TCONS_00059895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059895
Unique NameTCONS_00059895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059895 ID=TCONS_00059895|Name=TCONS_00059895|organism=Clytia hemisphaerica|type=transcript|length=1746bp
ATGAACCCTACGCACAGAGGGGTAAAAACTTTTGGTACCCAAGTGCCTGG
ACTAGTAACATAACCGTATAAACCTCACAAAAACCACTGGAATTTATTAT
CACATACTATCAAAGACGTCTGATGAGATATTGTATACAAGCGGATTTTG
GAAGCAGTAAAACCCCAGtaaaacagtttgaaaaagaaatttaagaaatt
aaATTTGCACATTGCTTGGTTAAGCATCGAATCATTCATTTcggagaaga
aaaaaataaagaggaTTATACACCAACGATGCCAACCATTTGTGATTGTA
TCAATTCATTTATCAAAGAATGTGTCCAATTTGTACAAAAACATTTCCGt
ccaaaaacaaaagaagataGTAAAAGCACACAAAGTCCTGCCAAGAAACG
TGTCTGGTTTGCGCCCACGTTAACGGCGGAATTTCATACTCGTGGGCGGG
AGACACCCTCGTGTGTCATCACATGTAAAACTGAGCATTCTCCGAACCCT
AGATCCAGATGGAGCATTACCGAACGCAATGCATTTTGGGATATTATCCA
AGATCATCTACGTAAGCTACTTGAAGAcattgacgaaaattttgaaatca
atctCCATTCAATCTGTTGTGAAGATGATATTGACTTTACTGTCTTGGAC
CCAACTTCAATCCAAGATTATGAAATCTGTCGAGTTCTGATTGGCTGTGA
GCTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTATAGGCTGGTAA
CAACTTTCTTTGAGATTCTACTGAATCAGAAGCAAGGAAATGACACTGTA
GGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAGACATATTCTT
GACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAACAAGGGTCTA
TCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGATATAGATGAT
CAAGAGAGATTTATgtattatcaattatttacaaTAGACTTTCTGAAATC
CACTCGTTATCTCTCTCTCAGTGctacttacacgtttttttataataaca
aactATAATCATATAACGTTATAATAGTATTGNCTGTGAACTTTGGAAAG
GACATTATGTATGTGCAGTAAAAATGTATAGGCTGGTAACAACTTTCTTT
GAGATTCTACTGAATCAGAACCAAGGAAAAGACACTGTAGGGGATAATGA
CATTGAACTTGGCTTGTACGGACTGAAAGACATATTCTTGACGACTTGCT
AGAAGAATTGTTTACGTCTTTATCTCGAACAAGGGTCTATCCTACCATAA
AGCTTACTGTAGATTGATTTCACATTGGATATAGATGATCAAGAGAGATT
TATgtattatcaattatttacaaTAGACTTTCTGAAATCCACTCGTTATC
TCTCTCTCAGTGctacttacacgtttttttataataacaaactATAATCA
TATAACGTTATAATAGTATTGTACTACTTTCCTCAGTACAAGTCATGAGC
CTATTGCTGaatttctcgtggcaggcgTGGCAACTGTGGTTGAGcgttta
aaattgatttcacaGCGATTGCGTACGGCTAcatttctcgtggcaagcgt
ggcaatCATTGTTGTATGGGCTTTGCAGACTATAAAACACTCGATTTTTC
TTacgaaaatggaaaaaaatcctcaaaaagtggtgaaataagaatatgtt
aagaacatttttaggcttaaagctcaaaaagttaagaacatccgaa
Run BLAST on NCBI

protein sequence of TCONS_00059895-protein

>TCONS_00059895-protein ID=TCONS_00059895-protein|Name=TCONS_00059895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MPTICDCINSFIKECVQFVQKHFRPKTKEDSKSTQSPAKKRVWFAPTLTA
EFHTRGRETPSCVITCKTEHSPNPRSRWSITERNAFWDIIQDHLRKLLED
