TCONS_00059877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059877
Unique NameTCONS_00059877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059877 ID=TCONS_00059877|Name=TCONS_00059877|organism=Clytia hemisphaerica|type=transcript|length=1483bp
CCAGTAACGGTACAAGTTTGAAAAGAAGAAGATTGTGAGAAGAAGAAAAG
AGGTTTCATTGCAATTGTATATTATTTGATTCCTAAACATAAAACAATGG
ATTTTTAACCTGTTCCTGCATCTGCCGTAGAATGTGGAATACGCTGTCTA
ACTACTTCTGCTGCTTCCGACATCTTCAATTGTGCTTGAAAGTTGCTTCA
GTTGATCAAATATACTTCTCTTTAAAAAGAAGCATGGGACGTGGGGTTAG
AAATCACGTTGAAATCCTGCAGAAATAagcaaattgaaaaaatacGTGTT
GAAAACTTTTAATGTAAATCTTTCTAAATTTCCGAGAATGTTGATTATTT
TGATGCCGTGTAAAGGTGCTCGGATCCTTTGCTCTCCACTCAGAAGTTTT
TGATACTCTCTGTTGAAAGGCTAGAGTTAACTTTTCTAATATCAGCAGGG
TGGTGGagtacacactttttaactTACGTACAGGTGGAAGAAGGTCATGC
GAATGATCACCCGTAACTGTACACATAACATgagttaaatttatttttta
cgaGCAGGCGGGTAAATTTCTGACCTGACATATCAATACAACCACTTTAC
ACACCAACGTAAAAAATGGAGGTGTTCTTGATGATCAAACGACAGAAACA
ATCCATATTTTTGGATGTAAAAGAAACGTGCCAAGTATTAGAAGTCAAAA
AAATGGTGGGCGGCATTATGAAGAAAAGCCCAGAAGATATCAAACTACTA
TTCAAAAGCTTACCATTAGATGACAGCAAAAGTTTGAAAGATGTAGGGTT
AACGTCACAAACAACAAAAGCACAATCTCCAGCATTAATTGGTCTGTGTT
TAAAGGAAGGAGACAACGATTTTGAGGAGCTTACCATAACACCGGTATCG
AAACCTCCAGAGCTTCCACCTCAAATGAAAACACAAGAATCGCCAACTGC
CGGATCGTAGATTCTTTTACATCAGAatgagaaacatttttttccaaaac
gtTGTAAGAAAACATTTTCCATTCCTATGCATTTCTTGTACGTAAAAAAT
GTTCTAATAGAAAAACCTTTCTTTTGTAAATAGTGAAAAAAAGAATGTAA
ATTCTTGTGTTTTTCTAATGACATTTTTGTGTGCTTCTGTTCACCTTACT
TGGCAAAGTTGTATTTTTCTAATCTACTATCGCGCCTTTATACAGTAGTC
TGTATAATTCActggaaaattgtaaaatacaaCCTTGCCAAGCTAGCTAG
CTCTTAACTTAATATTTCTAAGcttttttaaagagtttttttttacattt
atcGAGGGAATTAAAAGATACTTCACTCAAACTTTCACATAAAACTAGac
gtagtttttttttatttcagtctTCATTTGTCTTGTTTTCATCCAGCTTT
AGTTGGGATCCCCGTCATTATTGATGGTTAAGCTCTTAGCAGCTCCAAAT
AGTTTTAGATTGAAATTTGGGATTTTGTTCCGG
Run BLAST on NCBI

protein sequence of TCONS_00059877-protein

>TCONS_00059877-protein ID=TCONS_00059877-protein|Name=TCONS_00059877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MEVFLMIKRQKQSIFLDVKETCQVLEVKKMVGGIMKKSPEDIKLLFKSLP
LDDSKSLKDVGLTSQTTKAQSPALIGLCLKEGDNDFEELTITPVSKPPEL
PPQMKTQESPTAGS
Run BLAST on NCBI

