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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059694 ID=TCONS_00059694|Name=TCONS_00059694|organism=Clytia hemisphaerica|type=transcript|length=2006bp
GGAGCAGCCTCCAAAGTATCAACATTACGGAGTGCTTTTGCAGAGAGGAA
AGGCTTGTGTTGGGTtactttcattttgaaatacatttaatttttcaata
gatttcatttgataaaacttaaaaatgagtGAATCCAAGCCAGACATTTC
AGAAGTTGCTGCCTTCGACTCATCCAAGTTAAAACATGTCGAAACAGAGG
AGAAAAATACACTTCCATCGAGTGATTTGATTCAAGAAGAAGCAGTTGAA
TCCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACCTGAAATCAGTTGA
AACCGTTGAGAAAAACACTCTCCCAACTGCTGCAACCTTAAAAGAAGAAA
CTCGACCAGAGGTCTTGCCTGATGTTTCTGGAGTTGCAGAATTTGATGCT
TCTAAATTGAAACATGTTGAAACAGAAGAAAAAACCGTTTTACCCACTTC
AGATGTTATTCAAGAAGAAGCAGTTGAATCACGTGCAGAGGTCAAAGTCT
TTGACAAATCTAACCTGAAATCAGTTGAAACTGTTGAGAAGAATACTCTC
CCAACTGCTGCAACCTTGAAAGAAGAAACTCGACCAGAAAGTTTGCCAGA
TGTTTCAGGTGTTGCTGAATTTGATGCCTCCAAATTAAAGCATGTAGAAA
CAGAGGAAAAATCTGTTCTCCCCACTGCTGATGTTATTAAGGAGGAATCT
GTTGAATCAAGATCTGAGGTTAAAGCGTTCGataaatcaaaactcaaatc
gGTTGAAACAGAGGAAAAGAACACTTTACCAACTGCTGCAACTCTAAAGG
AGGAAACTCGACCAGAGGTGTTACCAGACGTGTCGGGCGTTGCTGGATTT
GATCCATCCAAATTAAAACATGTAGAAACAGAGGAAAAAACTGTTTTACC
CACCGCAGAAGTGATTAAAGAAGAATCGGTTGAATCTCGGTCAGAAGTTA
AGTCTTTTGATAAATCTAAACTTAAATCTGTAGAAACAGAGGAAAAGAAC
ACTTTGCCAACTGCTGCCACCCTCAAAGAAGAAACGCGACCAGAAAGCTT
GCCTGATGTTTCAGCCGTTGCTGGATTTGATGCCTCTAAATTAAAGCATG
TAGAAACAGAGGAAAAAACTGTTCTCCCCACCGCTGATGTCATTAAAGAG
GAAGCGGTTGAATCAAGATCTGAGGTTAAAGcgtttgataaatcaaaact
taaATCTGTTGAAACAGAGGAAAAAAACACTTTGCCAACTGCTGCAACAT
TAAAGGAGGAAACTCGTCCAGAGGTGTTACCAGACGTGTCAGCTGTTGCA
GGATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGAGGAAAAAACTGT
TTTACCCACCGCAGATGTAATAAAGGAAGAGTCGGTCGAATCTCGATCAG
AAGTCAAATCTTTTGATAAATCTAAACTTAAATCTGTTGATACAGAGGAA
AAGAACACTTTACCAACTGCTGCAACCTTAAAAGAAGAAACTCGTCCAGA
GGTGCTGCCAGATGTTTCTGGAGTTGCAGGATTTGATGCTGCTAAATTAA
AACATGtagaaacagaagaaaaaaCCGTTTTACCCACCGCAGAAGTCATT
AAAGAAGAAGCAGTCGAATCACGATCTGAGGTTAAAGCTTTCGATAAATC
AAAACTTAAATCCGTTGATACAGAAGAAAAGAATACTTTACCAACTGCGG
CCACTCTCAAAGAGGAAACTCGCCCAGAGGTCCTTCCAGATGTTTCAGCT
GTTAAAGATTTCGACAAGGGTCAATTGAAAGAATCAAAGACCGAAGAAAA
GGCAGTATTACCAACCAAAGAAGTCATCGATGAAGAAAAACGTGAATCGA
GGGCGGAAGTCAAAGCTTTTGATAAATCTAACCTGAAAAAAGTAGAAACT
GTCGAGAAGAATTCACCACCAACTGCTGAGGGCGGTGTTACCCAGTATGT
CTTGGCCGTTGGCTTTGCTTTTGTTGCTTGGGTCTATTTCCAATATTTTC
GATAAA Run BLAST on NCBI transcript from alignment at scaffold_330:309159..314718+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059694 ID=TCONS_00059694|Name=TCONS_00059694|organism=Clytia hemisphaerica|type=transcript|length=5560bp|location=Sequence derived from alignment at scaffold_330:309159..314718+ (Clytia hemisphaerica)