IDENFEINLHSICCEDDIDFTVLDPTSIQDYEICRVLIGCELWKGHYVCA
VKMYRLVTTFFEILLNQKQGNDTVGDNDIELGLYGLKDIFLTTC
Run BLAST on NCBI

transcript from alignment at scaffold_331:560092..564413-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059895 ID=TCONS_00059895|Name=TCONS_00059895|organism=Clytia hemisphaerica|type=transcript|length=4322bp|location=Sequence derived from alignment at scaffold_331:560092..564413- (Clytia hemisphaerica)
ATGAACCCTACGCACAGAGGGGTAAAAACTTTTGGTACCCAAGTGCCTGG
ACTAGTAACATAACCGTATAAACCTCACAAAAACCACTGGAATTTATTAT
CACATACTATCAAAGACGTCTGATGAGATATTGTATACAAGCGGATTTTG
GAAGCAGTAAAACCCCAGTAAAACAGTTTGAAAAAGAAATTTAAGAAATT
AAATTTGCACATTGCTTGGTTAAGGTAAGAAATGCATTATTTGCTTGTTT
TTTTTATATTTAGACGCTTATTATATACCCCTTTAACACCCCTTAAGATT
TTTCCAGCCAGTGAGGGTAACGGACCCAAACTCGATTGGAATTTGGATGA
TCGTTTTCGAACCAGAAAACTCAGCGGATACGGAAAAATAGCACACTATT
TTGAAGTAAGGATTAGCTTTATTCGATTATTCAGCAGGGATAAAAATTAG
AGTATAATGGGGACGATGTTTAGGCAAATTTTTCCAGTGGGAAAGGGTGC
CAATGGGTCTGTGTGAAGGTGTGTTTTTATTGACTCTTTCAACTTTTACC
CCTTGATTTGCTAACGCTCTTATTGATGTTTTTGTATTCTACTGTGCAGA
CATTTTGCTTTGACATTCTGGTTTATAAAGCTGATCTAATATACTATAAT
GTATAAGAATTTTTTTCTAATTACCGTGCTTTGGAGTGTGGGTCTTTAAA
GCACGGTGATTAGATAAAAAACGTTATATAATGCCCCGAATGCCGTGATT
AATTATTCAGATCACCTTTACTACCCTGTCATTATGACGTAATAAATTAG
CTCCTATTTAAAATTTCTCATTTGTTAAAAGTTTTACTGTCTGATTACCT
GAATTTAGACTGTTGACATGACAAAGTTGTTTTTTATTCTAAAAAACAGC
TGATTTATATCCTGTGCCTAGTGTTTCTCCTTCTTTTCAACACGGTATAT
CATTGTATATATTACAGCTTCAAACAGCGAGCTACTTGTGCTTTATTTCA
CCATACTCTGTGAAGGAACTAGCTGGATGTTTTAAAGCATATCATATGGA
AAATTATAATAGAAAGTTTTGTTGATTTTTGGTGAAGCTAGCTCAATGAA
AAGGGATTATATCTAACATCTTTTGTGTGAGAGTTAATTCCTTGAAAGAT
TTGTATCGAAATGGTTTCAATCTAAGATTTTCGGTGCGGTGTCAAAGTCT
TTCATAGTTAGAATGATTGTATTAAAAGGAATTTTCTAAATTTTGCATTA
GATTAAGTAAGTACACGTTTTTTTATGAGAGCATCCAGAATTTTTAAAGT
CTTCGGATGTTTTAAGCCTTAAAATGTTCTTGACTTGTTCTTAACATTTT
AGTCAGTGAAGCCTTATGTTCTTATATAGTTCGTTCTAATAAAAAAAAGT
GCATGGTTATGTTTAATTTGATGGCGAAATTTACTTTATCTGTTATGTTG
AGATCCGGGGGACACTCGATTTCGATTTGGATTTCGACTCGGTATGTGCT
GCGCAAAATCTTCTTTTTAAAATTGTACCCTTATAGTACAGTTCAATATG
GCTGAAAATATACCCTTTCAGTGCATCTTTCATTTACCCAACCCTTATAA
CCCAGCACTATATTTTTAGGCCAGATCATATGAGTGCCCCCCCCCCGGAT
TGAGATTAACATTATGGAATTTTGAAACTTTTGCTTAGCTTTCTTAGAGA
CTCTAAAACATCCGGGACATACAGAAAGTCGCAATTAAGTGGAGGGCGCA
CGGGATATTGGCCTTTTTTTAGATCGGTAAGTAAATCAGTATTAAGGGAA
AAGTTTGATCGGTAATCGGTAATTGAGCAAAAATTTGATCGGTATGTCGG
TATTACGAATCCCGTACGCGCCCCCAATTAAGGATCATAGGTAGAATATC
