TCONS_00059658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059658
Unique NameTCONS_00059658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059658 ID=TCONS_00059658|Name=TCONS_00059658|organism=Clytia hemisphaerica|type=transcript|length=237bp
CACAGGTATTTTATATGAATCTTTCTCACCCATGAAATGTCGTAACAAAA
CGATCGAAGACCTTGCAACCACACGCTTCCCGTACTTCAAAAACAAACAT
CATTGGGTTCACGCCAGGGAAGCTTTCCTTCACCTCAAAGAATTTAAAGA
TAAGTTCAAATATGAAGGCGAACGTTTCGTGCGCGGCGTTCCGTGTGATG
TATGGATCTACAGAAGTGATCAATTGGGAGAGGTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_33:20699..20935

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059658 ID=TCONS_00059658|Name=TCONS_00059658|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at scaffold_33:20699..20935 (Clytia hemisphaerica)
CTTACCTCTCCCAATTGATCACTTCTGTAGATCCATACATCACACGGAAC
GCCGCGCACGAAACGTTCGCCTTCATATTTGAACTTATCTTTAAATTCTT
TGAGGTGAAGGAAAGCTTCCCTGGCGTGAACCCAATGATGTTTGTTTTTG
AAGTACGGGAAGCGTGTGGTTGCAAGGTCTTCGATCGTTTTGTTACGACA
TTTCATGGGTGAGAAAGATTCATATAAAATACCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037538XLOC_037538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059658-exon-scaffold_33-1491911889:20699..20935TCONS_00059658-exon-scaffold_33-1491911889:20699..20935Clytia hemisphaericaexon
TCONS_00059658-exon-scaffold_33-1510915933:20699..20935TCONS_00059658-exon-scaffold_33-1510915933:20699..20935Clytia hemisphaericaexon
TCONS_00059658-exon-scaffold_33-1575043694:20699..20935TCONS_00059658-exon-scaffold_33-1575043694:20699..20935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:20699..20935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.386	52.492	20.7931	14.0812	7.63778	3.01774	13.3495	30.676	20.0679	32.7915	17.3274	27.474	93.3193	56.5132	12.8641	25.1814	19.3964	12.3473	52.4829	63.2387	13.1053	17.3768	35.863	43.1155	66.8892	61.2155	34.5225	64.4117	6.8898	9.16971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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