TCONS_00059981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059981
Unique NameTCONS_00059981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059981 ID=TCONS_00059981|Name=TCONS_00059981|organism=Clytia hemisphaerica|type=transcript|length=471bp
caaaaacgtcaaaaatggataaaattttcacaagattcagtctctctaag
ggttgattTTCGAGCTTTGACTCGGACATACCTGCTATCTCACAAACCTA
GCCCAATCCCCGGGAATTTGATAAAATACTTTTTGATTAGTCATTGATCG
CtgggttttcactttcaggGAAGATTTTAGCTAGTCTAGTTGCTTTCAGC
ACCTGAAGAagctgagaaaacgaaagtaatcAAGATATATAAAATGGGAG
ATTCTCCTGCCCGTCTCACTCAAGGGCTTTAAAAGACAAACGTTGTTCCT
TTTAcattaattaattattttttgctagattttcatcaaattataTTATG
CTCTGTAATTATCATATGATAGGAAACCATAGAAAAGTCATTTCGACTTC
CGTTTCAAACATAACTCCATAATTACTAAAGTATATTTTTAGCCCTCGAC
TTATCTGTCCGTTTGTTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_331:1090244..1090714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059981 ID=TCONS_00059981|Name=TCONS_00059981|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at scaffold_331:1090244..1090714 (Clytia hemisphaerica)
ACCAAACAAACGGACAGATAAGTCGAGGGCTAAAAATATACTTTAGTAAT
TATGGAGTTATGTTTGAAACGGAAGTCGAAATGACTTTTCTATGGTTTCC
TATCATATGATAATTACAGAGCATAAtataatttgatgaaaatctagcaa
aaaataattaattaatgTAAAAGGAACAACGTTTGTCTTTTAAAGCCCTT
GAGTGAGACGGGCAGGAGAATCTCCCATTTTATATATCTTgattactttc
gttttctcagctTCTTCAGGTGCTGAAAGCAACTAGACTAGCTAAAATCT
TCcctgaaagtgaaaacccaGCGATCAATGACTAATCAAAAAGTATTTTA
TCAAATTCCCGGGGATTGGGCTAGGTTTGTGAGATAGCAGGTATGTCCGA
GTCAAAGCTCGAAaatcaacccttagagagactgaatcttgtgaaaattt
tatccatttttgacgtttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037737XLOC_037737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059981-exon-scaffold_331-1491911889:1090244..1090714TCONS_00059981-exon-scaffold_331-1491911889:1090244..1090714Clytia hemisphaericaexon
TCONS_00059981-exon-scaffold_331-1510915933:1090244..1090714TCONS_00059981-exon-scaffold_331-1510915933:1090244..1090714Clytia hemisphaericaexon
TCONS_00059981-exon-scaffold_331-1575043694:1090244..1090714TCONS_00059981-exon-scaffold_331-1575043694:1090244..1090714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1090244..1090714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.264095	0	0	0.18261	0	0	0.162983	0	0	0	0	1.35087	2.05757	4.15211	2.80554	0.609916	0.520954	0	0	0	0	0.31052	0.141154	0	0	0	0	0.300592	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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