TGCATTTTCGACGTTCATAATAATAATAACAATAATAATATTTTAAGTGG
CTGGCCATAGAATAATGAATCAGCTTTTAGGCAGCTGAGCCATTGTCTCC
CCCAGGGGACACTTGTATAACATAACAGAACAACATGGTCATGCCTTATC
GTTAGGCATGAAATGTACGTTGTGTGTACGTTGTGTACCATATTAATCAG
GGTAAAAGAAGATATAAAACTGTAATTAAAATGTAATTGAACCAGATTGA
ACTATAATTAAACAAAGATTAATTAGTATGGGGAAGTCAAATGAATATTT
TCAGGGTTGCAACATTTTCGAAAATAATGTAATTAGCGGGTTACGTATAC
TGTCGCAGAGTAACAATTTGATGGTATAGCTAGGATGGATACTATAAGCG
TGTGGCTACATGTATGGTTTTACTTCGGTTTGCCGAAGTGAACTACTTAG
GGTGTGAGCAGAAACTTTCCCGATTTTCGTGAATTTTAGTCTTTTTCGCG
AAAATAAATGTCTTTGAAATTCTTAAAAGGGCCATTCGCGAAAGTTTTAG
ACTAGTAAACCACATCGATGTATTTCGCTGCAGATTAATCTATTTTTTTA
TATGTTCACTGAATACAATGTCTTTCCAATCCACTCTCCCGCGGCAATTT
CTATTTTTTATAAGAACTCTTTATTATAAGCACCATTCCCGCGTTCCTAG
GCTAGTCCTAGGCTAGGCTAGTCCAAAACCATCTCAAGTAGATTTCTTTA
GTTTGGAATAATATAATTTCTATACCCATTTGGGATTTCGATAGAAATTT
TTATCCAAATTAAGGGAAAAAAGTTCCAACGGGGCTGTGAGACAGAATTA
ATGAAATTGTTGAACTATCAGAAGAGCAATCTTTTTTTTTAATCTTTCAG
CATCGAATCATTCATTTCGGAGAAGAAAAAAATAAAGAGGATTATACACC
AACGATGCCAACCATTTGTGATTGTATCAATTCATTTATCAAAGAATGTG
TCCAATTTGTACAAAAACATTTCCGTCCAAAAACAAAAGAAGATAGTAAA
AGCACACAAAGTCCTGCCAAGAAACGTGTCTGGTTTGCGCCCACGTTAAC
GGCGGAATTTCATACTCGTGGGCGGGAGACACCCTCGTGTGTCATCACAT
GTAAAACTGAGCATTCTCCGAACCCTAGATCCAGATGGAGCATTACCGAA
CGCAATGCATTTTGGGATATTATCCAAGATCATCTACGTAAGCTACTTGA
AGACATTGACGAAAATTTTGAAATCAATCTCCATTCAATCTGTTGTGAAG
ATGATATTGACTTTACTGTCTTGGACCCAACTTCAATCCAAGATTATGAA
ATCTGTCGAGTTCTGATTGGCTGTGAGCTTTGGAAAGGACATTATGTATG
TGCAGTAAAAATGTATAGGCTGGTAACAACTTTCTTTGAGATTCTACTGA
ATCAGAAGCAAGGAAATGACACTGTAGGGGATAATGACATTGAACTTGGC
TTGTACGGACTGAAAGACATATTCTTGACGACTTGCTAGAAGAATTGTTT
ACGTCTTTATCTCGAACAAGGGTCTATCCTACCATAAAGCTTACTGTAGA
TTGATTTCACATTGGATATAGATGATCAAGAGAGATTTATGTATTATCAA
TTATTTACAATAGACTTTCTGAAATCCACTCGTTATCTCTCTCTCAGTGC
TACTTACACGTTTTTTTATAATAACAAACTATAATCATATAACGTTATAA
TAGTATTGNCTGTGAACTTTGGAAAGGACATTATGTATGTGCAGTAAAAA
TGTATAGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAACCAA
GGAAAAGACACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGACT
GAAAGACATATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTATC
TCGAACAAGGGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCACA
TTGGATATAGATGATCAAGAGAGATTTATGTATTATCAATTATTTACAAT
AGACTTTCTGAAATCCACTCGTTATCTCTCTCTCAGTGCTACTTACACGT
TTTTTTATAATAACAAACTATAATCATATAACGTTATAATAGTATTGTAC
TACTTTCCTCAGTACAAGTCATGAGCCTATTGCTGAATTTCTCGTGGCAG
GCGTGGCAACTGTGGTTGAGCGTTTAAAATTGATTTCACAGCGATTGCGT
ACGGCTACATTTCTCGTGGCAAGCGTGGCAATCATTGTTGTATGGGCTTT