GGAGCAGCCTCCAAAGTATCAACATTACGGAGTGCTTTTGCAGAGAGGAA
AGGCTTGTGTTGGGTtactttcattttgaaatacatttaatttttcaata
gatttcatttgataaaacttaaaaatgagtGAATCCAAGCCAGACATTTC
AGAAGTTGCTGCCTTCGACTCATCCAAGTTAAAACATGTCGAAACAGAGG
AGAAAAATACACTTCCATCGAGTGATTGTAAGTATAAAACTTGTCTCCTG
CTCTTTTTGCTGTACAGCTAGGCTCCTCATTTTAAACAAGAGGTGTATTT
TTGGTCCGTCTTGATGTCAATTTATCTACTTCctcttgtttttttctttt
gtaaaccTGCTGAAATTCAGGAGATTAATATTAGATATCATGGAATAGAG
ATAAAATCTTTCAGTTGGATTATCCTTCTTGAAATAGCTACAACATGCTA
GGTGTAATATACAGGACAGTTGTATATATTTGTATATGCTACCCACTTtt
tttcaactaaaatggcTGTATGAGTATTTTTACTTTCTCATGGCATGACT
CTGCATGAGCAGCCGTcagcagatttttttaaatatctgttatttttttt
caggagagtaaattttttatggataaatctaggagagacttttcttcaaa
acacccatgtaaaatccaggggtcgccttaaagacatctgttcttaaaat
ccatgagcacattttaaggaaaaacacatacacgtcttctttttttttaa
gaaactagttttaccaagcatcctcaatgtttcttaagaaatcggccttt
tgagccgatgtttcttacatgtttctaaactttttgacataattagcctt
gattggaaggttcttataaaaaaccgaattaaaaaatgttattttctcat
tcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNagatgccagattttttttccagggagctt
cataattttcttaaaaggtctcattttctaggagcattttaattttctta
gagaatagctgttatatttttccaggagcgtAATATTTCTGGTGCTAATA
AATTAGGGTCAGAATAAGTGCAGGGGGTGGGTTGGTTGGAAAATTCTTCA
GATTTTAATAAATAACTTTACTAGGGAAGTTGGAAATTATTGCACCTCTA
AATACctccaaaataaggtaattatagaCTACAGATAAAGCCTGTAAAGG
CTTGATAtttatttagagcaaaataagacATCTATCATGATCATCATGAT
ATCGCGTTTAGCAAAAGGTCAATGATGGTAGCCAATTTGTTTTACATGTG
CACTACTTTGTTCTTTGTGTGCACAGACTTGTtagaaacaagaagaaaaa
tcaattgGAAAATCCTCCAATCCCCTAACAGTACTACTAGTACTATACAT
TTGTGTCATTCCCTAGATCATCAGCTATACCTCGAAACTACCTTTTTCCA
GCGGTTTTagcaaaaataatatttaaaaattgttgGCAACTTCTTAGAGT
ATGTCAAGAGTTAGCGAAAGTGGTAAATGTTAATATCCTCACAAAATAAT
CTAGACAACATAATCCTTTTAaggggccccccagcggtttgcgtgaatgc
gtgaatgggcattttcagttgcgtgaatgcgtgaaaattgggaaaaaaat
gtgaatttttccttttttccaccgatcaatgtgcagttttcccgattttc
caatgtttccccgaatttttccgaaaattttccaatttcctgAAAAAACA
GGTTATTGCCTGAAAgttgaggaaaatttgcgtgaatgcgtgaatttcga
aaaaaaattgcgtgattgtgtgAATTGAGGGtctgctggggggggggggc
tNAAATTGCGTGATCGTGTGAATTGAGGGTCTGCTGTGGGGGGGGGCCTC
TTTTAATCCCCACCCAAAATGCTTGAACAGGAGACTTGCATAGCTTTAGT
AGCTTAACCCGTCCTACAATGGACATCCTACAAGGGTTATCAAACCCTCT
GGTGTCAAATTTTAAATATCCTGAAACCCTCCCTTGAAACTCCTATCCTA
TAGGGGTTGAAGCTATGTTATATAACCAATAATAAAAGTTTGAAGTATTT
TCAATGTGTATTTCATTCTCTTTTAGTGATTCAAGAAGAAGCAGTTGAAT
CCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACCTGAAATCAGTTGAA
ACCGTTGAGAAAAACACTCTCCCAACTGCTGCAACCTTAAAAGAAGAAAC
TCGACCAGAGGTCTTGCCTGATGTTTCTGGAGTTGCAGAATTTGATGCTT
