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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005917 ID=TCONS_00005917|Name=TCONS_00005917|organism=Clytia hemisphaerica|type=transcript|length=625bp
TTTTGAGAATATACGATAGAAATATTACCAACCTTGATAGGCAGGTCTTG
TCCCGTCAGCAATTCCACAAAGAAGTCGTCCTAGTATCGGGAACCAGTTC
AAATATGGGAAAATATACAGCAAATTACCAATCACGTTAAAATTTGAGAT
GTACAAGACAACGATTCGTAAGTTACGGTACCGATCAACAAGCTTTCCAA
TCAAAGTGGATGAAATCATTGATGCAAATTGTAAAGCAGCCATTGATAAT
GAATAATATAATTTAGGATTGGAAACTTTTAATATGtcttgaaaataata
taaagctGAAATACTGATAGCTGAATATTCGAATGAAAACAATCCTTCTA
AAATGACCAATATAATGAAattatactttcgttttcggtaCCAGTTTTCA
AGACACGTTTTCTCTGATGACGATAATCCACTCGAATCCATTCTTCTCTA
ATATTGAAAATTCCCTATTTCATATGATTTATAATTCCTTCCTTGAGAGA
AAGAACCAAAGTTTATTAATCAGTCTTTGGATATGTTAAATGTAAAATTT
TGTCCTGTCCACGTTGTTTTAgaactaaaaacaaaaattaagagatctaa
aacggcaattttttgacaactttca Run BLAST on NCBI transcript from alignment at sc0000061:401323..403756- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005917 ID=TCONS_00005917|Name=TCONS_00005917|organism=Clytia hemisphaerica|type=transcript|length=2434bp|location=Sequence derived from alignment at sc0000061:401323..403756- (Clytia hemisphaerica)
TTTTGAGAATATACGATAGAAATATTACCAACCTTGATAGGCAGGTCTTG
TCCCGTCAGCAATTCCACAAAGAAGTCGTCCTAGTATCGGGAACCAGTTC
AAATATGGGAAAATATACAGCAAATTACCAATCACGTTAAAATTTGAGAT
GTACAAGACAACGATTCGTAAGTTACGGTACCGATCAACAAGCTTTCCAA
TCAAAGTGGATGAAATCATTGATGCAAATTGTAAAGCAGCCATTGATAAT
GAATAATATAATTTAGGATTGGAAACTTTTAATATGTCTTGAAAATAATA
TAAAGCTGAAATACTGATAGCTGAATATTCGAATGAAAACAATCCTTCTA
AAATGACCAATATAATGAAATTATACTTTCGTTTTCGGTACCAGTTTTCA
AGACACGTTTTCTCTGATGACGATAATCCACTCGAATCCATTCTTCTCTA
ATATTGAAAATTCCCTATTTCATATGATTTATAATTCCTTCCTTGAGAGA
AAGAACCAAAGTTTATTAATCAGTCTTTGGATATGTTAAATGTAAAATTT
TGTCCTGTCCACGTTGTTTTAGAACTAAAAACAAAAATTAAGAGATCTAA
AACGGCAATTTTTGAAAACTTTCATAGCTCTTCAAGAGTACAAGAAGTTC
AAGTTCCGCACTGTTACCATCCCTGCTTCATCGTTTGCAAATAAGCGAAG
AGATTTCTCTTATCCTGCTCTTTAAAACAAAGTTTAATAACAAATAAGTT
GATGCAAACAGCTTGCAAAATTCGAGACTTAAGTATTATAATCAGCTTTT
CATTAGATCAAAAATATGACACACGCCTTTTTATTCCTATAAGAACAAAG
TACATAAGACAGTGGTCAAAGCAAAGTCTTTCGTCTGAGACGGAAAATGG
ATTTTACACAGCAAATTAGCACATTATCTTGAGATTTTGGTGAATTATGC
AGAGTTTTGAGTCGAAATTTGCTTTTTAAAACTTCTCTGAGACGGAAATC
CGTCTGAGACGGAAGAACTTTTAACACTGATAAGAACGCGAGGCTTATCT
TGGACTTTTGGATCCTCAGATCCTAAAACTCAGAGTTTAAACTCTACCCT
TCCAACCTAATTTAGAGCGCTTCCAAATCGTTTGTGGCTGTAAGATTTCG
TGGGAATTTCCCTTTTTCCTCAAATATTACTCTTGTTGTACCTTTTGTTG
TACCTCCCTCCCCTGTGTTTTCTATAGACGGTTCAGATCTTGAGGTAGTA
CCCACATTCTGTTACCTAGGTGATATGATTGGGGACAATGGAGGCTGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCT
GACAAACGATCGCATTGCATGGCGTACGGCCATCAAGAGAGGAAGGCGTC
CAACCCCAGCTGCTGGGAACAACGGACGTTAAACCGTGCAGTAAGTAAGT
AAGTAAGTCTCCCGAATAGACGTCCCCCCCGCTAATTGTTAAGAGACAAA
AAAATCCAACCCCCGCTCTTATTAGGACCCCCCCGCTAATTAAATTCGAA
TAATTCAATATTTTATTACAGTATTACCTTAAACTTGTTAAAATTTTCCT
TTTTGTTAGTATTGGTTCTTATTTTACGTGTTTATTTGTTAAAGTTTCTT
TTTTATTTGTTGTTGAAATTGATACCAGTTAGAAAAAAATCTGTCCTCAA
ACTACCACCCCCCTCTTATTCCATCCCCCCCCCCGCTTATTAGAATTTAG
ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AATATTATGACTTTGATTGTACGTTAAATGCAACATTTTCCATTTTTTCC
TGTCCACGTTGTTTTGTCTTTTAGAATTAAAAACAAAACTTAAGAGATCT
AAAAGGTAAAAAGGCAATTTTTTGACAACTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005917-exon-sc0000061-1575043694:403153..403756 | TCONS_00005917-exon-sc0000061-1575043694:403153..403756 | Clytia hemisphaerica | exon |
| TCONS_00005917-exon-sc0000061-1575043694:401323..401343 | TCONS_00005917-exon-sc0000061-1575043694:401323..401343 | Clytia hemisphaerica | exon |
| TCONS_00005917-exon-sc0000061-1510915933:403153..403756 | TCONS_00005917-exon-sc0000061-1510915933:403153..403756 | Clytia hemisphaerica | exon |
| TCONS_00005917-exon-sc0000061-1510915933:401323..401343 | TCONS_00005917-exon-sc0000061-1510915933:401323..401343 | Clytia hemisphaerica | exon |
| TCONS_00005917-exon-sc0000061-1491911889:403153..403756 | TCONS_00005917-exon-sc0000061-1491911889:403153..403756 | Clytia hemisphaerica | exon |
| TCONS_00005917-exon-sc0000061-1491911889:401323..401343 | TCONS_00005917-exon-sc0000061-1491911889:401323..401343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:401323..403756 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0022857 |
transmembrane transporter activity |
Blast
The following BLAST results are available for this feature:
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