transcript from alignment at scaffold_331:154603..164061-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059877 ID=TCONS_00059877|Name=TCONS_00059877|organism=Clytia hemisphaerica|type=transcript|length=9459bp|location=Sequence derived from alignment at scaffold_331:154603..164061- (Clytia hemisphaerica)
CCAGTAACGGTACAAGTTTGAAAAGAAGAAGATTGTGAGAAGAAGAAAAG
AGGTTTCATTGCAATTGTATATTATTTGATTCCTAAACATAAAACAATGG
ATTTTTAACCTGTTCCTGCATCTGCCGTAGAATGTGGAATACGCTGTCTA
ACTACTTCTGCTGCTTCCGACATCTTCAATTGTGCTTGAAAGTTGCTTCA
GTTGATCAAATATACTTCTCTTTAAAAAGAAGCATGGGACGTGGGGTTAG
AAATCACGTTGAAATCCTGCAGAAATAAGCAAATTGAAAAAATACGTGTT
GAAAACTTTTAATGTAAATCTTTCTAAATTTCCGAGAATGTTGATTATTT
TGATGCCGTGTAAAGGTGCTCGGATCCTTTGCTCTCCACTCAGAAGTTTT
TGATACTCTCTGTTGAAAGGCTAGAGTTAACTTTTCTAATATCAGCAGGG
TGGTGGAGTACACACTTTTTAACTTACGTACAGGTGGAAGAAGGTCATGC
GAATGATCACCCGTAACTGTACACATAACATGAGTTAAATTTATTTTTTA
CGAGCAGGCGGGTAAATTTCTGACCTGACATATCAATACAACCACTTTAC
ACACCAACGTAAAAAATGGTAAGAATTTATCAACCTAGGTTTTTACCATT
TCTCATTCCTTGTTGGATAGGTTTTTTTTTTAGATCATATAAATATAGAT
ATGATAAAAATTAGCCACAATTTATTCCCTGCCTCCACACTCCAGTCTGG
CAGTCAGGAGTTCTATCCTAACTAATCCAGACCCGATCAATCGAACTTGT
CGAACCAATCGAACAGTCAAACTAATCGAACTGCATCGAACGATTAGAGT
TCGATTAAAAACATTAATCGAACCTAATCGAACACTCACAATTTTTGAAG
CAATAGCAGTTCGATTAGTTCGGTCAGTAAAAAGTTCGATATAGTTCGAT
GATATTAAATCCTCGTATCTTCCCTCATGTCTCTGGCGCTAAAAGGATAC
AGAAAAAGTGTGTAATCCGTTATCGGAAGTAATTTCCCGGCTTACCTGGA
CTTACATTCCGAATTTGGCTTTAAAAAGAAGCTAATATACGGTGGCGGAG
CAGCACAAACTTGTCGAACAAAACAGAACAAAATTGGTTTATCGAACTGA
TCGAACCGAAAACCACTGATCAAACTTAATCGAACACTCACAATCTTTTA
AAAAATCTTAGAGTTCGATTAATTTTTTTAAAATGGCGAAATGCGAAAAT
CGAATTTAGCAAAAAAAATTTGAAAAATGACCCTACAAGATTTGACTATA
TCTTTTTATTCCATGGAAGAGATTACTTTCAAATAAAAAATGTATTAACA
ATGAATGGGTAAGCTTTCTAGAAATCCAAACATAAATTGGGTGCATGTCA
CTAGTCCGACACTTTCTATTCCGACAGTAAAATAGTCCGAATTTATGAAA
TAAATTTACAATTTAGAAGTCTTTTTTTCCGATATCACTTTTGTCCGAAA
ACGAAAGATTTTAGAGTGTCGAATGTTGAATAAGGGTTTTTCACTGAGAT
AATATTAATAAAAGTTCATTTTGGCGGCATTTTGACATAATTAGACATAA
AGGACCAATCAAATTTGCGTAAAGATAATTTATTGCAAAAAGAATGCACT
GCCTTTAAGTTTTCCTTTTTGCATGTTCAGAATTATGCTATAAGGGTTGT
AAATTGCAAACTTTAATTCCAGCCCCCACCCCCGTCAAAAAAAAGAAGGG
