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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059423 ID=TCONS_00059423|Name=TCONS_00059423|organism=Clytia hemisphaerica|type=transcript|length=1273bp
ccgttttcccgtcaaaatttttgctgaaccctggaatcccgaaaattgaa
aaaagtaataacaccgtcacaccggcttaTACTGGTTCAAATACCGCCAT
AATGACAagataaggccaaataccgtcaccgtctgattttaaaataccgt
tttcccgtcctttttttcgtcaaatcccgtaataccgtactaaaaaaaaa
gggccaatcccgtcacaccgtaaaagtacaaaccccccccgACAAAGCCT
AACAGCCTGTAAGTTGAGAGCTGTTTCGCAAATTGCGAATCAAGCTTCAA
AATAGAGGAAGAATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGA
ATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGAAAATGCATTAGA
AAGAAGAATATGCATTAGAAAGAAGAATATGCATTAGAAGGAAGAAAATG
AACCACAATATTGAGTtaatgaaacttttttatttgtcTATTATCCCAGC
TACTACAAACATTTGGGTTTTGTCCCCAAGGTTGCATACTTGCGTCAGAT
TTGGTTCCCTCACGACCATAAAAATGTAAAACTACATGATTACCCCCTTC
TTACAAGCTAAGAAAGAATACTTCATCttccaaaactttaaaaaccAGGG
GGTATGATCTTTGAAAGGTCGTATCGTATATAAAAGGGCTTTAAAACTTT
TCTAAAATATCGATTAACGCAGTTGGCTAAATTCAGAACATAATACACAA
AGATAGCAATTGATAAAATGATCAAGTTACTCTTAATCTTTGCCCTTCTT
GGCCTAACATACGGGCAATGCTCAAGATTTCCACACTGGCCCAGTGAATT
TCGTTGGTCATATGCAGGAAATCTTGGTAATGGCTGGAAATGCACAAGAA
TTTTGGAACCATCAGATCCACACACATGGGCGGACAATTACTTTTGCGAG
CGAACAGGACCAGCCTACATTGCAAGCGGTATGAGATGGAGTTACGCTGG
TCCTATCTCTGGCATGAGATGCACACGAATCATCGAGTTCAGTTCACCAG
CCAAACACACATGGCGAGATAACTATCTATGCGTTCCACATCACAGCCCC
TTCGTTTTCGAATGGTCGATGGCTGGACCAATCCCTGGAAAACATTGCAT
ACAATGGATTGAACCATCAGAACCGTTGGGTCATACATGGCGTGATAACT
ATTTGTGCGGTACCGTGTTCCCACGTGCACGACTCACCTACAATTAATTT
ATTAacaaaatgattgaaatttg Run BLAST on NCBI transcript from alignment at scaffold_327:431865..438313+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059423 ID=TCONS_00059423|Name=TCONS_00059423|organism=Clytia hemisphaerica|type=transcript|length=6449bp|location=Sequence derived from alignment at scaffold_327:431865..438313+ (Clytia hemisphaerica)
ccgttttcccgtcaaaatttttgctgaaccctggaatcccgaaaattgaa
aaaagtaataacaccgtcacaccggcttaTACTGGTTCAAATACCGCCAT
AATGACAagataaggccaaataccgtcaccgtctgattttaaaataccgt
tttcccgtcctttttttcgtcaaatcccgtaataccgtactaaaaaaaaa
gggccaatcccgtcacaccgtaaaagtacaaaccccccccgACAAAGCCT
AACAGCCTGTAAGTTGAGAGCTGTTTCGCAAATTGCGAATCAAGCTTCAA
AATAGAGGAAGAATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGA
ATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGAAAATGCATTAGA
AAGAAGAATATGCATTAGAAAGAAGAATATGCATTAGAAGGAAGAAAATG
AACCACAATATTGAGTtaatgaaacttttttatttgtcTATTATCCCAGC