GCAGACTATAAAACACTCGATTTTTCTTACGAAAATGGAAAAAAATCCTC
AAAAAGTGGTGAAATAAGAATATGTTAAGAACATTTTTAGGCTTAAAGCT
CAAAAAGTTAAGAACATCCGAA

Coding sequence (CDS) from alignment at scaffold_331:560092..564413-

>TCONS_00059895 ID=TCONS_00059895|Name=TCONS_00059895|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_331:560092..564413- (Clytia hemisphaerica)
ATGCCAACCATTTGTGATTGTATCAATTCATTTATCAAAGAATGTGTCCA
ATTTGTACAAAAACATTTCCGTCCAAAAACAAAAGAAGATAGTAAAAGCA
CACAAAGTCCTGCCAAGAAACGTGTCTGGTTTGCGCCCACGTTAACGGCG
GAATTTCATACTCGTGGGCGGGAGACACCCTCGTGTGTCATCACATGTAA
AACTGAGCATTCTCCGAACCCTAGATCCAGATGGAGCATTACCGAACGCA
ATGCATTTTGGGATATTATCCAAGATCATCTACGTAAGCTACTTGAAGAC
ATTGACGAAAATTTTGAAATCAATCTCCATTCAATCTGTTGTGAAGATGA
TATTGACTTTACTGTCTTGGACCCAACTTCAATCCAAGATTATGAAATCT
GTCGAGTTCTGATTGGCTGTGAGCTTTGGAAAGGACATTATGTATGTGCA
GTAAAAATGTATAGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCA
GAAGCAAGGAAATGACACTGTAGGGGATAATGACATTGAACTTGGCTTGT
ACGGACTGAAAGACATATTCTTGACGACTTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037664XLOC_037664Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059895-proteinTCONS_00059895-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059895-exon-scaffold_331-1575043694:564190..564413TCONS_00059895-exon-scaffold_331-1575043694:564190..564413Clytia hemisphaericaexon
TCONS_00059895-exon-scaffold_331-1575043694:560092..561613TCONS_00059895-exon-scaffold_331-1575043694:560092..561613Clytia hemisphaericaexon
TCONS_00059895-exon-scaffold_331-1510915933:564190..564413TCONS_00059895-exon-scaffold_331-1510915933:564190..564413Clytia hemisphaericaexon
TCONS_00059895-exon-scaffold_331-1510915933:560092..561613TCONS_00059895-exon-scaffold_331-1510915933:560092..561613Clytia hemisphaericaexon
TCONS_00059895-exon-scaffold_331-1491911889:564190..564413TCONS_00059895-exon-scaffold_331-1491911889:564190..564413Clytia hemisphaericaexon
TCONS_00059895-exon-scaffold_331-1491911889:560092..561613TCONS_00059895-exon-scaffold_331-1491911889:560092..561613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:560092..564413 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.253907	0	0	0	0	0.860921	1.33543	1.06208	0.0840183	0.292547	0	0.17055	0.600539	0	0	0	0.599705	0.594958	1.03043	3.03818	1.20721	1.53488	0.58225	0	1.04073	1.81367	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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