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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059896 ID=TCONS_00059896|Name=TCONS_00059896|organism=Clytia hemisphaerica|type=transcript|length=1712bp
tttagcTATATAAATTACGAAAAGATAATGAAAAATGAACCCTACGCACA
GAGGGGTAAAAACTTTTGGTACCCAAGTGCCTGGACTAGTAACATAACCG
TATAAACCTCACAAAAACCACTGGAATTTATTATCACATACTATCAAAGA
CGTCTGATGAGATATTGTATACAAGCGGATTTTGGAAGCACATCGAATCA
TTCATTTcggagaagaaaaaaataaagaggaTTATACACCAACGATGCCA
ACCATTTGTGATTGTATCAATTCATTTATCAAAGAATGTGTCCAATTTGT
ACAAAAACATTTCCGtccaaaaacaaaagaagataGTAAAAGCACACAAA
GTCCTGCCAAGAAACGTGTCTGGTTTGCGCCCACGTTAACGGCGGAATTT
CATACTCGTGGGCGGGAGACACCCTCGTGTGTCATCACATGTAAAACTGA
GCATTCTCCGAACCCTAGATCCAGATGGAGCATTACCGAACGCAATGCAT
TTTGGGATATTATCCAAGATCATCTACGTAAGCTACTTGAAGAcattgac
gaaaattttgaaatcaatctCCATTCAATCTGTTGTGAAGATGATATTGA
CTTTACTGTCTTGGACCCAACTTCAATCCAAGATTATGAAATCTGTCGAG
TTCTGATTGGCTGTGAGCTTTGGAAAGGACATTATGTATGTGCAGTAAAA
ATGTATAGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAAGCA
AGGAAATGACACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGAC
TGAAAGACATATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTAT
CTCGAACAAGGGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCAC
ATTGGATATAGATGATCAAGAGAGATTTATgtattatcaattatttacaa
TAGACTTTCTGAAATCCACTCGTTATCTCTCTCTCAGTGctacttacacg
tttttttataataacaaactATAATCATATAACGTTATAATAGTATTGNC
TGTGAACTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTATAGGCT
GGTAACAACTTTCTTTGAGATTCTACTGAATCAGAACCAAGGAAAAGACA
CTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAGACATA
TTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAACAAGG
GTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGATATAG
ATGATCAAGAGAGATTTATgtattatcaattatttacaaTAGACTTTCTG
AAATCCACTCGTTATCTCTCTCTCAGTGctacttacacgtttttttataa
taacaaactATAATCATATAACGTTATAATAGTATTGTACTACTTTCCTC
AGTACAAGTCATGAGCCTATTGCTGaatttctcgtggcaggcgTGGCAAC
TGTGGTTGAGcgtttaaaattgatttcacaGCGATTGCGTACGGCTAcat
ttctcgtggcaagcgtggcaatCATTGTTGTATGGGCTTTGCAGACTATA
AAACACTCGATTTTTCTTacgaaaatggaaaaaaatcctcaaaaagtggt
gaaataagaatatgttaagaacatttttaggcttaaagctcaaaaagtta
agaacatccgaa Run BLAST on NCBI transcript from alignment at scaffold_331:560092..564447- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059896 ID=TCONS_00059896|Name=TCONS_00059896|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at scaffold_331:560092..564447- (Clytia hemisphaerica)
TTTAGCTATATAAATTACGAAAAGATAATGAAAAATGAACCCTACGCACA
GAGGGGTAAAAACTTTTGGTACCCAAGTGCCTGGACTAGTAACATAACCG
TATAAACCTCACAAAAACCACTGGAATTTATTATCACATACTATCAAAGA
CGTCTGATGAGATATTGTATACAAGCGGATTTTGGAAGCAGTAAAACCCC
AGTAAAACAGTTTGAAAAAGAAATTTAAGAAATTAAATTTGCACATTGCT
TGGTTAAGGTAAGAAATGCATTATTTGCTTGTTTTTTTTATATTTAGACG
