TCONS_00059947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059947
Unique NameTCONS_00059947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059947 ID=TCONS_00059947|Name=TCONS_00059947|organism=Clytia hemisphaerica|type=transcript|length=851bp
acggtcgaaaaggtgtattgtaagAAGCTTCTTAAAGTTAAAGAAACTTT
TTCCTCTAATTAACTGCTAATGGGAAATCATGTGAAAGAATCGGTTCATG
CATCATACAGGAAAATGAGGGGTACGTTGGTAGCGTAAAAGTATGCATTT
GATGACTCGCGAATATGACTTttcttaaaactttttgtttcaatagactt
tttcataaattacgtcacgaagatcacttgcctcgttttgaatttattgg
catggtgattaactcccagcggattttattaaagctactttctattcata
aaaaaatcatttaatgtctcaagggacataatcaccatggaaattgtttg
aatacgaggcaagtgatgttcgtgactcaatttatgaaaaggtctattct
ttaGATTGTGGGAGAAGAGACATGAttgaaagagaaaatgaaattgaaaa
atgtttcatgtttgatatttttatgagcGATTGGCGACATATGATAAAAA
GTTCGTTTGATGAGAAAACGATCGAATTGCGATGTCGAAATTTCCAGCTT
CCGTTTATTGAGGACAAACCAGACAGATTGTGAGAGAAATTTTCCAGAAC
TTTACGAGTCTCTACAGAACCTTAATAAAATGTACAATACCCTGGTCAAA
CATTAAtcatatttttgaactttgggATTGACATTTTATTGGGACATACG
GCCGAcaaataaaatcttattttcgAATGGGGACTGGTAAGAAGTTTcgt
tattttcatatttttcaagaaTGAAGGTTTTCCATAGATAGAGAATTTAT
TTGGCCAACTTGTATAAATCTATTTGTATTTGAACAATCCCTGTTACCTA
C
Run BLAST on NCBI

transcript from alignment at scaffold_331:432900..433750

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059947 ID=TCONS_00059947|Name=TCONS_00059947|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_331:432900..433750 (Clytia hemisphaerica)
GTAGGTAACAGGGATTGTTCAAATACAAATAGATTTATACAAGTTGGCCA
AATAAATTCTCTATCTATGGAAAACCTTCAttcttgaaaaatatgaaaat
aacgAAACTTCTTACCAGTCCCCATTcgaaaataagattttatttgTCGG
CCGTATGTCCCAATAAAATGTCAATcccaaagttcaaaaatatgaTTAAT
GTTTGACCAGGGTATTGTACATTTTATTAAGGTTCTGTAGAGACTCGTAA
AGTTCTGGAAAATTTCTCTCACAATCTGTCTGGTTTGTCCTCAATAAACG
GAAGCTGGAAATTTCGACATCGCAATTCGATCGTTTTCTCATCAAACGAA
CTTTTTATCATATGTCGCCAATCgctcataaaaatatcaaacatgaaaca
tttttcaatttcattttctctttcaaTCATGTCTCTTCTCCCACAATCta
aagaatagaccttttcataaattgagtcacgaacatcacttgcctcgtat
tcaaacaatttccatggtgattatgtcccttgagacattaaatgattttt
ttatgaatagaaagtagctttaataaaatccgctgggagttaatcaccat
gccaataaattcaaaacgaggcaagtgatcttcgtgacgtaatttatgaa
aaagtctattgaaacaaaaagttttaagaaAAGTCATATTCGCGAGTCAT
CAAATGCATACTTTTACGCTACCAACGTACCCCTCATTTTCCTGTATGAT
GCATGAACCGATTCTTTCACATGATTTCCCATTAGCAGTTAATTAGAGGA
AAAAGTTTCTTTAACTTTAAGAAGCTTcttacaatacaccttttcgaccg
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037703XLOC_037703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059947-exon-scaffold_331-1491911889:432900..433750TCONS_00059947-exon-scaffold_331-1491911889:432900..433750Clytia hemisphaericaexon
TCONS_00059947-exon-scaffold_331-1510915933:432900..433750TCONS_00059947-exon-scaffold_331-1510915933:432900..433750Clytia hemisphaericaexon
TCONS_00059947-exon-scaffold_331-1575043694:432900..433750TCONS_00059947-exon-scaffold_331-1575043694:432900..433750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:432900..433750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.11169	0.247783	0.443816	2.28543	0.929729	1.78448	1.63159	0.308406	0.34798	0.168476	0.184298	0.141184	0	0.062947	0.0408657	0.124636	0.347011	0	0.185977	1.00658	0.642888	0.762824	0.747455	0.21626	0.508034	0.984556	1.2282	1.11594	1.25918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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