TCONS_00059619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059619
Unique NameTCONS_00059619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length890

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059619 ID=TCONS_00059619|Name=TCONS_00059619|organism=Clytia hemisphaerica|type=transcript|length=890bp
tagatattttaaacCACACATAATAAACATATAAAGCATGGCAAAAAGAA
AgAGCACTGAAGGTGAACAGGCAGCCagtaaaaagtccaaaaaagaagat
gaaaaggTTGATGAAGTTgaGAAAGAAAACGATCAAAAGGAAAACTTTTC
TCTTGTTACAAAAACTAAAGATGGAAGGGATTCAAATTTGAAGATTTGTA
GTTGGAATGTAGCAGGACTGAGAGCATGTCTAAAGAAAGCTGGTCTTGAT
TACATTAAGGAAGAAGACGCTGATATAGTTTGTTTACAAGAAACCAAAGT
CACAGAAAAAGAAATCCCTGGAGAGGTTACTCAATTGGACAAGAAAGTGC
CATCTATACTACCAAAGAAAGACGGATATTACATGTATTGGTATGAGGCT
GAGAAAAAAGGATATAGTGGTGTCAGTTTATGGTCAAAAACAAAGCCAGT
CAGCATAAAGAATGGAATGGGTAAAGAGGAACATGATAATGAAGGACGTC
TGATTACTGCTGAATTTGATAAATACTATGTTGTAACATCATATGTGCCA
AACTCTGGAAAGAAGCTAGTGAGGTGTTTAATTAATATCATAGTGTCCTG
TAATAAGCTGTATCTCTAAAACAGAATTTTTAAGTTACAGCTATAGGTCG
ACAGGTTCCAGGTTACGGGTTGGAAAATTATACATGGGTTAACTGACCAG
ATATAAGATATCTTGGGCTGGCAATTATGCTGTTAAAGTATTTTTCAGCA
ATTTTTAGAGAAGGCATAACCACTCACCTCCTTTTTTGTGGTATGCATGT
GTTAAGTTTGTTTTAGGGCGTTTACAGTCCTGTCAACTGCTTTTGCCCAT
TGAGGATTCAACTATTTCACATGTTTGTCCCTGTGTCCAG
Run BLAST on NCBI

transcript from alignment at scaffold_329:754090..756885-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059619 ID=TCONS_00059619|Name=TCONS_00059619|organism=Clytia hemisphaerica|type=transcript|length=2796bp|location=Sequence derived from alignment at scaffold_329:754090..756885- (Clytia hemisphaerica)
TAGATATTTTAAACCACACATAATAAACATATAAAGCATGGCAAAAAGAA
AGGTAATTTATTTTCTTATCTTAACAAAACATTTTTTATTTAGAAAACCA
TGTCATTAAGAATAAAAAATGCTTGCTACATAACATTTCAAAACAGAACA
AGGATAAATTCAATTCATCTTCTATTATACCAAAATGTCTTCTCTCGACA
GAGCACTGAAGGTGAACAGGCAGCCAGTAAAAAGTCCAAAAAAGAAGATG
AAAAGGTTGATGAAGTTGTAAGTAGTTGACTCATATTTATGATTAAACCT
TACCAGGTGTGCCATAAGAAAATCCTGTGTTTACATAATATAAGAACTTT
CTATGGATCCTTTTTATTGCAAAAACTTGAACTTGAAATTTAAAATCGCC
TCAATCATTCAAAAGTTATGTTAAAAAAACTTCTGACCTTCCCAAAAATC
TCAAAGTTCATTAAAAACAATAGTAGTAGGTCTTTAGATCTTCAACTTAG
ACTGCTGAACATGGTTCTTATTGGTAATATTCTAAAAGTCAATCTTCAAT
TTTTTAGGAGAAAGAAAACGATCAAAAGGAAAACTTTTCTCTTGTTACAA
AAACTAAAGATGGAAGGTATGTACTTATATAAATCATCTTCTAAGCATTA
CCTCCTAAAATTTTGCAATGTTTATAACTATGCTATTTTTGTGTGAAACA
TTAAAAAGAACGTTTGTTGTTGCCCTGATGATCTTTATTCGTCATTTAGT
ATAAAGAATATTTTTTATCGTCTTAAATTTCATATCTTTTAATTGTCTGA
CAGGGATTCAAATTTGAAGATTTGTAGTTGGAATGTAGCAGGACTGAGAG
CATGTCTAAAGGTACTTTAAATGTCATGTGAATTTTTACAAATTATTTGA
GTTTTGAAGTAATTTCGCTGTAAGATCTTCCTCATTCTTTAGCTTTCTGT
TACCTGGATATACAGGTTAGTCTAAGTAAAAGTACCGTGTCAGACAATTT
GAGTAGAAAATATGTTTATCTTTTTCTATTTCTTCTTTTAAAAAATTCAC
TAGCAATCCAAACTGTAATTATTTACAAATCACAAGAATGCAATAATGGC
ACACAAAGAAAAAAAACTGTAAACGTTATCAATTTAATAAAAGACACAGA
GGAAAAAGGTGCCTTGAAACTGTTGTTGTTACCTACCTTGTTGTTAGATA
AATCTTCCATGATTTTATTTTACAGAAAGCTGGTCTTGATTACATTAAGG
AAGAAGACGCTGATATAGTTTGTTTACAAGAAACCAAAGTCACAGAAAAA
GAAATCCCTGGAGAGGTATAATAGGTTTCAAATATTATATAGAAGTTGTT
