TCONS_00059776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059776
Unique NameTCONS_00059776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059776 ID=TCONS_00059776|Name=TCONS_00059776|organism=Clytia hemisphaerica|type=transcript|length=718bp
CACTGCTTGATCTCAAAAACAGAAGCTGtatatgaaaaatatatatcagT
TTGTcgttcaaaataaataaaataaataaaataaaattaacgtGTATTAA
ACTAGACGAATCCCCAAATGAAAAAAGTGTGGAGTGTTTCCTCACACGTA
GACAATCAGAAGATCTGGTAGTAACAAAAGAAATGGGGATAAAAGAAAGG
TTTCCTTTAATGAACTGCCGTATCTAAATCGAAATACCTTGTTTGCTTCT
TTGTTTGTGGATATATAATCTTCAGgaacttaatttttcttttcctataG
ACAGGGGGCATAATCCACACTTTGGCCATAACAAGTTGTTTTTGGTGCTG
ATTCCGAAAATCATTTTGGCAGAAGATCAATATTCAGCCTGCTACCCCTA
TGCACCAAGTTGGCAAAAATGTCACAATATAGGCATTTCTGTGTGGAGCT
TGTACCCAACATTTTTTGACTATTTCTGGGTAATGTATTATTTTCTTTGG
TCAAAAGTCTTCCAAATAGGCCACTGATGATGTCACAAGACTTAGATGAA
GTTTGGGATCTGGTGCTGGTACGCACCGGGGTggccaaaatactaaaaat
tgatgaagtttgaaataatcacttttcttGAGGTTGCAGCACATATATCA
ggtcaaaaaaattcttcttgCAAGATTTTGCCATCTTGGGCATTTCAGGG
GTATGCACCAGGTTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_330:474295..475012

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059776 ID=TCONS_00059776|Name=TCONS_00059776|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at scaffold_330:474295..475012 (Clytia hemisphaerica)
GAACAACCTGGTGCATACCCCTGAAATGCCCAAGATGGCAAAATCTTGca
agaagaatttttttgaccTGATATATGTGCTGCAACCTCaagaaaagtga
ttatttcaaacttcatcaatttttagtattttggccACCCCGGTGCGTAC
CAGCACCAGATCCCAAACTTCATCTAAGTCTTGTGACATCATCAGTGGCC
TATTTGGAAGACTTTTGACCAAAGAAAATAATACATTACCCAGAAATAGT
CAAAAAATGTTGGGTACAAGCTCCACACAGAAATGCCTATATTGTGACAT
TTTTGCCAACTTGGTGCATAGGGGTAGCAGGCTGAATATTGATCTTCTGC
CAAAATGATTTTCGGAATCAGCACCAAAAACAACTTGTTATGGCCAAAGT
GTGGATTATGCCCCCTGTCtataggaaaagaaaaattaagttcCTGAAGA
TTATATATCCACAAACAAAGAAGCAAACAAGGTATTTCGATTTAGATACG
GCAGTTCATTAAAGGAAACCTTTCTTTTATCCCCATTTCTTTTGTTACTA
CCAGATCTTCTGATTGTCTACGTGTGAGGAAACACTCCACACTTTTTTCA
TTTGGGGATTCGTCTAGTTTAATACacgttaattttattttatttatttt
atttattttgaacgACAAActgatatatatttttcatataCAGCTTCTGT
TTTTGAGATCAAGCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037605XLOC_037605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059776-exon-scaffold_330-1491911889:474295..475012TCONS_00059776-exon-scaffold_330-1491911889:474295..475012Clytia hemisphaericaexon
TCONS_00059776-exon-scaffold_330-1510915933:474295..475012TCONS_00059776-exon-scaffold_330-1510915933:474295..475012Clytia hemisphaericaexon
TCONS_00059776-exon-scaffold_330-1575043694:474295..475012TCONS_00059776-exon-scaffold_330-1575043694:474295..475012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:474295..475012 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.315676	0.0772098	0.563973	0.148553	0.448057	1.00672	0.234942	0.509274	0.564931	0.464204	0.0463559	0.144423	0.118735	0	0	0.0536306	0	0.155067	0	0.0986125	0.0799176	0.0726567	0.673513	0.73467	0.191147	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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