TCGTAATAGCTTAAATCCAATTTCTTGACTCTTGAAAGCATAATCCTAAT
AAGCTTCCCAAAATTTAAGAAAAGTCGGGTTTAGGAGCCCAACCTCAAAG
TCGGAAAGTGGTTGCTTATAAAAGATGTGTCTCCTCTTCAGCGATTTATA
TGTTGTTTTTTTGACTCGTTGTCAGACAAAATTGTTGTCGGAATACTGAC
ACATTCGTCAAATCCAACGTCGGACATTTTTACTGTCGGACTAGAAAGTG
TCGGACTACTGACGACCTTCCCATAAATTGCATAGCTTTTACCAAAAAAT
AGCACTTTAGGATCAGAAACAGTCAAAAACCAGCTTTTTCCAATTTTCTT
TGAGTTACAGGAATTAATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACATAGTAAAACTATTCAGG
AACTTAGACCTTTTTACAGAATTTCAAAAAATCTGTTAGTTCTGGAGATA
TATTGAAAAGTTTAGACATGGGTAGTTTGCGTTCATGTTTCGCGTTCCCA
AACCAAACGCACGTGATTTAATCGTTCGATGGAGTTTGATTAGTTTGACT
GTTCGATTGGTTTGACAAGTTTGATTGATCGGGTCTGGCCTAATTAAGCA
TATTTTTTTCGATCGCACTTCTTTTAGGATTATCCCTTTGTTTTTCAATC
CTAATTAAGAATATATATCGAATTTTCAGTTTTTTTCCAAAAATACAAAT
TTCCGCATATTCTTATCAGCCTCCAATGAAAGAATTTAGTGTCTAGAGCA
GATTTTGAAAGTTTGATACAGTAGTATGGATGGAGTCTTGAGTTATGACA
TTTAGAAAAATGTTCTATTACCCTCAACAAAAGAAGAAAGAAAAAAAGCG
CGGGTAAAAAAGCGCGGGAAATTATTACGCTTGTAAATATTCCTATAATT
AGAACTAACGTGCCTAATTAGGCAGATTTTTACTTAAATGGCGTCATTTT
GAAGCCCTCCGCCCAAATTTTGTTTTGATTTTTGGCTCAATATATCATCT
TTGACCTGCTCTATCTATTGTTCATAGTTAGAATTTGCGGATTTTGTTTG
TTGGTGAAGAATCTGAATTTTAAAAATCATATTCTTAATTAGAATTGAAA
AACAAAGCTGGATAATTCTAATTAAGAAAGTCTGTGCGATCGAAAAAAAA
TATGCTTAATTAGGATAGAACTCCTGACTGTCTGGAAAGGAGGGAAATGT
TACACCGGAGCTGCGCCAACTTAACTGGGAAAAGTTGAGGGCAGCAGATC
TCAAATTTACGCTGGAGATATCCGGCGCACAAGCCGCAATTTCCAGACTG
GCCTCCAACTGCACTTTATTCTCACTACACCAGACAGTACTAATCGAACG
TTCGATATTGTGATCAAATGTGATCAGTCAGTCAGGAACATTGTCTTAGT
TAGGACAATGGCCTAACTAGGAGAATGGCCTAAGAAGGACATTTTTTTAT
GTCCTAATTAGGCCATAGACAGATAGATGACGGCCTAAGTAGGACATTTT
TAATTTGAAACCCCCATTTTAAACATTTTAGAGGAAAATGCGCATGCTAA
AAACATAACCAATCGAAAGAGCGACCTTTAATTGATATGTTGAAAATTTC
TTCAAAATCTGCAGAAGGGTTTTTTCTCTATGTGTCTTTGAATGTACAAT
ATATGCTCTTTATTTCATTTTCACTTGTTTTGAAAGATGACTGCGGCAAA
CACTTGTTCTACCATTATGAAAATTCCCGATTTTAGAAATAAAGGTCTGT
CTACATCATAAAATTTCGGGTTTTTGTAACATGTAGACTAGGGGCTTGAG
TTTTCAAATTAAGATATTTCTTGATTCCTTCAATCAAAATATTTGAAAAT
CACTAAGAAGCTTCATTTTTTGGTGCTCTTTCGATTGGGGATGGTTAGAA
ATTGCGCATTTTTCTTGATTTTGAGTTATTAGGACATTTATCAGTCCATC
ACAAAGTGCCATATAAACAAAACTCAACATTCTCTTCTCACAAAAGTTGT
CTAAAGCGTTCACTTCCACAATAATTTATGTAATTGCAATTTCGGTCAGT