GATAAATCTTTCATGATTAAAGGTTTTAAGTCGGAATACCTTTCTTGTTC
GGGAGGCCATTTTTTAAGATAATGGGCATTGCTTTGCAGCATACCTTGAG
AGAAGGAGTTTTTAGTTTTAATTTTAGCGGATACAGTAGTAATGAATTTT
GCAAGTTTTCAAAGCAATTCACCAAAATTTCTTCCATTAGGGTAACTTCT
CCTCTTTTCTATTTTGCCAAAATTAAAAAAAAAAACTTTCTAATTAGGTG
TCATTTTCTAACCTTCTTCTTTTAAGGTTACTCAATTGGACAAGAAAGTG
CCATCTATACTACCAAAGAAAGACGGATATTACATGTATTGGTATGAGGC
TGAGAAAAAAGGATATAGTGGTGTCAGGTATTGTTTTCAATGAAAATTAC
TCCTAGATCAGATCTCCTCACGAACATGATAAATTGTCCTCAGTTAAATT
GGTTTAGATGCTTCAATCCTCACATCTGTTATCAGCATTATACCTACGTC
GATAATAAATGTTTTGAAATATTGTCTTTTTTTTGGGATTTTTGATCAAT
TTAAGGACCATTTTATTCTAAGAATGTCATGCCTAAGTTAGATTTAAATG
CTGTGAAACATTCTACATTGAAATTATTATTTCACACTTCAGTTTATGGT
CAAAAACAAAGCCAGTCAGCATAAAGAATGGAATGGGTAAAGAGGAACAT
GATAATGAAGGACGTCTGATTACTGCTGAATTTGATAAATACTATGTTGT
AACATCATGTAAGTGTTTTTTCACCGTTATGAGCCTTCGTTTCAACTGAT
ATGAGCCTCATGTTGAGGAATCATGACTAATGATTTTATCATTGCTTGGC
CAAACAAGATTTCATTTAATTTTTATATGTCCCTGCTCAGAAACGGAACA
AATTTGAATTTTAATAAACGGCCGTTTATACCAATGGAGGTCCTTTTAAG
GTCCGGTGGTTATAAAGATACAGAAAGGTTTACAAACAGGGGATGTGCTT
TTTAGGCAACTGAGAATAATTCAGTACATCCTGCGTCAGAATCATAAAAT
TTGTGACTTATTGATTGCTTGTAAAAATGTTTTTGTATTTCTCTTTAGAT
GTGCCAAACTCTGGAAAGAAGCTAGTGAGGTGTTTAATTAATATCATAGT
GTCCTGTAATAAGCTGTATCTCTAAAACAGAATTTTTAAGTTACAGCTAT
AGGTCGACAGGTTCCAGGTTACGGGTTGGAAAATTATACATGGGTTAACT
GACCAGATATAAGATATCTTGGGCTGGCAATTATGCTGTTAAAGTATTTT
TCAGCAATTTTTAGAGAAGGCATAACCACTCACCTCCTTTTTTGTGGTAT
GCATGTGTTAAGTTTGTTTTAGGGCGTTTACAGTCCTGTCAACTGCTTTT
GCCCATTGAGGATTCAACTATTTCACATGTTTGTCCCTGTGTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037500XLOC_037500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059619-exon-scaffold_329-1575043694:756834..756885TCONS_00059619-exon-scaffold_329-1575043694:756834..756885Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:756619..756684TCONS_00059619-exon-scaffold_329-1575043694:756619..756684Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:756270..756328TCONS_00059619-exon-scaffold_329-1575043694:756270..756328Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:756025..756082TCONS_00059619-exon-scaffold_329-1575043694:756025..756082Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:755571..755660TCONS_00059619-exon-scaffold_329-1575043694:755571..755660Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:755159..755259TCONS_00059619-exon-scaffold_329-1575043694:755159..755259Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:754778..754893TCONS_00059619-exon-scaffold_329-1575043694:754778..754893Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1575043694:754090..754437TCONS_00059619-exon-scaffold_329-1575043694:754090..754437Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:756834..756885TCONS_00059619-exon-scaffold_329-1510915933:756834..756885Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:756619..756684TCONS_00059619-exon-scaffold_329-1510915933:756619..756684Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:756270..756328TCONS_00059619-exon-scaffold_329-1510915933:756270