TACTACAAACATTTGGGTTTTGTCCCCAAGGTTGCATACTTGCGTCAGAT
TTGGTTCCCTCACGACCATAAAAATGTAAAACTACATGATTACCCCCTTC
TTACAAGCTAAGAAAGAATACTTCATCttccaaaactttaaaaaccAGGG
GGTATGATCTTTGAAAGGTCGTATCGTATATAAAAGGGCTTTAAAACTTT
TCTAAAATATCGATTAACGCAGTTGGCTAAATTCAGAACATAATACACAA
AGATAGCAATTGATAAAATGATCAAGTTACTCTTAATCTTTGCCCTTCTT
GGCCTAACATACGGGCAATGCTCAAGATTTCCACACTGGCCCAGTGAATT
TCGTTGGTCATATGCAGGAAATCTTGGTAATGGCTGGAAATGCACAAGAA
TTTTGGAACCATCAGATCCACACACATGGGCGGACAATTACTTTTGCGAG
CGAACAGGACCAGCCTACATTGCAAGCGGTATGAGATGGAGTTACGCTGG
TAAGTAATGGAACGTTTTtcaacattgaaacaacgtttttcgGTTCTCTG
CTAAGTTTCCTGTTAGCAacagaaaatattctttaaaaaattgataatta
ttTCTTCATCTCACAACAGGTCCTATCTCTGGCATGAGATGCACACGAAT
CATCGAGTTCAGTTCACCAGCCAAACACACATGGCGAGATAACTATCTAT
GCGTTCCACATCACAGCCCCTTCATTTTTGAATGGTCGATGGCTGGACCA
ATCCCTGGAAAATATTGTATACAATGGATTGAACCATCAGAACCGCTGGG
TCATACATGGCGTGATAACTTTTTGTGCGCTACCGTGTTCCCACGTGCAC
GACTCACCTACAATTAATTTATTAACaatgattgaaatttgaaatagacG
ATTAGATTACAATAGTTTGTAGACGATGACAATAAATGCAAAATCTTAAT
TTGACTTTTCAATACTCCAATCTTTAATTTCTACTCCAATTCTTTTTGGA
AAATACTCATCTCGATGAGAAAAATCTGTCAGAAACTTTTCTATATTATA
AAGTTGAAAAATGGTTCAGAATGCACAATAGTAGaccttttttacaaatt
aactCACGATCAACGCTTATACCTAGTTTTCAAAATGTCGCTTTGGTAAT
TGATTCTCTGAAGAGTTCTTAAGAAGTTTACTCTTTTAATCAaagcaggg
atatgttatagcggagctggataaaggacgagaattccttggcggattgc
ttctttgtcttttatattgtaaactgttcataatagaaatccatctctgt
ccccttcagtggtctgtttttataagaaaaattaagcagacaaagtattc
atgcagtactttaatcgtagaaattttagcgagattaattttagcgcata
ttagcgagtcaggaaaatcttgattttttttggatttattttagcgaatc
aagatttcaaaaaattttgcgtggataaattttagcgaatactcgtctga
caaaaatttcgcgtggattaattttagcgaggggaatgattttgaggaaa
aaataatgtgttttaatacaaaaatcaaTATAGTCACATGTCTTTGTAAC
ACAATTCTTGACTAAGAacagaaaaactttgaaatttacGCCCATATtac
tagtttttgaaaaaaatatgaaaatgataacaaaatgataaaaaatgaaa
gaaaaaacatactggatttattttagcgaatcagcTTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCAATTCGGTgcgttttagcgagatttatttta
gcgaaaatagggaaaactcgctaaaacgctaaaattagtctcgctaaaat
ttctacgattaaagtacgtttgcacatattttgctatgatgttcccgctt
taaaataatatttgcagaAGATACCTTAAAGGCTTCCTTgtaattttatc
agcgtgtgttatgaatttgatcTGGCTTTAATGattcctctttaaaaatt
tcggatgtaaatattttgacaaatattgtttcaattgacttgaaattttt
tccatagtCAGATTTGCTATCTGAAAacatcagttagaaagtgaggcacc
cgcggtgtagcgcggtatttcaaatggaAAAatgctatttataatcttac
agaagaaatttcttataactttactaatgaaaacaatgtttttcattttt
aatttcgcatagcgaaagtattacaatcgGTTTTCTGCGGTCGTAGTGCT
AAAAATCAACACTCAGCACTCGTTCTTCGTGTTCACAGTGCTCCACATGT
TCTTCTAGAACATTCTAGAATATTCTAAAGATGGACTCACGCACAAAGAT
GAATAACAGCGTTTCTTTAATGGTTCTACAAGGTGAATGTAACCAAGGGT