CCACAGTCGGCTTCAACATATATACACGTGTATTTATTTACGTGACCGAA
GTGCCTAGTAAAACAATCCGGGGATAAGTGGCGAAGGAACACAGCAGATT
ATTTGTAAAGTAAAGAAATATCTTTTGGCATTGACAATCAATTATAATAT
ATTATATTATATTTCCCTAATTCAAAAATCAAAAATTCATTTTTCATTCC
CGAAAAATAAAAATAAGAAAATAATGAATTAATATTACATACTAAGACAC
CCCTGTCTTTTACTCTCGTTTAATTTCTGATCTCGGAATGTGCAAAACGC
CCGTCCCCGCCCAATATCCACCCAATCAGCTTAAATTCACTTAAATTGTC
CTTTGACTGTCAAAAAATAATATTTAAAAATTATGAATTTAAAATAATTA
CAAAAACAATTAGGTCATGTGACAAATGATATTTATTGAATTGTATTTTG
TTAACAATTGTTGGATTGTATGGATTCTTAATATTTTTTAAGACTTTGTG
ACACTGCGAGAAGCTTTTATTGTAAGTGAGATTCGTCTCCTTTTTTAACT
ATTTTTCTCCTTTTTTAACTATTTTTGACGGCATAAACTTTGACCCCCTC
CCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCTTACGGCCAAAAGCCGT
TAAAAAAAGGAAGGATTGTCGATGGCCCCTTACCATCAACTGCTCTAACT
TGGGACTATCTGACAAAACATGGGACGGCAATCCGGTCATCATTTCACCG
AACCTCTAAAGTCATTTAATTTGAGTCAATGAACGGCGTATTAAAAGATA
CACAATTTCTCTTTCGCACTGAGTAGGCTTTTAAATCGAAATATGAATAT
TGTTCCGTAGTGGAACACACGCGAGTGTATAACAAAGAAGAGTAAATTAG
TGGCAGAACAATGGAGCGTTTGACGTCACTTGCGCGGCAAGTTGCACACT
CGTTTTTTGTTAATCCCATCGGGCACTAGGCGGCTAGGCAGCGGGCGTTC
TGTAATTCCCCAATCGGCGTCCGGTCATTTTGAATGAAAACAAAAAAGTT
AAAAAGGGCGCACAGTTATCGTGACACGTTATGACAGAAAGTATGATTGA
TAAACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGGGATTTAACA
GGTAAGTGAAAATACAGGCCAGATATCAACAGTCCCATGTTTCGACCAAT
CTTCCCAAGTTAGAGCAGTTGAAGGTAATTAACAAAGCTGCCAACCCTAC
CATTGCCCCTATAAGGATCCCTGGGATCCTAAGTTAAGTTTCAGGGTACG
AATGCCCCTAAGAAGGCCTTCGGCCTTATATTATGACTCTCGAGCTGCTT
TAAGAACAATAATTTCTAAAAGGTAAATATTTCTTTTTGAATTAAGAAAT
TTCATCTTTTATCATTCTAATGAGTATAATATTTCTTTATAAGGTGCTTT
GTTGTCTTTTTAATCTTTGACTTTGTGTAAACTTGCATATGTTTTGCATA
TTTTCCAACTAAATCCAACCACGGCTTTTTCGCTCCTGTATTTTTGCATA
TAATTCAATATGGCGGATGGAAAGGCGAAGAGGTTTATCGAAGCCAATGA
TTTAAAAATTATGAATACCCAAGTATTTCTCTTTAAATCACAAGCGAAAT
CAGGCAAAACTTTGTCTTTTTGAACAAAATTAGCGTTTTTTTTAATAAAG
TAGCCTAACTTCCAAGGATGATTGTTTCATTGGTGTCCTGATCATTACCA
GAAACAGAAGGGGGCCCAGAACTGAGCCCTGTGGAACTTCACTTGTAACC
TTTGATTTGTTTGACAGAAAATGTGTTTACTGAGAGACTTTCTGGTATGT
CTCAGTAAGAAACTGTTGTTTCCAGTTTAACAATCACATTTGTATATAGC
TTGTGCAATAAAATTTGTACCTTATCAAAGGCCTTGCTAAAATCCAGATA
GATTACATTCAACATTTTCAAGTTAGTGAACTATCATCAAGATCATCCTG
