TCONS_00059451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059451
Unique NameTCONS_00059451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059451 ID=TCONS_00059451|Name=TCONS_00059451|organism=Clytia hemisphaerica|type=transcript|length=1705bp
TATTTTAGGATGTGAATCAGTACCCTTTGATAAATCAGCAGTCACCAACT
CAAGAAAACGAAAATCAACAACCAGTAGACTTGGAAATCCACATTGATCT
GGACAAGGACTTATCAAATAGAGATGATGAAAGTGACGTTTTCTTGCCAG
AAATCATATCCGAATCGAATCACCCGAAGGAAAAATCGTCCAAAGACGAA
CGGAATTGCAATCGAATAGAAGATAGTGATGATGAAGGTGGACATTGTGA
TGAAATACAACAAATACTCAAAATGGACAAAGCTGACATTGGGAATAAAA
ATGATATAGAAAATGCTTCTCGGAGAGCATCaaggaagaataaaaaaatc
agcTACGAAGGCATGGATTCGGACAATGCCTTGGAACCTTTAGGCGATCC
TGACTTAATACCCTCATTTGAAGATGACGAAGACAAAGATGACAAAAATG
AAAGAAGAGCAAATGAAGCATTGGAAAGAGCAATTGCAAGAATTGATAAA
TGGAACAGCCGCAAGAGACAGACCAGCCGCAAGAGACAGACCAGCCGCAA
GAGACAGACCAGCCGCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCC
GCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCCTAAGACAAAACAGC
CGAAAATTCATCGGCCCTGTCCATACTGTAGCGTGGGGCAGAGCGACTTA
ACTCGGCATCTAAAGCTAAAGCACAAGAACGAAACAGCTGTCATTAGTGC
AATGAAAAAAGGAAGGGTTGAACGCAATAAAGCCTTTGACTTACTGAAGA
AAGAAGGTATTTTCCAGCATAACCAAAAGCAAATGGAAAAGGAAAGCCCA
ACCTTTATGCGGGAAAGAAAGACAAAGAACGACGAAAAGGTGAAAGTTGA
GGTTTTAGTTGTTTGCGCCGCCTGTCATGGAACCTATTCAAAGACATACA
AAGCGAGACATCGACTGGAGTGCGGGAACACAAGTGGGCAGGTAATGATC
CCAATGATTCCTGCAAAAGATCTTGTCATCACCCATTATGCGGATGACTT
CAAGAAGGTGTTGGATAAAATGAAGATAGACGACGTTTCGTCTCTGGCCA
AAACCGATCCATATATCATGGTGGTTGGAGCAAGAATCTACAACGGAAAC
AAATGTAAAGACGAGAAAATACACGAAACTGAAAAACGCGTCCGCTCAGC
AATGCGTTTGCTGAGCCGTTTGTTAATTCAATTCAGAATCTCGTTTGGCG
AAGACAAAAACTTATCTTTCTTGTACAACAAAAATAATCTCAGTCACTTG
CGCTTCGCAATCGAGGTGCTGTCCGAAGGTGAAGCAGAAATGAAGTCTGG
GCTGAAGGTACAGATCCAAAACGTGATAAAGCAAGCAGGAAAAATCTTAG
AAGCGCATTTTTTAGTAGAAGGGGAGAGCCAACTTCCCGAAGATGTGTGT
GACTTCATCAAGGTTTTTCATCTTGTTGAAAATGAAATCTTCAACGGAGC
CCTctataaaatcaaacaaaaacgtAATAAATCCACAAGGAAGCCCGCCA
ATCTTCCTGACGAAGAGCTGGTGCAAGAACTCAGGAAATACTTACTAAAG
ACCATgctcaaagaaaattttatattcaAGTCTCCTGAGGATGTTTTTGT
GGAAGTTCGAGACTCTGCGTGTGCCAGACTGACCATGTTCAATGGGCGTC
GAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_327:456975..462311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059451 ID=TCONS_00059451|Name=TCONS_00059451|organism=Clytia hemisphaerica|type=transcript|length=5337bp|location=Sequence derived from alignment at scaffold_327:456975..462311- (Clytia hemisphaerica)