CTAAATTGAAACATGTTGAAACAGAAGAAAAAACCGTTTTACCCACTTCA
GATGTTATTCAAGAAGAAGCAGTTGAATCACGTGCAGAGGTCAAAGTCTT
TGACAAATCTAACCTGAAATCAGTTGAAACTGTTGAGAAGAATACTCTCC
CAACTGCTGCAACCTTGAAAGAAGAAACTCGACCAGAAAGTTTGCCAGAT
GTTTCAGGTGTTGCTGAATTTGATGCCTCCAAATTAAAGCATGTAGAAAC
AGAGGAAAAATCTGTTCTCCCCACTGCTGATGTTATTAAGGAGGAATCTG
TTGAATCAAGATCTGAGGTTAAAGCGTTCGataaatcaaaactcaaatcg
GTTGAAACAGAGGAAAAGAACACTTTACCAACTGCTGCAACTCTAAAGGA
GGAAACTCGACCAGAGGTGTTACCAGACGTGTCGGGCGTTGCTGGATTTG
ATCCATCCAAATTAAAACATGTAGAAACAGAGGAAAAAACTGTTTTACCC
ACCGCAGAAGTGATTAAAGAAGAATCGGTTGAATCTCGGTCAGAAGTTAA
GTCTTTTGATAAATCTAAACTTAAATCTGTAGAAACAGAGGAAAAGAACA
CTTTGCCAACTGCTGCCACCCTCAAAGAAGAAACGCGACCAGAAAGCTTG
CCTGATGTTTCAGCCGTTGCTGGATTTGATGCCTCTAAATTAAAGCATGT
AGAAACAGAGGAAAAAACTGTTCTCCCCACCGCTGATGTCATTAAAGAGG
AAGCGGTTGAATCAAGATCTGAGGTTAAAGcgtttgataaatcaaaactt
aaATCTGTTGAAACAGAGGAAAAAAACACTTTGCCAACTGCTGCAACATT
AAAGGAGGAAACTCGTCCAGAGGTGTTACCAGACGTGTCAGCTGTTGCAG
GATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGAGGAAAAAACTGTT
TTACCCACCGCAGATGTAATAAAGGAAGAGTCGGTCGAATCTCGATCAGA
AGTCAAATCTTTTGATAAATCTAAACTTAAATCTGTTGATACAGAGGAAA
AGAACACTTTACCAACTGCTGCAACCTTAAAAGAAGAAACTCGTCCAGAG
GTGCTGCCAGATGTTTCTGGAGTTGCAGGATTTGATGCTGCTAAATTAAA
ACATGtagaaacagaagaaaaaaCCGTTTTACCCACCGCAGAAGTCATTA
AAGAAGAAGCAGTCGAATCACGATCTGAGGTTAAAGCTTTCGATAAATCA
AAACTTAAATCCGTTGATACAGAAGAAAAGAATACTTTACCAACTGCGGC
CACTCTCAAAGAGGAAACTCGCCCAGAGGTCCTTCCAGATGTTTCAGCTG
TTAAAGATTTCGACAAGGGTCAATTGAAAGAATCAAAGACCGAAGAAAAG
GCAGTATTACCAACCAAAGAAGGTGAGTTCACAATTAAActgtttatttt
tataatttaacaTCTTCAGGGCTAGAAATAACTGTCggacccaaatagct
tcatgtccgacccaaaaatcgtaattttcaagctaaagcaactctgatcg
gacattttgtccgacccacttgaaattgTTATTTCGAGCCATGCAGTCTG
TTTCTCAATGCTGGACTGCAGAGTAATTTTTAAGGTTTATAAAAATCAGT
TTGGTGCTAGAATGCTAAAACAATAGTAATACAGAATGTAAAACATCTTC
ATATTTTGCTTTTTAGTCATCGATGAAGAAAAACGTGAATCGAGGGCGGA
AGTCAAAGCTTTTGATAAATCTAACCTGAAAAAAGTAGAAACTGTCGAGA
AGAATTCACCACCAACTGCTGAGGGTAAAACTAGTGAAACTGTAcaatct
gaaaataagaaaccTGAAGTATCTTCTGAGGCAAGCAGCCCTTCAGAACC
AACACCCACTACTACCAATGAgagtgaaaataaaaagaaaggttgTACTA
TCCTATAACAAACACACACCAACACGTCATTCATAACGTCAAATCTTAAG
ACGTAAGTCCTTCCTACTGCTATACTGTTTCTCACTGCACACACTGACTC
CTTTTGCACCACACATACATTACAACACAAAACACACCCCCTATTTATGA
ATACCACAATGTTTTTCATGCTTGAACTACATTGAGTTTCATGCTCTTTT
TTGAATGCTTAGAATGTCATTTTCATcggaattttctttgaattgacTTG
CACTTTAAACACATTTATGATTTGAAGCTTGTCTCTACACTTACTAATac
ctttttctcatattttgaCAGTCTAAGCATGCCAGAGCGAGgggaatatt
tttaaatatttcttatttcaattttgttatgttttcacaacACTGACTGA
TAAAGACCCAAAATGTGTAATTGATTGATGCATGAGATCATTTCTTGATT