GTCTGAAAGCGTGCTGCGTTGAATTGAATGAGTTGTTTCTTCAAGGCAGG
ATTTGTAATTTCTCTCTGACTACTTTCTTGAATATTTTGGTTGTGATTGA
TGTCAGGAAAATGGGTCGATAATTTTCTGGTACACCTTGATCTCTCTTAA
AGATTGGTGTAATCTTACTTGGTGTAGTGGTTCCTATGTCAAAGTTGTTT
TGCCATAATCTCATCTGAAGTGGTTTGGACAGAGGTTTCTTGTACATTTT
GAAAAATTTTGTTGGTACTATCTTTGTTTTGTCAATTGTTTGGGGGCTTT
ATGCTATTGAAATATGTTTTTATTTTTATTTCCAAAAATTAGATGTTACA
ATTTAAGACCTAAACTATTTGACCTTGCTGGCCAATATTTGTGCATTTTA
AAGCATTGAGAACAGTATAATTTTGCATGAAAATCACGTACAATAGTTGT
AGCTGGAACGCTTTGAAAAGTAGGTTTTCATTCTCATTACCATGTAAAAG
AGTTATTACGGACATACAATATCTTCGTGCTTTGAGAAATCCCTTAACGA
TTCCCGATCGACGTTGTTTTTTTTCTTAACTGACTATCCCACCAGTACTT
TTAGCGCTGATGTGAAAATGGGCCTGCGTGACCTGAAGTTTTCAAAGCTG
CAACGGAGGATATCATCTATTTTTTTTTCTAATCTTGTCAAAAATCCTTA
TCAACCTTGGACTTTTTTTTCTTTGTTTACAGGAGGTGTTCTTGATGATC
AAACGACAGAAACAATCCATATTTTTGGATGTAAAAGAAACGTGCCAAGT
ATTAGAAGTCAAAAAAATGGTGGGCGGCATTATGAAGAAAAGCCCAGAAG
ATATCAAACTACTATTCAAAAGCTTACCATTAGATGACAGCAAAAGTTTG
AAAGATGTAGGGTTAACGTCACAAACAACAAAAGCACAATCTCCAGCATT
AATTGGTCTGTGTTTAAAGGAAGGAGGTAATTGCGTCTATATTTATCCTT
TTGACAAAATCTCTAAAGATACCGGTTTTAAAAGTAAAATCTTAAGCTTT
CACACTTTTCTTTTCATAGTTTCTCCTGATTTGTTTCCCCTTTTTGTACC
AAATTTCCACTTTTTCTTAATTGCTTAAGTATTGTCTGAAAGGGGAGGAC
ACTTTTTTATTGATGATTCTCAGCTGAAATTTCAATATGGTTATTGCTCT
CTAATGTTTCGTGATAAGATATTATTGGGCTTCAACTCTAGAATATAAAT
AATATAAGAATTCGTTTTTAATTTGGGGGTTACACTAAAATACGATTTGA
ATCTGAAAGATTTGAGATGTTCTAAAAAATCAGGTACTACCATAGTGTCC
TCCCCTGGATTCAGGGGGGTTTGATTTTTGTAAGCATCGGGAAAGAATTT
CTTTTGGAGCCAGGGGGGGGACAAATTTAGGGAGGGGAAAAGGATTTCGC
AGATCATCCAGTAAAAATCCAAAAATGAAGGTATTTTGAGGCCACTTTTG
CTATTGTTTTTAGGCATTTTTGATCTGAGGAGGACTCGAAAATTTTGGGA
GCCAGGGTGGGGAAAGCTGAAGGGGGGTGGGAAATTTTAAATTTATGTAT
TGGGGGAACAGACCCTGTAGGACACTATGACCGCTCCTGTTAGACAGATT
TTTCTTAGAAATATGTTTGAACTTTGAAATAAATTCTAAAATAATCTGCC
TTTGCTGGTCTGGTTAAAATGTATTCATCTTAGCAATTATATTATCCACC
TTAAGTGTTCATTCAAATTATCGTCTCTTTTTTTACAGACAACGATTTTG
AGGAGCTTACCATAACACCGGTATCGAAACCTCCAGAGCTTCCACCTCAA
ATGAAAACACAAGAATCGCCAACTGCCGGATCGTAGATTCTTTTACATCA
GAATGAGAAACATTTTTTTCCAAAACGTTGTAAGAAAACATTTTCCATTC
CTATGCATTTCTTGTACGTAAAAAATGTTCTAATAGAAAAACCTTTCTTT
TGTAAATAGTGAAAAAAAGAATGTAAATTCTTGTGTTTTTCTAATGACAT
TTTTGTGTGCTTCTGTTCACCTTACTTGGCAAAGTTGTATTTTTCTAATC