TATTTTAGGATGTGAATCAGTACCCTTTGATAAATCAGCAGTCACCAACT CAAGAAAACGAAAATCAACAACCAGTAGACTTGGAAATCCACATTGATCT GGACAAGGTGACAATGGTTTGTTTTTAACAGTGGTTAATGATAATTGCGG TTTGGTAGTTGATTCAGAGAATTTGACAAATGTCAATCCTTCTTTAACTT ATAATTCCCGGACGAGAGGAAATACTTAAATACTTAAATTTTTAGGATTC AAAATGAATCTAAGTCTATCTTAANCAATCCTTCTTTAACTTATAATTCC CGGACGAGAGGAAATACTTAAATACTTAAATTTTTAGGATTCAAAATGAA TCTAAGTCTATCTTAAGACTTAGCTTAAGGCTTAGCCAGCGCACCGCTTT TTGAAAAGTTGATTTATTTTGCAATTTTTTTCTTTGAAATCAAAAAACTT CAAAATGGGCTAAACGCTTGTAGCTTGAGAGTTAGACAATGGTTTTGGTA CCATTGAAAAGCAATTTTCATACTCTTTCTAAAAGCATTCGGTTTATGCC CCTTTAAAGCAAGTAGTCAGGAGCTATGACCAAAAGACACTGTATCAGTA AAACGTCCTTTTCAAACCGTATATCTACGTTATCCGCCGTCTAAGGGTTA AGAGAACTAATTTTCGCGCTTGACACCCACTTTAGGCTAAATTCTTTGAT TTTCCTACCGGGATATTTGAAATTTTAGAAAAAATTACATNAAAACGTCC TTTTCAAACCGTATATCTACGTTATCCGCCGTCTAAGGGTTAAGAGAACT AATTTTCGCGCTTGACACCCACTTTTGGCAAAATTCTTTGATTTTCCTAC CGGGATATTTGAAATTTTAGAAAAAATTACATTTTGAGGAACCTATATCA CTTAAGGAGGCCTAAGGAGGCCTCCAGAGGCCTAATTTTGCATTCATCCA TTGTTTGGAAATCCTTTATCGGAGACTATCAAAATTCTCATCTTTCATTC CCCATTTTTTAACATAAACCCAGGATGTCTACTGGACCTCGAAATAATTC TCATCCTTCATTCCCCATATTTTAATATAAACCAGGATGTCTGATGTCTG TCAAACATTTCAAATCTTGAAATTCCAACACCCTGTAGCGTGTTGTACAC ATTATAAATAGACTGGTGTAATATATTTAACTATTTTCCCTTTCAGGACT TATCAAATAGAGATGATGAAAGTGACGTTTTCTTGCCAGAAATCATATCC GAATCGGTACGTTCCCATTATAAATCGAAAAATTTAGTCAAACCAATCTT CATTGTTGGGAAATTCGTCCATTTAGGAACCAAATCTTTTTCTCACTAAA TATCCGCGTGTTCTTATTATAGAACAATGTAATCATGGTTTCAGCCCCCC CCTCTCCCAACGAAAGAGGTCCCCTTGAAAATTTGCCTTGAGCTAGGTAC CCCCAGTGACTTGAAATTTCTTTTGAATTCCAAGTTTCTGTTCTTTTGTT ATCTCTAAAATCTTCAAGATACTGTACGCTTTTCCAGTGTGAGAAGCGCT CACATGTATATACCCCTTTAAAAAAACTTTTTATTACGCTATGGAAAACT ACGCTTCATTCAAAACAAAACAAACAAAACAAACAAAAATTTGAGCAGAG TATATGAAAATAGAAAAGTGGAATAAAGAATTTCCTAATTTGGAAAATAT AGAGAAAGCCCACTGAGTTTCTATCAGATTAGTCACAGGTACCCCCCATA TAATTGCTATACTGTAGCCCCCTCCTAGAGATTGGACCTCGGTCACCTTT AGAAACCTGGGGGGGGGCTGAAACCGTGGTATTGCACCGCAAGAATCGTG TCCATTGAACAACGTTTTCTGGTTATATGGTAGATTATGTCCTCATTTTT TAAGAATCACCCGAAGGAAAAATCGTCCAAAGACGAACGGAATTGCAATC GAATAGAAGATAGTGATGATGAAGGTGGACATTGTGATGAAATACAACAA ATACTCAAAATGGACAAAGCTGACATTGGGAATAAAAGTAAGTAGTCACA ATTTTGATTTGAAAGCTCTGTTCAAAAATCATTTCGCCAAAGTTAGGTAA TGATATATTGAACTTGTAAAAAAAAATCTCTTCTACTATACTAATGGTAC TTACAGAACACTATAATAATATGCCTTTCTGTGTTACAGATGATATAGAA AATGCTTCTCGGAGAGCATCAAGGAAGAATAAAAAAATCAGCTACGAAGG CATGGATTCGGACAATGCCTTGGAACCTTTAGGCGATCCTGACTTAATAC GTAAGCTACGCAAATTTTACTACCATTGTTATACAGTAATGTTTTCAAAA TTAAAGCCGATGTTTTTTAAGGAGTGGTTCGGTTAAAAAATCATTTCTTT CTCAAGTATCCCCTCGTCGGATTCTCATTTTCAAAAGAGGAACAAAAATA TATACATTTATATAGCAAGTCTTGTTCATTTAAAACAAAGTTTTAAAAAT AATAAGAAATGGCTAAAAGAGCTCCAAGCCAAAATAATATTACATCGTNT AAAAATAATAAGAAATGGCTAAAAGAGCTCCAAGCCAAAATAATATTACA TCGTAGATGTTTGAAAAGTTTAGACTACCCAGTCTACAAGACTCTACTGG GGTTTTAATGTAAATCACTGTATAAATTGGCTTTTCTTCTAAAACNCGTA GATGTTTGAAAAGTTTAGACTACCCAGTCTACAAGGCTCTACTGGGGTTT TAATGTAAATCACTGTATAAATTGGCTTTTCTTCTAAAATAAGCTTTATT