GTGTAAACATTCCTTGTGAAagctttttaatggctgcttgaagTCAACAC
TTTTTGTACACTTTTCTCCTGCTGTGTATATATTTTTAGTATGTTTTCTG
GTAacttgtagagtatttaaagaggtttgtCATTCGTTTACTacttagta
ttttatgtttgtgtagttattGAATGCACCAATAAGCTTTTACAGTGCAC
AGTAGagttttttggctatttttttaCCACATCCCGTACAACAACTGACA
ACAGAACCCTTCAATACAAAAACACaggtataatattttttaacaattaG
TCATAGGTGTTGATAGTGAGATGAATAGAGCTTTTCGTCGTTGATCACAT
TCATATGGAAGCAgccattttttatacaaatcaTAGATTGCCGAAATAGA
TTTGCATGGTTTTGCATGTTTTGCATATATAAATgtagaaaatgacgtca
ttttcaaaatgatttatcttttttcaatttatgaTTCACCTGTACCTGTA
CCACAAGCGCTGTTTCGTGGAAATAGGGTTTTCTGTTGTTATATAGacca
caaactttttgatttttggtaatatTCGATCGTGTGTTCGATTGCATTGC
GTTGTTCAAGTAAaacgtttgattggtttgattgattgtaaattaccttc
gattatgtttgattacgattatgttctaTTGGGAAGTTTGATTGGGATTA
AATTAGATTGGATCACttctttagagcttttttagcgtgGACGGCCAAGC
GCGTAAGTATATACGGTACGATAGTGAATAAAATCGAATACAATTAAATC
AATCGAGTGTAATCGAACATAATCAGTACAATCGAACGNGTGAATAAAAT
CGaatataattaaatcaatcgaGTGTAATCGAACATAATCTGTAATCAGt
acaatcgaacggcaaatccttggtgatattcgattgcgattatTATTCTa
ttgcattcaattgattcggcgttcgattcattcgattgacaccgtctggc
catAACATGTGAAGGTGGAAATCAATCTACAGTATATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATCTATTGCTAGTCcggatgtcctgttgaata
attaaaaactctagcACTAAAACAATGACCACATATAGCACATAATTATT
CTGAttatgcatttatttttcttacagtAATTATTGTTTTGAGGCTGGtc
tttttaaattattcaacatccaaaagcccattaactgcctaaattgctag
agacgctccgagcgtctctatgtcataaatttcacgttctcctttcataa
tttacaaaaggagcatgcttttcactttcgaattctgatttcgtctattc
agaaaactgtgataatatcgtaaaaactttttttttaaaccagaggatga
ttcctttttaaactttggtttaacttatGAGGAGCGTGCagctaaataca
aaaggaaaataaaagaaacatgtagagttaattactttaaaccttggtct
gaacacgaccGAAATGTTCAAGGGAGTGTAATAATTACCTTTATTCTTAA
TAAGAGACAGAGGTGAAGGCTGTGCACTTCTTTGTTCCCGTATTTTCAAG
CAACTTTCAAGCAACAGAGTGAATACACCCAAGGAAGTCAACAATTTGGA
GTAAAGAGGTCGGATGATTATTCTGACAAAACAAAGAAGTAAAGGCGAAT
TTCGCTTTTAAAAATCACTCGAGTTTACTggctttttcttcttcatttct
ttCCTTAGAATTCTCTCTATGCTAAATAAATGGCCATCATCCTTATAATC
ATGCCATACTTAAAGACTAATCACTATCCCAGAACTAAACAATGTCCAAG
CCGAGAAGAATCGGTTTTATATTTAGTCTCCAACCTAATACTCTCCAGTA
AAAATTGTTCTCGGACAAAGATACTGGTATAGTTTATGAAAGgttgcaaa
aacaaaaatgaaaaactgaaaaatcttATACCTGGTTTTCAACAATGATA
TGAGAAGGACAATGATGACCGAAATGTTAGAAACATGAAAGATTACTCAA
AATTCAGGGGTAAAGTTCTTTCTCGAAGGGTTAAATTCTAATCACCATTT
ACTATAATCTCCCAAGTTTTTTCAGGGAAGAGAGGAGAATTGTTCATAAG
AAGTCAGGGATAATAACTCTTAGGAGGGCTTGGAGCAGTTTAGATATGTT
TCAGTTTGGGTCAAGCGCAACAAAATAACTGACTGTTAGCTTCCTGAAAG
ATTAGTTTCTGTTGCTAAATACTTCCCCCTTATCCCTAATTAAACACTTT
CACTCAAGCATGTAGTTTTTGTAATTAATGTTATTAAAAGATTGGCTCAT