TACTATCGCGCCTTTATACAGTAGTCTGTATAATTCACTGGAAAATTGTA
AAATACAACCTTGCCAAGCTAGCTAGCTCTTAACTTAATATTTCTAAGCT
TTTTTAAAGAGTTTTTTTTTACATTTATCGAGGGAATTAAAAGATACTTC
ACTCAAACTTTCACATAAAACTAGACGTAGTTTTTTTTTATTTCAGTCTT
CATTTGTCTTGTTTTCATCCAGCTTTAGTTGGGATCCCCGTCATTATTGA
TGGTTAAGCTCTTAGCAGCTCCAAATAGTTTTAGATTGAAATTTGGGATT
TTGTTCCGG

Coding sequence (CDS) from alignment at scaffold_331:154603..164061-

>TCONS_00059877 ID=TCONS_00059877|Name=TCONS_00059877|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_331:154603..164061- (Clytia hemisphaerica)
ACAACGATTTTGAGGAGCTTACCATAACACCGGTATCGAAACCTCCAGAG
CTTCCACCTCAAATGAAAACACAAGAATCGCCAACTGCCGGATCGTAGGA
GGTGTTCTTGATGATCAAACGACAGAAACAATCCATATTTTTGGATGTAA
AAGAAACGTGCCAAGTATTAGAAGTCAAAAAAATGGTGGGCGGCATTATG
AAGAAAAGCCCAGAAGATATCAAACTACTATTCAAAAGCTTACCATTAGA
TGACAGCAAAAGTTTGAAAGATGTAGGGTTAACGTCACAAACAACAAAAG
CACAATCTCCAGCATTAATTGGTCTGTGTTTAAAGGAAGGAGATGACAAC
GATTTTGAGGAGCTTACCATAACACCGGTATCGAAACCTCCAGAGCTTCC
ACCTCAAATGAAAACACAAGAATCGCCAACTGCCGGATCGTAGGAGGTGT
TCTTGATGATCAAACGACAGAAACAATCCATATTTTTGGATGTAAAAGAA
ACGTGCCAAGTATTAGAAGTCAAAAAAATGGTGGGCGGCATTATGAAGAA
AAGCCCAGAAGATATCAAACTACTATTCAAAAGCTTACCATTAGATGACA
GCAAAAGTTTGAAAGATGTAGGGTTAACGTCACAAACAACAAAAGCACAA
TCTCCAGCATTAATTGGTCTGTGTTTAAAGGAAGGAGATGACAACGATTT
TGAGGAGCTTACCATAACACCGGTATCGAAACCTCCAGAGCTTCCACCTC
AAATGAAAACACAAGAATCGCCAACTGCCGGATCGTAGGAGGTGTTCTTG
ATGATCAAACGACAGAAACAATCCATATTTTTGGATGTAAAAGAAACGTG
CCAAGTATTAGAAGTCAAAAAAATGGTGGGCGGCATTATGAAGAAAAGCC
CAGAAGATATCAAACTACTATTCAAAAGCTTACCATTAGATGACAGCAAA
AGTTTGAAAGATGTAGGGTTAACGTCACAAACAACAAAAGCACAATCTCC
AGCATTAATTGGTCTGTGTTTAAAGGAAGGAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037657XLOC_037657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059877-proteinTCONS_00059877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059877-exon-scaffold_331-1575043694:163444..164061TCONS_00059877-exon-scaffold_331-1575043694:163444..164061Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1575043694:156036..156279TCONS_00059877-exon-scaffold_331-1575043694:156036..156279Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1575