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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059455 ID=TCONS_00059455|Name=TCONS_00059455|organism=Clytia hemisphaerica|type=transcript|length=1011bp
AACCATTCTGGTGAAATGGAGACCAAATCTGGCACAGGAATGTTTTGGAC
AGATAGAATGGTTTGGATGGTTGAAAAATGTCCACCCGAAAATAAATACC
ATTAAGCGCCTATCTCCAAGGGCCATGGCCCAGTATTacgtgaaaatgaa
agtggatCCTTcacattgttacaagaaatatATAGATGCATCAAAAGGAT
GGGGAGTATTCGctggaaaaaattttgagaagaaCGATTTCATCCTTGAG
TATCGTGGTCAATTGAGAAGCAAAACAGATATGGACCTACTGCAAAAACA
AAACTCAATCAAAGACACCTACCTATATGACTTTTTGTTCAATGGACCTA
AGTGGTAAGGAAATTTAAAGAATGCCTTAGCAAAACACAATAAGGGAGGG
GATATGTATGCAGCAGAATTTTGCTGAAAATGCCAAAACCTCAGGGTGcc
caccccctgcttattccatcACCCAACCATATTAAGAAagttttaaccaa
tcagatattctgctcaaaattatctttctaaGGATGTGTAAACTCTTTTT
ATGGAAAAATTAAGACTCAAAGTTTTCGCATTTTAGCTTGGTATGCTTAG
Cacatggctccgactggggttctagttccccccgccaaatttaggtcccc
cctgagaacaaggtccccccNATTGCAATTTGTTATTTCCTTGTgcatgg
ctccgactggggttctaggtccccccgccaaatttaggtcccccctgaga
acaaggtcccccagcctgataaaattttagggcCCAGTATaataggggaa
aaatttttgatgaataattttttttcaatgtgaaTTTTTACCATTTAGTC
AATGAAAACACAAGTAAATAAACAGTAAAGTAAATTAGTAGTAACTAAAC
ATTATACAACTTATGCACCCTTGAGTTCTTAATTGATCCTAAtttagaga
atgcaatagaatgtcttcatttttgcattctaaggatcagatcacacttc
gcatgaaaaca Run BLAST on NCBI transcript from alignment at scaffold_327:485818..487493- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059455 ID=TCONS_00059455|Name=TCONS_00059455|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at scaffold_327:485818..487493- (Clytia hemisphaerica)
AACCATTCTGGTGAAATGGAGACCAAATCTGGCACAGGAATGTTTTGGAC
AGATAGAATGGTTTGGATGGTTGAAAAATGTCCACCCGAAAATAAATACC
ATTAAGGTAGGTTGGATGGAGCATGTTGTATTGCAAAAACTTGAAAAAGC
TTTTGGTCTTTCCTTAAGGTTCCCAAAATTCATGACTCTATTTTGTTCTC
TTGTTGTAATAAAATCTTAAAATCTGCATACTCCTATGCTACAATATCTC
TACTGGATAAGTCAAACCTATTTCACTGAAATTTCAGTGATTTTCTAATA
CTAGTAACTTTTTTTGCAGCGCCTATCTCCAAGGGCCATGGCCCAGTATT
ACGTGAAAATGAAAGTGGATCCTTCACATTGTTACAAGAAATATATAGAT
GCATCAAAAGGTTAGATGGATTATCTATTAAAGGATTTGTCAGTACCAGG
AACATTACTTTAACCAGATTAATTTTCGCCATTTACGAATTTTTGCTATT
TTGGCGATTTTTTGCGAATTTTTGCCATTTTTGCAAAATTAAATCCTGCG
AAAACGTTCGGGATCGCTCATACATGAAATTAAATCGACACAAAATTTTT
GAAATGGCATTTTCAGCAAAAACTATGTCTACACTGTCAATATTTAGCAA
AAAAGACCATTTTGAAGACTATTCACAAAATTAAATCCACACGAAATTAA
ATCTTGCGAAATTTAATCCTATATTAAAGTATAATTTTTTGAAGTAGACC
ACCACTCCTTAGGGTTCTTTTCATATTGGAAAATCAGTGCAGTGCCAGTG
GTATTTGAAGAAAGCTAAGTCCATGTTCTTTAGATTTTTATACCATATCA
ATTCTTCTTAAGGATGGGGAGTATTCGCTGGAAAAAATTTTGAGAAGAAC
GATTTCATCCTTGAGTATCGTGGTCAATTGAGAAGCAAAACAGATATGGA
CCTACTGCAAAAACAAAACTCAATCAAAGACACCTACCTATATGACTTTT
TGTTCAATGGACCTAAGTGGTAAGGAAATTTAAAGAATGCCTTAGCAAAA
CACAATAAGGGAGGGGATATGTATGCAGCAGAATTTTGCTGAAAATGCCA
AAACCTCAGGGTGCCCACCCCCTGCTTATTCCATCACCCAACCATATTAA
GAAAGTTTTAACCAATCAGATATTCTGCTCAAAATTATCTTTCTAAGGAT
GTGTAAACTCTTTTTATGGAAAAATTAAGACTCAAAGTTTTCGCATTTTA
GCTTGGTATGCTTAGCACATGGCTCCGACTGGGGTTCTAGTTCCCCCCGC
CAAATTTAGGTCCCCCCTGAGAACAAGGTCCCCCCNATTGCAATTTGTTA
TTTCCTTGTGCATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCCAAATTT
AGGTCCCCCCTGAGAACAAGGTCCCCCAGCCTGATAAAATTTTAGGGCCC
AGTATAATAGGGGAAAAATTTTTGATGAATAATTTTTTTTCAATGTGAAT
TTTTACCATTTAGTCAATGAAAACACAAGTAAATAAACAGTAAAGTAAAT
TAGTAGTAACTAAACATTATACAACTTATGCACCCTTGAGTTCTTAATTG
ATCCTAATTTAGAGAATGCAATAGAATGTCTTCATTTTTGCATTCTAAGG
ATCAGATCACACTTCGCATGAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059455-exon-scaffold_327-1575043694:487388..487493 | TCONS_00059455-exon-scaffold_327-1575043694:487388..487493 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1575043694:487084..487174 | TCONS_00059455-exon-scaffold_327-1575043694:487084..487174 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1575043694:485818..486631 | TCONS_00059455-exon-scaffold_327-1575043694:485818..486631 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1510915933:487388..487493 | TCONS_00059455-exon-scaffold_327-1510915933:487388..487493 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1510915933:487084..487174 | TCONS_00059455-exon-scaffold_327-1510915933:487084..487174 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1510915933:485818..486631 | TCONS_00059455-exon-scaffold_327-1510915933:485818..486631 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1491911889:487388..487493 | TCONS_00059455-exon-scaffold_327-1491911889:487388..487493 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1491911889:487084..487174 | TCONS_00059455-exon-scaffold_327-1491911889:487084..487174 | Clytia hemisphaerica | exon |
| TCONS_00059455-exon-scaffold_327-1491911889:485818..486631 | TCONS_00059455-exon-scaffold_327-1491911889:485818..486631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:485818..487493 - |
Blast
The following BLAST results are available for this feature:
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