|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059419 ID=TCONS_00059419|Name=TCONS_00059419|organism=Clytia hemisphaerica|type=transcript|length=1171bp
tcttagttgaaaaatgaaaaacatataaaaatgataaatgatTAATTGTA
ACAAAAAATGTGAAAACCCTTAATGATATGATTGAAGGGTGTATAAAACC
CCCTGATGGCTGAGTCATGGAAGAGAAAGACCAATGGAAGTGTCTTCAAA
AATACACTCTACAAGCAATGGGGTATCATCAACACTTGGGACTGTTATTC
AGTCTCCAAGGCTAGTAAGAACTTAATACAACGGTTAAAACGGCACAAAG
TATTAGATGACCACACTGGTTGTGTCAACACAGTTTCTTGGAGTGATTCT
GGATCTTTGCTTCTTAGTGGTTCTGACGATTACTCTCTCAACATCTACGA
TAGCTACAGTACACAATTGGTACATTCCATCAAGTCTGGACATACAGCTA
ATATctttagtgcaaaatttctaCCATGTACTTCAGACACAAAGATAGTT
TCATGTGCTGGAGATGGTATGCTTCAATATAACATCATTGGTACCGAGTA
TGGTCAGAATCCTTTCAACTGTCACTCAGGAACGACTTATGAGGATATTT
TGATTGATGCAAAGCATGCAGTGACTTCAGTCAGCATCAACCCGATGCTA
CCATATCATTTAGCTATTGGATGCAAAGATAGCTTTGTACGTGTCTTTGA
CAGGAGAACGTTAGGCACTAGCCTGGATACAAGAAGTGTGAACAGGAATA
GAGGCTGGATGCCTGGATTGTTTTGCAAATTCAAACCGTCGACTTTCAAA
CAAGATTCGAATTGTAGAGTCACGTCATTGCAATACAGTAATGATGGTAA
CGACTTATTGGTCAGCTATTGCAGTGATTATATCTACCTCTTCACTGTCC
GTGAAGAATCTTCAAAAGTGGATCAAGTCTCCACAAATCACCAAGAAGAA
CTAACAGATCCCAGTGAATCACTTACTGATAAACTACCACCTGCTAAACG
ACTTAGACTACGCGGTGATTGGTCAGATACAGGACCCAATGCCAGACCAG
ATACAGATGAGGAGGATTCACCAGAACAAAACATTATGCAGAGAATGTCA
GAATTCTTCTCCAGATGGATCGAAGGTGCAATGTCCTCAACCGTGAGGCA
TGCATCGACTTCAAGTGAAGATAGTGATGTAGCCCAGCCCACGCCTGGAA
GTAGCATGCCCATACCTGGAT Run BLAST on NCBI transcript from alignment at scaffold_327:404586..406847+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059419 ID=TCONS_00059419|Name=TCONS_00059419|organism=Clytia hemisphaerica|type=transcript|length=2262bp|location=Sequence derived from alignment at scaffold_327:404586..406847+ (Clytia hemisphaerica)
tcttagttgaaaaatgaaaaacatataaaaatgataaatgatTAATTGTA
ACAAAAAATGTGAAAACCCTTAATGATATGATTGAAGGGTGTATAAAACC
CCCTGATGGCTGAGTCATGGAAGAGAAAGACCAATGGAAGTGTCTTCAAA
AATACACTCTACAAGCAATGGGGTATCATCAACACTTGGGACTGTTATTC
AGTCTCCAAGGCTAGTAAGAACTTAATACAACGGTTAAAACGGCACAAAG
TATTAGATGACCACACTGGTTGTGTCAACACAGTTTCTTGGAGTGATTCT
GGATCTTTGCTTCTTAGTGGTTCTGACGATTACTCTCTCAACATCTACGA
TAGCTACAGTACACAATTGGTACATTCCATCAAGTCTGGACATACAGCTA
ATATctttagtgcaaaatttctaCCATGTACTTCAGACACAAAGGTTACT
TTATATCTTTCTACTTGAATAATTGAGATAGACAACAACATTGATTTGTC
AAACATTtttgataagcacttattcaaATGCAGAAACATCTTCTTCGTTC
TTCTTTCAGCTTCTTTCTCactgaaaactgaaaattttaccTTCAAATTT
ATTAAGCtcctttcattttattttcttattcagATAGTTTCATGTGCTGG
AGATGGTATGCTTCAATATAACATCATTGGTACCGAGTATGGTCAGAATC
CTTTCAACTGTCACTCAGGAACGACTTATGAGGTATCTGATTTTTTGGAT
ACAAACTCATTTCATGTTATTAAATCAAAGAGAAAGCAAGAGTTCAAGAC
CCAACCTATGAAGTGTTTATTTGCTCTTTTTTCATTTAGGAAAAAGAATG
CTTTTTGATTTCATATTTAAACCAGTTTGGCCCAAAGAAGTAGATTTAGA
ATAGCATCCGGGTCATTGCCTAAATTAATGTGAATCGctgggaatttgaa
tttttactaaTTTCAGTCAGGAACCtctatttatattttattataagGTA
CTAGTTACACCAGGTGATCCAAACTCGTTTCTCTCTTGTGGTGAAGATGG
TACAGTACGTTTATTTGATCTCAGGACTAAAACTAAATGTAACTGCCAAG
AATGCGCAGAGGTGAGTATTTTTGACTCTGTTTGACTcaaaaaaaatatg
gaaaaggGGTCAGATAATTCGCTTGGTCAACATTTTCCTAGTTTCCTAGA
CGCTTAAAAATAGTATGACCAAATTTACTTAAACACGAAGGAAATGAGAA
TTATAACTTGCGGTTATGGCTGTGAAGACACTTTTACTGGTGATGTCAGC
CTAGGGACATAATGTCCCTCCAAAAAAACAAGAGTTAAAACATTTTATTC
TTAGACATAAAATGAGAAACTATAGCTAATATAGTTAATAGCTTTAACAA
TCAACTCTCTTTTTATACCAGGATATTTTGATTGATGCAAAGCATGCAGT
GACTTCAGTCAGCATCAACCCGATGCTACCATATCATTTAGCTATTGGAT
GCAAAGATAGCTTTGTACGTGTCTTTGACAGGAGAACGTTAGGCACTAGC
CTGGATACAAGAAGTGTGAACAGGAATAGAGGCTGGATGCCTGGATTGTT
TTGCAAATTCAAACCGTCGACTTTCAAACAAGATTCGAATTGTAGAGTCA
CGTCATTGCAATACAGGTAAGTCGTTGATATTTATTTTAATCAgaacttt