043694:154603..155223TCONS_00059877-exon-scaffold_331-1575043694:154603..155223Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1510915933:163444..164061TCONS_00059877-exon-scaffold_331-1510915933:163444..164061Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1510915933:156036..156279TCONS_00059877-exon-scaffold_331-1510915933:156036..156279Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1510915933:154603..155223TCONS_00059877-exon-scaffold_331-1510915933:154603..155223Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1491911889:163444..164061TCONS_00059877-exon-scaffold_331-1491911889:163444..164061Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1491911889:156036..156279TCONS_00059877-exon-scaffold_331-1491911889:156036..156279Clytia hemisphaericaexon
TCONS_00059877-exon-scaffold_331-1491911889:154603..155223TCONS_00059877-exon-scaffold_331-1491911889:154603..155223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:154603..164061 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
219.104	222.405	189.687	202.545	118.633	92.4693	95.9146	102.33	94.406	83.6552	69.4329	75.3165	53.3761	52.3927	56.072	60.3096	72.3314	79.4941	43.1901	49.0055	83.7354	79.6245	123.088	106.012	70.1422	70.7122	72.3214	60.027	62.6208	64.4305
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00059877 vs. Swiss-Prot (Human)
Match: ELOB (Elongin-B OS=Homo sapiens GN=ELOB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.119e-27
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:  616 MEVFLMIKRQKQSIFLDVKETCQVLEVKKMVGGIMKKSPEDIKLLFKSLPLDDSKSLKDVGLTSQTTKAQSPALIGLCLKEGDNDFEELTITPVSKPPELPPQMKTQESPTAGS 957
            M+VFLMI+R K +IF D KE+  V E+K++V GI+K+ P++ +L      LDD K+L + G TSQT + Q+PA +GL  +  D+ FE L I P S PPELP  MK Q+S ++ +
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADDTFEALCIEPFSSPPELPDVMKPQDSGSSAN 113
The following BLAST results are available for this feature:
BLAST of TCONS_00059877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOB3.119e-2746.49Elongin-B OS=Homo sapiens GN=ELOB PE=1 SV=1[more]
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