..756328Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:756025..756082TCONS_00059619-exon-scaffold_329-1510915933:756025..756082Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:755571..755660TCONS_00059619-exon-scaffold_329-1510915933:755571..755660Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:755159..755259TCONS_00059619-exon-scaffold_329-1510915933:755159..755259Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:754778..754893TCONS_00059619-exon-scaffold_329-1510915933:754778..754893Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1510915933:754090..754437TCONS_00059619-exon-scaffold_329-1510915933:754090..754437Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:756834..756885TCONS_00059619-exon-scaffold_329-1491911889:756834..756885Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:756619..756684TCONS_00059619-exon-scaffold_329-1491911889:756619..756684Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:756270..756328TCONS_00059619-exon-scaffold_329-1491911889:756270..756328Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:756025..756082TCONS_00059619-exon-scaffold_329-1491911889:756025..756082Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:755571..755660TCONS_00059619-exon-scaffold_329-1491911889:755571..755660Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:755159..755259TCONS_00059619-exon-scaffold_329-1491911889:755159..755259Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:754778..754893TCONS_00059619-exon-scaffold_329-1491911889:754778..754893Clytia hemisphaericaexon
TCONS_00059619-exon-scaffold_329-1491911889:754090..754437TCONS_00059619-exon-scaffold_329-1491911889:754090..754437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:754090..756885 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6206	20.006	15.5107	16.5705	1.00305	2.45745	3.68325	4.73067	8.45088	3.69938	7.39	7.1403	8.88688	10.251	7.78662	7.80883	5.54452	11.2783	5.18146	5.61119	12.8612	12.1294	12.0105	11.1916	10.7043	4.74963	5.35333	3.67206	6.52306	6.23456
Blast
[Close]
BLAST of TCONS_00059619 vs. Swiss-Prot (Human)
Match: APEX1 (DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 2.297e-38
Identity = 69/138 (50.00%), Postives = 96/138 (69.57%), Query Frame = 2 
Query:  164 TKDGRDSNLKICSWNVAGLRACLKKAGLDYIKEEDADIVCLQETKVTEKEIPGEVTQLDKKVPSILPKKDGYYMYW-YEAEKKGYSGVSLWSKTKPVSIKNGMGKEEHDNEGRLITAEFDKYYVVTSYVPNSGKKLVR 574
            +  G+ + LKICSWNV GLRA +KK GLD++KEE  DI+CLQETK +E ++P E+ +L    P +       + YW   ++K+GYSGV L S+  P+ +  G+G EEHD EGR+I AEFD + +VT+YVPN+G+ LVR
Sbjct:   54 SPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL----PGL------SHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
The following BLAST results are available for this feature:
BLAST of TCONS_00059619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APEX12.297e-3850.00DNA-(apurinic or apyrimidinic site) lyase OS=Homo ... [more]
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