aaaattttctttcttaaaacCTTTTTGTGGGCTTCCGAGGTAGTGCCTTG
GAATAATGTCATCTTTCTTTGTCTTCAGTTTGACAgcacaaaaaactaaa
attcttCTACCTTCTTGAGAATTATCATCAAGTTGAAATTggaattttaa
gcattttttctGCATTTCTTTAATTACAGTAATGATGGTAACGACTTATT
GGTCAGCTATTGCAGTGATTATATCTACCTCTTCACTGTCCGTGAAGAAT
CTTCAAAAGTGGATCAAGTCTCCACAAATCACCAAGAAGAACTAACAGAT
CCCAGTGAATCACTTACTGATAAACTACCACCTGCTAAACGACTTAGACT
ACGCGGTGATTGGTCAGATACAGGACCCAATGCCAGACCAGATACAGATG
AGGAGGATTCACCAGAACAAAACATTATGCAGAGAATGTCAGAATTCTTC
TCCAGATGGATCGAAGGTGCAATGTCCTCAACCGTGAGGCATGCATCGAC
TTCAAGTGAAGATAGTGATGTAGCCCAGCCCACGCCTGGAAGTAGCATGC
CCATACCTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059419-exon-scaffold_327-1491911889:404586..405029 | TCONS_00059419-exon-scaffold_327-1491911889:404586..405029 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1510915933:404586..405029 | TCONS_00059419-exon-scaffold_327-1510915933:404586..405029 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1575043694:404586..405029 | TCONS_00059419-exon-scaffold_327-1575043694:404586..405029 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1491911889:405219..405317 | TCONS_00059419-exon-scaffold_327-1491911889:405219..405317 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1510915933:405219..405317 | TCONS_00059419-exon-scaffold_327-1510915933:405219..405317 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1575043694:405219..405317 | TCONS_00059419-exon-scaffold_327-1575043694:405219..405317 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1491911889:406007..406251 | TCONS_00059419-exon-scaffold_327-1491911889:406007..406251 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1510915933:406007..406251 | TCONS_00059419-exon-scaffold_327-1510915933:406007..406251 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1575043694:406007..406251 | TCONS_00059419-exon-scaffold_327-1575043694:406007..406251 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1491911889:406465..406847 | TCONS_00059419-exon-scaffold_327-1491911889:406465..406847 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1510915933:406465..406847 | TCONS_00059419-exon-scaffold_327-1510915933:406465..406847 | Clytia hemisphaerica | exon |
| TCONS_00059419-exon-scaffold_327-1575043694:406465..406847 | TCONS_00059419-exon-scaffold_327-1575043694:406465..406847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:404586..406847 + |
Blast
BLAST of TCONS_00059419 vs. Swiss-Prot (Human)
Match: DCAF6 (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 1.482e-69 Identity = 151/336 (44.94%), Postives = 195/336 (58.04%), Query Frame = 1
Query: 217 KNLIQRLKRHKVLDDHTGCVNTVXXXXXXXXXXXXXXXXXXNIYDSYSTQLVHSIKSGHTANIFSAKFLPCTSDTKIVSCAGDGMLQYNIIGTEYGQN---PFNCHSGTTYE--------------------------------------DILIDAKHAVTSVSINPMLPYHLAIGCKDSFVRVFDRRTLGTSLDTRSVNRNRGWMPGLFCKFKPSTFKQDSNCRVTSLQYSNDGNDLLVSYCSDYIYLFTVREESSKVDQVSTNHQEELTDPS-ESLTDKL--PPAKRLRLRGDWSDTGPNARPDT----DEEDSPEQNIMQRMSEFFSRWIEGA 1080
+ IQRLK L+ H GCVNT+ W+D+G +LSGSDD L I + YS +++ +I+SGH ANIFSAKFLPCT+D +IVSC+GDG++ Y + + N F CH GTTYE DILI+ + A TSV+I P +PY+LA+GC DS VR++DRR LGT R G+ +F PS S CRVTSL YS DG ++LVSY SDYIYLF ++++++ EL PS E ++L PP KRLRLRGDWSDTGP ARP++ D E SP ++MQRMS+ SRW E A
Sbjct: 35 REFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRG---TTGMVARFIPSHLNNKS-CRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTAR----------ELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEA 356
The following BLAST results are available for this feature:
|