CTTATTATATACCCCTTTAACACCCCTTAAGATTTTTCCAGCCAGTGAGG
GTAACGGACCCAAACTCGATTGGAATTTGGATGATCGTTTTCGAACCAGA
AAACTCAGCGGATACGGAAAAATAGCACACTATTTTGAAGTAAGGATTAG
CTTTATTCGATTATTCAGCAGGGATAAAAATTAGAGTATAATGGGGACGA
TGTTTAGGCAAATTTTTCCAGTGGGAAAGGGTGCCAATGGGTCTGTGTGA
AGGTGTGTTTTTATTGACTCTTTCAACTTTTACCCCTTGATTTGCTAACG
CTCTTATTGATGTTTTTGTATTCTACTGTGCAGACATTTTGCTTTGACAT
TCTGGTTTATAAAGCTGATCTAATATACTATAATGTATAAGAATTTTTTT
CTAATTACCGTGCTTTGGAGTGTGGGTCTTTAAAGCACGGTGATTAGATA
AAAAACGTTATATAATGCCCCGAATGCCGTGATTAATTATTCAGATCACC
TTTACTACCCTGTCATTATGACGTAATAAATTAGCTCCTATTTAAAATTT
CTCATTTGTTAAAAGTTTTACTGTCTGATTACCTGAATTTAGACTGTTGA
CATGACAAAGTTGTTTTTTATTCTAAAAAACAGCTGATTTATATCCTGTG
CCTAGTGTTTCTCCTTCTTTTCAACACGGTATATCATTGTATATATTACA
GCTTCAAACAGCGAGCTACTTGTGCTTTATTTCACCATACTCTGTGAAGG
AACTAGCTGGATGTTTTAAAGCATATCATATGGAAAATTATAATAGAAAG
TTTTGTTGATTTTTGGTGAAGCTAGCTCAATGAAAAGGGATTATATCTAA
CATCTTTTGTGTGAGAGTTAATTCCTTGAAAGATTTGTATCGAAATGGTT
TCAATCTAAGATTTTCGGTGCGGTGTCAAAGTCTTTCATAGTTAGAATGA
TTGTATTAAAAGGAATTTTCTAAATTTTGCATTAGATTAAGTAAGTACAC
GTTTTTTTATGAGAGCATCCAGAATTTTTAAAGTCTTCGGATGTTTTAAG
CCTTAAAATGTTCTTGACTTGTTCTTAACATTTTAGTCAGTGAAGCCTTA
TGTTCTTATATAGTTCGTTCTAATAAAAAAAAGTGCATGGTTATGTTTAA
TTTGATGGCGAAATTTACTTTATCTGTTATGTTGAGATCCGGGGGACACT
CGATTTCGATTTGGATTTCGACTCGGTATGTGCTGCGCAAAATCTTCTTT
TTAAAATTGTACCCTTATAGTACAGTTCAATATGGCTGAAAATATACCCT
TTCAGTGCATCTTTCATTTACCCAACCCTTATAACCCAGCACTATATTTT
TAGGCCAGATCATATGAGTGCCCCCCCCCCGGATTGAGATTAACATTATG
GAATTTTGAAACTTTTGCTTAGCTTTCTTAGAGACTCTAAAACATCCGGG
ACATACAGAAAGTCGCAATTAAGTGGAGGGCGCACGGGATATTGGCCTTT
TTTTAGATCGGTAAGTAAATCAGTATTAAGGGAAAAGTTTGATCGGTAAT
CGGTAATTGAGCAAAAATTTGATCGGTATGTCGGTATTACGAATCCCGTA
CGCGCCCCCAATTAAGGATCATAGGTAGAATATCTGCATTTTCGACGTTC
ATAATAATAATAACAATAATAATATTTTAAGTGGCTGGCCATAGAATAAT
GAATCAGCTTTTAGGCAGCTGAGCCATTGTCTCCCCCAGGGGACACTTGT
ATAACATAACAGAACAACATGGTCATGCCTTATCGTTAGGCATGAAATGT
ACGTTGTGTGTACGTTGTGTACCATATTAATCAGGGTAAAAGAAGATATA
AAACTGTAATTAAAATGTAATTGAACCAGATTGAACTATAATTAAACAAA
GATTAATTAGTATGGGGAAGTCAAATGAATATTTTCAGGGTTGCAACATT
TTCGAAAATAATGTAATTAGCGGGTTACGTATACTGTCGCAGAGTAACAA
TTTGATGGTATAGCTAGGATGGATACTATAAGCGTGTGGCTACATGTATG
GTTTTACTTCGGTTTGCCGAAGTGAACTACTTAGGGTGTGAGCAGAAACT
TTCCCGATTTTCGTGAATTTTAGTCTTTTTCGCGAAAATAAATGTCTTTG
AAATTCTTAAAAGGGCCATTCGCGAAAGTTTTAGACTAGTAAACCACATC
GATGTATTTCGCTGCAGATTAATCTATTTTTTTATATGTTCACTGAATAC
AATGTCTTTCCAATCCACTCTCCCGCGGCAATTTCTATTTTTTATAAGAA
CTCTTTATTATAAGCACCATTCCCGCGTTCCTAGGCTAGTCCTAGGCTAG
GCTAGTCCAAAACCATCTCAAGTAGATTTCTTTAGTTTGGAATAATATAA
TTTCTATACCCATTTGGGATTTCGATAGAAATTTTTATCCAAATTAAGGG
AAAAAAGTTCCAACGGGGCTGTGAGACAGAATTAATGAAATTGTTGAACT
ATCAGAAGAGCAATCTTTTTTTTTAATCTTTCAGCATCGAATCATTCATT
TCGGAGAAGAAAAAAATAAAGAGGATTATACACCAACGATGCCAACCATT
TGTGATTGTATCAATTCATTTATCAAAGAATGTGTCCAATTTGTACAAAA
