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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059670 ID=TCONS_00059670|Name=TCONS_00059670|organism=Clytia hemisphaerica|type=transcript|length=3958bpRun BLAST on NCBI protein sequence of TCONS_00059670-protein >TCONS_00059670-protein ID=TCONS_00059670-protein|Name=TCONS_00059670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp MEVEEHHPKPRRRMKQVLNDIKETVEFYFSDANLRRDRFFRKEIDQSEDGRun BLAST on NCBI transcript from alignment at scaffold_330:164835..173639+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059670 ID=TCONS_00059670|Name=TCONS_00059670|organism=Clytia hemisphaerica|type=transcript|length=8805bp|location=Sequence derived from alignment at scaffold_330:164835..173639+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:164835..173639+ >TCONS_00059670 ID=TCONS_00059670|Name=TCONS_00059670|organism=Clytia hemisphaerica|type=CDS|length=20376bp|location=Sequence derived from alignment at scaffold_330:164835..173639+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059670 vs. Swiss-Prot (Human)
Match: MUL1 (Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Homo sapiens GN=MUL1 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 7.678e-33 Identity = 95/329 (28.88%), Postives = 158/329 (48.02%), Query Frame = 2
Query: 2822 VGSFFYWNYHEKANLVNQLQSMPRYVPDQKLYDDVSRS-NNFISYAAITGNAQADDKHLYGLRRTSMKGLISHNYVVEHTEELHESSNKWNKDKRSISNQWSFVPFSLC--RSGSKIRVSVQKPLEA-ELNLTTVYDKYRPSKATAADKVVDFLFSNKHVVGVQSIEKMLLPDTQLTAIGQVVLHDGHIRIEPSDQGLRYYLTSDSIESLVRSEESVGFIVKVVAGVFLGIGGVLCGKWLYDYYKSY-----------------QXXXXXXXXXXXNNTNIGEDKCVICLVKPKNIVLIPCGHVCACKKC---LEQLDKCPMCRRPIER 3736
V + Y Y +KA + +L+ + + L +S + + YA I G ++ + L + KG+I + EH + +++ WN + I + + VPF L G + V V KPL++ +L L TVY+K+ PS + D V+ S + G+Q E+ML LT +G++VL + +R++P QG++YYL+S +SL++ +ES + KV+A VF G C + K Y + E + + + CV+CL K+ V + CGHVC+C +C L + KCP+CR+ I R
Sbjct: 21 VTAALYSVYRQKARVSQELKGAKKVHLGEDLKSILSEAPGKCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQRTNTVPFDLVPHEDGVDVAVRVLKPLDSVDLGLETVYEKFHPSIQSFTD-VIGHYISGERPKGIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLWKVLALVF---GFATCATLFFILRKQYLQRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITR 345 The following BLAST results are available for this feature:
BLAST of TCONS_00059670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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