ACCACATTCAAACACGGGCCTAGAACATTTCTTCCTTCACTTTGCATTCA
GATTCGAGTTTCAATTATTGTATAATCAACATACATATTTAAAAATTAAC
ATACCAAACAACATAATAAAAAGAGGAAATCTGAATCCATTCATGATCAA
TTTAAAACGAAACAATCATTTAGATGTAGATACGTTCAATAGATTAAGCA
TAAACACTAGAAATATTTTAACCTAAATTCAAAACTAGAGCACGAAAtca
tttgatatgaaatttctGTATGACGAATCTCCAAGCCATGATGTTTGTAA
GTTATGATTTACTTTTCATTTCTCCTCACCATTCAATGCAAGCAACAAAA
TTGAGAATCATTCAAAAAGCAGTAGGAAAGGCTAACCACTACTCAaacct
ttcaaaacaaaatcgaaTAGCACCGTAACTTTTGACAACCcactttttat
ttattatatcaaaatagaTAGATTTACCCTGGAGTACATTCCAGAGTGGC
CTGCCTCATGCCAATTTTGCCTCTCTCTCATTCAGGCGGTGTTACCCAGT
ATGTCTTGGCCGTTGGCTTTGCTTTTGTTGCTTGGGTCTATTTCCAATAT
TTTCGATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059694-exon-scaffold_330-1491911889:309159..309385 | TCONS_00059694-exon-scaffold_330-1491911889:309159..309385 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1510915933:309159..309385 | TCONS_00059694-exon-scaffold_330-1510915933:309159..309385 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1575043694:309159..309385 | TCONS_00059694-exon-scaffold_330-1575043694:309159..309385 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1491911889:311535..313130 | TCONS_00059694-exon-scaffold_330-1491911889:311535..313130 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1510915933:311535..313130 | TCONS_00059694-exon-scaffold_330-1510915933:311535..313130 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1575043694:311535..313130 | TCONS_00059694-exon-scaffold_330-1575043694:311535..313130 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1491911889:313425..313532 | TCONS_00059694-exon-scaffold_330-1491911889:313425..313532 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1510915933:313425..313532 | TCONS_00059694-exon-scaffold_330-1510915933:313425..313532 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1575043694:313425..313532 | TCONS_00059694-exon-scaffold_330-1575043694:313425..313532 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1491911889:314644..314718 | TCONS_00059694-exon-scaffold_330-1491911889:314644..314718 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1510915933:314644..314718 | TCONS_00059694-exon-scaffold_330-1510915933:314644..314718 | Clytia hemisphaerica | exon |
| TCONS_00059694-exon-scaffold_330-1575043694:314644..314718 | TCONS_00059694-exon-scaffold_330-1575043694:314644..314718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:309159..314718 + |
Blast
The following BLAST results are available for this feature:
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