ACATTTCCGTCCAAAAACAAAAGAAGATAGTAAAAGCACACAAAGTCCTG
CCAAGAAACGTGTCTGGTTTGCGCCCACGTTAACGGCGGAATTTCATACT
CGTGGGCGGGAGACACCCTCGTGTGTCATCACATGTAAAACTGAGCATTC
TCCGAACCCTAGATCCAGATGGAGCATTACCGAACGCAATGCATTTTGGG
ATATTATCCAAGATCATCTACGTAAGCTACTTGAAGACATTGACGAAAAT
TTTGAAATCAATCTCCATTCAATCTGTTGTGAAGATGATATTGACTTTAC
TGTCTTGGACCCAACTTCAATCCAAGATTATGAAATCTGTCGAGTTCTGA
TTGGCTGTGAGCTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTAT
AGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAAGCAAGGAAA
TGACACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAG
ACATATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAA
CAAGGGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGA
TATAGATGATCAAGAGAGATTTATGTATTATCAATTATTTACAATAGACT
TTCTGAAATCCACTCGTTATCTCTCTCTCAGTGCTACTTACACGTTTTTT
TATAATAACAAACTATAATCATATAACGTTATAATAGTATTGNCTGTGAA
CTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTATAGGCTGGTAAC
AACTTTCTTTGAGATTCTACTGAATCAGAACCAAGGAAAAGACACTGTAG
GGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAGACATATTCTTG
ACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAACAAGGGTCTAT
CCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGATATAGATGATC
AAGAGAGATTTATGTATTATCAATTATTTACAATAGACTTTCTGAAATCC
ACTCGTTATCTCTCTCTCAGTGCTACTTACACGTTTTTTTATAATAACAA
ACTATAATCATATAACGTTATAATAGTATTGTACTACTTTCCTCAGTACA
AGTCATGAGCCTATTGCTGAATTTCTCGTGGCAGGCGTGGCAACTGTGGT
TGAGCGTTTAAAATTGATTTCACAGCGATTGCGTACGGCTACATTTCTCG
TGGCAAGCGTGGCAATCATTGTTGTATGGGCTTTGCAGACTATAAAACAC
TCGATTTTTCTTACGAAAATGGAAAAAAATCCTCAAAAAGTGGTGAAATA
AGAATATGTTAAGAACATTTTTAGGCTTAAAGCTCAAAAAGTTAAGAACA
TCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059896-exon-scaffold_331-1575043694:564258..564447 | TCONS_00059896-exon-scaffold_331-1575043694:564258..564447 | Clytia hemisphaerica | exon |
| TCONS_00059896-exon-scaffold_331-1575043694:560092..561613 | TCONS_00059896-exon-scaffold_331-1575043694:560092..561613 | Clytia hemisphaerica | exon |
| TCONS_00059896-exon-scaffold_331-1510915933:564258..564447 | TCONS_00059896-exon-scaffold_331-1510915933:564258..564447 | Clytia hemisphaerica | exon |
| TCONS_00059896-exon-scaffold_331-1510915933:560092..561613 | TCONS_00059896-exon-scaffold_331-1510915933:560092..561613 | Clytia hemisphaerica | exon |
| TCONS_00059896-exon-scaffold_331-1491911889:564258..564447 | TCONS_00059896-exon-scaffold_331-1491911889:564258..564447 | Clytia hemisphaerica | exon |
| TCONS_00059896-exon-scaffold_331-1491911889:560092..561613 | TCONS_00059896-exon-scaffold_331-1491911889:560092..561613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:560092..564447 - |
Blast
The following BLAST results are available for this feature:
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