CTCCAAAGGAGCTAATAGTTATTCTTTTATCATTCCATGCGTTTTCAAAA
GGAAATCCAAAAGAACCCCGAGATTGCCCCCTCATCATATGCAAAATAAG
AATATATTCAACTAGAAAATCAGGGGGTTTGTCTTACAATGTCAATATTG
TATATAAAAGGTCCTTACAAACTCAAAAAGCATCAGGCAATAATCAAAAG
ACAACCTTCAAAGAAGATAATTCATTCAAAAAGCAACACGGTTGACAAAA
TGATCAAGTTACTTTTAATCTTTGGCCTTTTTGGTCTAACATACGGGCAA
TGCCCAAGATATCCTCACTGGCCACGTGAATTTCGTTGGTCATATGCAGG
ACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCATCAGATC
CATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACCAGCCTAC
ATTGCAAGTGGTATGAGATGGAGTTACGCTGGTAAGTGATGTAACGTTTT
TCATCGGTGAACATTTTTCGGACCTCACTTTAGTTTCTTTGGAATCTTAG
ACTTTCATTAACTTCCTGTTAGCAACAAAAACCATTCTGtggaaaattga
taattatttCTTCATTTCACAACAGGTCCAATCTCTGGCATGAGATGTAC
ACGAATCATCGAGTTCAGTTCACCAGCAAAACACACATGGCGAGATAACT
ATCTATGCGTTCCACATCACAGCCCCTTCGTTTTCGAATGGTCGATGGCT
GGACCAATCCCTGGAAAACATTGCATACAATGGATTGAACCATCAGAACC
GTTGGGTCATACATGGCGTGATAACTATTTGTGCGGTACCGTGTTCCCAC
GTGCACGACTCACCTACAATTAATTTATTAacaaaatgattgaaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059423-exon-scaffold_327-1491911889:431865..432863 | TCONS_00059423-exon-scaffold_327-1491911889:431865..432863 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1510915933:431865..432863 | TCONS_00059423-exon-scaffold_327-1510915933:431865..432863 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1575043694:431865..432863 | TCONS_00059423-exon-scaffold_327-1575043694:431865..432863 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1491911889:432984..433044 | TCONS_00059423-exon-scaffold_327-1491911889:432984..433044 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1510915933:432984..433044 | TCONS_00059423-exon-scaffold_327-1510915933:432984..433044 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1575043694:432984..433044 | TCONS_00059423-exon-scaffold_327-1575043694:432984..433044 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1491911889:438101..438313 | TCONS_00059423-exon-scaffold_327-1491911889:438101..438313 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1510915933:438101..438313 | TCONS_00059423-exon-scaffold_327-1510915933:438101..438313 | Clytia hemisphaerica | exon |
| TCONS_00059423-exon-scaffold_327-1575043694:438101..438313 | TCONS_00059423-exon-scaffold_327-1575043694:438101..438313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:431865..438313 + |
Blast
The following BLAST results are available for this feature:
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