TCONS_00059503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059503
Unique NameTCONS_00059503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059503 ID=TCONS_00059503|Name=TCONS_00059503|organism=Clytia hemisphaerica|type=transcript|length=1236bp
cccccactATATATACAGCGTAACCATTTTGTGGTAATATTACAGGAATA
CGTAGTGACGTAACTCTCCCTTTATTGTTTCAGGTACGGTCGATCCAGCA
CCGACAAGTCTTCACGATTCACTTGTGTTCCCTTCAACTGCAAATGATTT
CACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACAAGACTTGAAAG
CCTTACAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTGTACGTAGTCCA
CTTTATGGTAAAGATCAATCGTGTAAGAATAATAATCGAATCGCTGGACT
TACCAAATTGTTTGATGCATGGGCACACATGGCAAAATTGTtcaacattc
aatattttttgacatATGGATCGTTAATCGGAGCGGAGAGAGATCGTAAC
ATCATCCCGTATGATTTAGACACTGACATTATGATGCCAGAAGATGACGT
GccaaaactccaaaaaatgATAGATGATAATTTCTCAGTCGGTGATAACA
AAATCCATCTTCGGATCCATCCAGAATATAAGACACATTGGCGAAAACGT
ACCAAAATTTGTTGTAATGGCAAAGTCAGCCGTGGATCAAACAGTAACAC
GTGCTGGGATCAATGTGCAGTACCCAATCCTCTAGGTCGTCTCATACTTG
GCCCAGTACTGCATATAGGAATTACAGGTTACAAAGTGATTAAGAATCAT
ACCGTTTTGAAAATGACTTGTCATGAAGAATATGGTTTTAAAACTGAGTA
TAAGTGGAAAGATTTAGCACCTCGGGATTGTGAATTTCTTGGACATAAGA
CATACTGTCCAACAAATGCCAATTTGATAAACACGGAAGTCTATGGTGAA
TATTGGACAGATCCCCATAAGAAATGCAAAAATGGAATTTGGACTAAAAC
AAGCAGACCACAAAAGaatttctaactgatattttatTGGAATTTACTTT
TATGAAATAATGTGAGCCATCCCCACtggggaatgggtcctactccttac
gaagtaggaattcctcctttttcaagtTGGAACGCTTAGCACGCAAAACA
CAGATACCATGATGAATAGTGGTGACACTCGAACTACGCGGGAGAGCATA
TAGCTCGTCGCAGGCGCAAAacaaaaatatcgataattttcaatatttaa
accaaaatatctcgagatttagacatcgaaagttaacaaaccataccatt
tttggatactactaattcagggctatccagttgtgg
Run BLAST on NCBI

transcript from alignment at scaffold_329:148469..154399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059503 ID=TCONS_00059503|Name=TCONS_00059503|organism=Clytia hemisphaerica|type=transcript|length=5931bp|location=Sequence derived from alignment at scaffold_329:148469..154399+ (Clytia hemisphaerica)
cccccactATATATACAGCGTAACCATTTTGTGGTAATATTACAGGAATA
CGTAGTGACGTAACTCTCCCTTTATTGTTTCAGGTACGGTCGATCCAGCA
CCGACAAGTCTTCACGATTCACTTGTGTTCCCTTCAACTGCAAATGATTT
CACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACAAGACTTGAAAG
CCTTACAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTGTACGTAGTCCA
CTTTATGGTAAAGATCAATCGTGTAAGAATAATAATCGAATCGCTGGACT
TACCAAATTGTTTGATGCATGGGCACACATGGCAAAATTGTtcaacattc
aatattttttgacatATGGATCGTTAATCGGAGCGGAGAGAGATCGTaag
ttcaaaaaatttcttttaaaacctCTTAACCTGGACTGAAAATATTTGGT
GCGATATCATGATTTTAAAACCAATCTTCGTTCACTTTTTCATCTTAATT
TTTCGATATATCTAACAAAATTAGCAGTTCAGATAATGCCACCCAGATGA
AAATACCTTTTCTAAAGGTCTTGCGcccacttgaaaaaaaatttcttcaa
tttcctAAACTTTATTGCAAATAGCAAAACTCGTCTCAgagaaatctcaa
aaaaccatTTCTGTCACTGTAATAAAAggtaaaaaacattttctgcaact
GTTTCTGTCTAAACAGAAActattgattaattttttgaaacattttttgt
tttagaaaaaCTATATGCTTTCTTTCCATCATTtgagcgggggggggggg
cccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGtca
ctacaatcagtgccataatatattggcacttttggctaatttaccatttt
tcgaaaattgaagttcgaccgagactgtcaatttttaggccttcaacttg
atttcatcgatcatttcgatctgggagggatttattatTTATCGaggtgc
caagtattttgtcactgattgtagcaatttttcatcaaagtgaaactttt
tgcgtttttcagttttcaaatatttctatttgatgaaaaatgtttcaagt
ggCCCCAGACCTTAAAAAGTAAAGTGTCTATCAGTAGAGTAGTGGGTCGA
CAAAAATTTGGGTGAACTGGGGAGGCAAATTTGGAATATTATGACTTTGG
CACCCCGCCCCCTATGAAATACTTTGGGCTCTGACCatcatagtgaattt
ttaatatttgccacgtaaaaaatatgaatttctacttgatgtagcacgCA
AAACTGTGGCATATTATACATTTtatgttaggccaattatccttgagtct
gaaaatttgaaattgataaacaataaaatgaagatttttacgAAGAAggg
tatttcaactttgaagagcttagtttcggcgaagaaaaaacattttgaaa
atttttttacggTAGATGGTGTAACCtttaccgaactaaaaatagatttt