CGCATAAGGCCCTCGTGAAGTCACATACATTAAAGTTGCTCAAAATAGCA GGGTTCTTTCTGTAAAAAATGAGAATCGATTGGCTAAAATAAAATTTGAG AGCACTCGTGTTTTCAGTAGTAAAGTTTAAAAAAAATTAATTGAGTTAGA AACGCTGGACTCCTCATCATAAGATATTAAAAAAAACATTTTTAGCGAAC CATTCGTAATGTTGGATTTTTCATCTTTTATCTACCTTAAGGGAGCTAAT TTTCGCGGTCCGAACCAAACTGGTTCTTCAGGATTTCCAGAATTTCCCAA AGCTGTGTATTTAATGGCTTAAAAGCTACCAATGTTCAGAATTTAGATAA AAAAACTTTTGAGTGGTGCGGATGTGAAAACTACTTATTAGCGAAGTTTC GCAAGAGGCTATTTAGGATTTGAAATGTACCACTTGAACCTGTACATAAC CCGACCGACCAAAATCTTCATGTGTATAATTCTTAATGTACAGGAAGTCG TACATTTCAAGTCACTAAGGTTGGGCTGAACCCTTTACAGTCTGGTTGCT TATATAAAATGTGTATACTAAAAATGGCGATTTAAAAATATCAGTGGGCG TTACAGGAGAACTTTGCAACAGGGTATCACCATTTTCGAGCTTGCTTCTT ATATAAAATATTTAGTAGATTATTCTAAATCCGTTATAGCCTCATTTGAA GATGACGAAGACAAAGATGACAAAAATGAAAGAAGAGCAAATGAAGCATT GGAAAGAGCAATTGCAAGAATTGATGTAAGTTGAGAATCTCGATTAGTTT TGGGATGGATTCCAGAAAGAACACATTCAATACAACGACCTACAGAGTTT TTTTTGCTGAATATAGCAGTTTAAAAGATTCCGTATGGATTTAATTTCGA TCTCAGGTATTTTAGACCCTCTCTCCTCCCCCTTGTTTGCTTGGATAATG TATATGACGTCATAAAACACTAGCTGTTTGTCTCACCCCCTTGAGCGAAT GCTCCCTAAGCAACTTAAAAAAATTCAGCTCATTTCTGTCACAGGGCTTG TGTTGCTCAGCCAACTTGCAAATTATTTTGGTCATCTTCTTCAGGGTCAA ACGTCAGTCAATACGGAAAATATTGACCTTATCCTAACGAATATGTAAAA TTAGTCATTACCCAATAATTTTTTTTTTAATTATTAGGCTTTGTGTGCGC CGTTTGAACAATCCTCTCCTGTACGAGAAATCAGTATTTTAAACGATTCC GCCATCGGTTTGGGTGACAGTGTTGGTCAGATAATTGACACCGACAATGA ATCTGACGAAAACGATAATGTCATCTTAGAAATGGAACAGCCGCAAGAGA CAGACCAGCCGCAAGAGACAGACCAGCCGCAAGAGACAGACCAGCCGCAA GAGACAGAACAGCCGCAAGAGACAGAACAGCCGCAAGAGACAGAACAGCC GCAAGAGACAGAACAGCCTAAGACAAAACAGCCGAAAATTCATCGGCCCT GTCCATACTGTAGCGTGGGGCAGAGCGACTTAACTCGGCATCTAAAGCTA AAGCACAAGAACGAAACAGCTGTCATTAGTGCAATGAAAAAAGGAAGGGT TGAACGCAATAAAGCCTTTGACTTACTGAAGAAAGAAGGTATTTTCCAGC ATAACCAAAAGCAAATGGAAAAGGAAAGCCCAACCTTTATGCGGGAAAGA AAGACAAAGAACGACGAAAAGGTGAAAGTTGAGGTTTTAGTTGTTTGCGC CGCCTGTCATGGAACCTATTCAAAGACATACAAAGCGAGACATCGACTGG AGTGCGGGAACACAAGTGGGCAGGTAATGATCCCAATGATTCCTGCAAAA GATCTTGTCATCACCCATTATGCGGATGACTTCAAGAAGGTGTTGGATAA AATGAAGATAGACGACGTTTCGTCTCTGGCCAAAACCGATCCATATATCA TGGTGGTTGGAGCAAGAATCTACAACGGAAACAAATGTAAAGACGAGAAA ATACACGAAACTGAAAAACGCGTCCGCTCAGCAATGCGTTTGCTGAGCCG TTTGTTAATTCAATTCAGAATCTCGTTTGGCGAAGACAAAAACTTATCTT TCTTGTACAACAAAAATAATCTCAGTCACTTGCGCTTCGCAATCGAGGTG CTGTCCGAAGGTGAAGCAGAAATGAAGTCTGGGCTGAAGGTACAGATCCA AAACGTGATAAAGCAAGCAGGAAAAATCTTAGAAGCGCATTTTTTAGTAG AAGGGGAGAGCCAACTTCCCGAAGATGTGTGTGACTTCATCAAGGTTTTT CATCTTGTTGAAAATGAAATCTTCAACGGAGCCCTCTATAAAATCAAACA AAAACGTAATAAATCCACAAGGAAGCCCGCCAATCTTCCTGACGAAGAGC TGGTGCAAGAACTCAGGAAATACTTACTAAAGACCATGCTCAAAGAAAAT TTTATATTCAAGTCTCCTGAGGATGTTTTTGTGGAAGTTCGAGACTCTGC