTTATCCTTTAGTTTAATACG
CTCTCTTCGCTACTTTATCAGCTTGACAATCTCATATAAATACCTTGCGT
CCGCTTTTTATCATCTcttatcattttttgttttgtgataTTATCAGATC
AAAAAAAAGAACTAGAGATTTT Coding sequence (CDS) from alignment at scaffold_331:1257189..1259910 >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_331:1257189..1259910 (Clytia hemisphaerica)
CTACATTATtgagcattttttaattttcttgattctaaagtctatttcat
AGATTCTTGTAATCAGGGTGCCATAACGATGATATCTAATTTCCTCAACA
TTCATTTCCTTCGGCAAGAAAGATTCGCGGATTTCTTCCAAGAGGTCTAA
GACGGTTCTTTTTTCATACTCTGGTAAAATTTCAACTCTCTCCTCGACTC
GATTATCTTTCGCAAAGTGAAGTCTAATGGATAGTTTTTGTTGCAAAGTT
ATCACTGATTGATCCAGAAACTTATATTCTTCGACTTTTTTTGTATCACA
CAAAATGTCTTGCATCTTTTGGTCAATGAGATGTATGTTTTGGATAGGAA
TTTCTGTTTCTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAA
TCATTGATAGAAATGCTAAACCATGACTGAGAACGTATTTGAGGTGATAT
TTTGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTC
TTAAtgaatttatttgattttcaagaAACACATCTCTTGTCAATTGATTC
TCCATCAATTTTTTACctttataaatcaaaacttgGTCACCAACTCTGAT
GTTAAATTCCTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGT
TTTTGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTT
GATATACAGTTTATATTGTACCTATCACGTATCTTTTGTGAGTTTTTATT
AGACATCTTATGCCGAGCTCGCTCGACCCGGTAAGGTAAGGTATTAGACA
TGATTGAAATTTTGGCTTTATTTTCAACCATCATATACTTGTTTACTTTC
AAACCATAATTCACTGTATTGCTGTAATGGTAATCTATTGTCTCATAATC
ATCCAACGGGTGCCATTCCATTAATTGACTTTCTCGCTCAGCGGGACGGT
CTTCACGAAAACGATACAATCTATAATCTTTAAAAGAGATTCCGGTTTTT
TTTGACACTCTTTGTTTGACATCTTCGATGTAGCTAGACGGATGAATATC
AAACGAACAAATCAAAGTTCGCCTTTCTGTGTTCAAAGACCAGATTTCGA
TCCTTCGTCGGTAACAATTTATACTCGGTATATTGCAGCGGTCGCAGGTG
GTGCTCTGGGCCCATGACGCTCCTTGATTATAAAATCCACAGTCGATGCA
GTACGATTGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059993-exon-scaffold_331-1491911889:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1491911889:1257189..1259910 | Clytia hemisphaerica | exon |
| TCONS_00059993-exon-scaffold_331-1510915933:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1510915933:1257189..1259910 | Clytia hemisphaerica | exon |
| TCONS_00059993-exon-scaffold_331-1575043694:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1575043694:1257189..1259910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1257189..1259910 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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