cggaaaattttctcaaatcttaTTTGTcttaatttggaaaaaatttacga
aaaatttaaaacagttcaattctttgcgtaCAGgcaaattctttgttaaa
agttttaaagaaactAAAACATGGCTAAAACcaatttttcgactatggtA
AGAGCCCTTaagagcagaaacttttgcgggcagaaactttcacgatgtta
caaaatcgtgaaattgCACGAacttaactttcgcgaattttactTTTGGA
ACGAGTTCTGCGGATATAACTTTTAGAATATCATTTCATTTTGCAGGTAA
AAAAGCATAAAATAGCAACAAAAGTGTATCTTTTGCGGAAAAGACTTTGG
CGAATTTCTCGTGAAATTTCTTACTTggcagaaattttcgcggaaaagga
cgaaaatcacgaaaatttctgcttgcgaaagtttctgcccttaaagtata
aATATCTCTGTAAAGGTTACGCGGGTAAAGCAAGCacgaaaattttgggg
tattttctctctttttggccgaaaactgccatttctaaggtgtaaaagag
aACAGGGCGCCGTAATTAGTAATCAGAGGAGTTCATTTTGGCGACCCCTC
AAAATAATCGGCCGCTTGCTTtgggtggggggggggcactgctCCCTGCC
ACCACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgcaaaaaatcgagatt
ccagtccaatatattgcgtgaagctatgaatgcctccTCAGTCGCTGCGC
TCCTTGCGGGGGCAATAATAACTGGCTAAAAGGTCAATGCAGGAAAATAT
TGACTGCAGCCGAAGTATTCATGCACCATTGTAATGTAtttcacggaccc
aacagccgattggttgcaagtgaggTATTGACTGATTTTGCGTTACTTAC
AACCAGTctgttgggtccatgatgtaatgttagagTACATTGCAATTGTG
CATATCATGATTAGACCACGAAACAACCAATACTAACAACGCATTTCACC
TGTTTTAGACCGCTTACATTATAACCAGTTAATGAAGCTTTGTATATATC
AATTATGGCAATATTGTTTTGATGATGACCGCGTTGAGAAAGTTcagacg
aaatttttgtcaaagaaaCTTCAAATGAGGCTCTATAGTCTTCAAAATAG
TTTGGCTGATATCTTAATGTAATTTCCATTATTACTACAGGTAACATCAT
CCCGTATGATTTAGACACTGACATTATGATGCCAGAAGATGACGTGccaa
aactccaaaaaatgATAGATGATAATTTCTCAGTCGGTGATAACAAAATC
CATCTTCGGATCCATCCAGAATATAAGACACATTGGCGAAAACGTACCAA
AATTTGTTGTAATGGCAAAGTCAGCCGTGGATCAAACAGTAACACGTGCT
GGGATCAATGTGCAGTACCCAATCCTCTAGGTCGTCTCATACTTGGCCCA
GTACTGCATATAGGAATTACAGGTTACAAAGTGATTAAGAATCATACCGT
TTTGAAAATGACTTGTCATGAAGAATATGGTTTTAAAACTGAGTATAAGT
GGAAAGATTTAGCACCTCGGGATTGTGAATTTCTTGGACATAAGACATAC
TGTCCAACAAATGCCAATTTGATAAACACGGAAGTCTATGGTGAATATTG
GACAGATCCCCATAAGAAATGCAAAAATGGAATTTGGACTAAAACAAGCA
GACCACAAAAGaatttctaactgatattttatTGGAATTTACTTTTATGA
AATAATGTGAGCCATCCCCACtggggaatgggtcctactccttacgaagt
aggaattcctcctttttcaagtTGGAACGCTTAGCACGCAAAACACAGAT
ACCATGATGAATAGTGGTGACACTCGAACTACGCGGGAGAGCATATAGCT
CGTCGCAGGCGCAAAacaaaaatatcgataattttcaatatttaaaccaa
aatatctcgagatttagacatcgaaagttaacaaaccataccatttttgg
atactactaattcagggctatccagttgtgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037459XLOC_037459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059503-exon-scaffold_329-1491911889:148469..148863TCONS_00059503-exon-scaffold_329-1491911889:148469..148863Clytia hemisphaericaexon
TCONS_00059503-exon-scaffold_329-1510915933:148469..148863TCONS_00059503-exon-scaffold_329-1510915933:148469..148863Clytia hemisphaericaexon
TCONS_00059503-exon-scaffold_329-1575043694:148469..148863TCONS_00059503-exon-scaffold_329-1575043694:148469..148863Clytia hemisphaericaexon
TCONS_00059503-exon-scaffold_329-1491911889:153559..154399TCONS_00059503-exon-scaffold_329-1491911889:153559..154399Clytia hemisphaericaexon
TCONS_00059503-exon-scaffold_329-1510915933:153559..154399TCONS_00059503-exon-scaffold_329-1510915933:153559..154399Clytia hemisphaericaexon
TCONS_00059503-exon-scaffold_329-1575043694:153559..154399TCONS_00059503-exon-scaffold_329-1575043694:153559..154399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:148469..154399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.685647	0.623008	0.937097	0.68502	16.902	11.6572	12.7124	14.0153	9.44413	11.5948	9.63895	7.71537	10.2084	9.02262	13.6974	11.7598	14.4871	12.5265	9.66343	9.81549	11.2662	12.167	5.03492	7.58473	6.36898	5.85977	16.8676	10.9943	8.87766	5.95159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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