GTGTGCCAGACTGACCATGTTCAATGGGCGTCGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037418XLOC_037418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059451-exon-scaffold_327-1575043694:462205..462311TCONS_00059451-exon-scaffold_327-1575043694:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:461056..461115TCONS_00059451-exon-scaffold_327-1575043694:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:460275..460407TCONS_00059451-exon-scaffold_327-1575043694:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:460012..460122TCONS_00059451-exon-scaffold_327-1575043694:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:458737..458822TCONS_00059451-exon-scaffold_327-1575043694:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1575043694:456975..458182TCONS_00059451-exon-scaffold_327-1575043694:456975..458182Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:462205..462311TCONS_00059451-exon-scaffold_327-1510915933:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:461056..461115TCONS_00059451-exon-scaffold_327-1510915933:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:460275..460407TCONS_00059451-exon-scaffold_327-1510915933:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:460012..460122TCONS_00059451-exon-scaffold_327-1510915933:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:458737..458822TCONS_00059451-exon-scaffold_327-1510915933:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1510915933:456975..458182TCONS_00059451-exon-scaffold_327-1510915933:456975..458182Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:462205..462311TCONS_00059451-exon-scaffold_327-1491911889:462205..462311Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:461056..461115TCONS_00059451-exon-scaffold_327-1491911889:461056..461115Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:460275..460407TCONS_00059451-exon-scaffold_327-1491911889:460275..460407Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:460012..460122TCONS_00059451-exon-scaffold_327-1491911889:460012..460122Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:458737..458822TCONS_00059451-exon-scaffold_327-1491911889:458737..458822Clytia hemisphaericaexon
TCONS_00059451-exon-scaffold_327-1491911889:456975..458182TCONS_00059451-exon-scaffold_327-1491911889:456975..458182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:456975..462311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.183905 0.0268514 0.0788098 0 0.555982 0.000234618 0 0.664565 0.194472 0 0.938381 0 0 0 0.171061 0.354606 0.267777 0.00179925 1.66054e-07 0.206362 0 0 0 0.315373 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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