TCONS_00005907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005907
Unique NameTCONS_00005907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005907 ID=TCONS_00005907|Name=TCONS_00005907|organism=Clytia hemisphaerica|type=transcript|length=962bp
GAGAGATCTTGTTTGCTTTTTGACAGAAAATTTTTGTGTCATGTAATCTA
TAGAAAtgacaaaaacaaatttttgtgaGAAATTTTACGAAGAGAAGGAA
TATGCAAGGGAGATGTTTCTGGAAGATAAAGTAGCTCTATAATACAGTAA
AATATAGCACCAAACCACAAGCGAAAAGAGGTTCAAACATCTGGTTGGAT
TTGATGTCTACAAccaagaaaaaaagataaatcatTATCGTGGCGAAGAA
ATTTGGACTTGGCTACACAATGAGCACACCAAATAGTTCTTCTCCAAACC
TTCTTACAGTTCAGAACAAGGGCAGTCAACTGACATCACCAGTAGACACA
CCAGACAACATCAGTTATCGCTCCGAAGATGATGATTTTCTTTACGAAGC
ACCGAAAATAAGCATCACTCTACTTTATTCGCTCCTTGCTACTATCCTAT
GTTTCCCTATTGGATGCTTCGCATTGAACAATGTTTATAAGGTATCGACA
TATCTACGATCTGGCCGTAAAACAAGAGCTCGCAAACATGCAAGATTCGC
CAAAAATCTTTCCAACGCTGGAGTTGTCATTGGAACGTTGTTTTGGTGTA
TAGCTATTATTTTAATTATCATACATTCGGTGATATTGAGAAAAGAAGAT
AAAAGCAAAGTAGATTTGACTTAGCGGAGTGGATTATTAAAAAGAGATAT
TTTGGAGAATTGTGGCAGAATGAATGAAATACCATCTTAAATCAGCGCCA
CATTAAAAAGCGTCATTCTTAACCTTTATATTGGGCTCAtccagaaacat
ttgttcaagtagagtggaggatatattattctTTCAATGATTTACTTCCT
GGAGAGTTCGATCTTCAATCCCCTGGATACGTGTTATACACCTGGAGATT
GCAAATTGACCTGGTTTTCACTGGAAAGTATGGTGAAATACCCGATGAGA
GACATAGAAGAA
Run BLAST on NCBI

transcript from alignment at sc0000061:328953..334702-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005907 ID=TCONS_00005907|Name=TCONS_00005907|organism=Clytia hemisphaerica|type=transcript|length=5750bp|location=Sequence derived from alignment at sc0000061:328953..334702- (Clytia hemisphaerica)
GAGAGATCTTGTTTGCTTTTTGACAGAAAATTTTTGTGTCATGTAATCTA
TAGAAATGACAAAAACAAATTTTTGTGAGAAATTTTACGAAGAGAAGGAA
TATGCAAGGGAGATGTTTCTGGAAGATAAAGTAGCTCTATAATACAGTAA
AATATAGCACCAAACCACAAGCGAAAAGAGGTTCAAACATCTGGTTGGAT
TTGATGTCTACAACCAAGAAAAAAAGATAAATCATTATCGTGGCGAAGAA
ATTTGGACTTGGCTACACAATGAGCACACCAAATAGTTCTTCTCCAAACC
TTCTTACAGTTCAGAACAAGGTAAGAACATCAATATCTACTTAAACTATT
TATCACAATAGCTTCTTTCTTTCCGGGGTGTAGAGGAAGAAAATTTGGCA
TCATAGGGATATATATCAGAATTTCTCAACTTTTAGCCATGGAAAGGGCT
ATGAACTTTTGGGAGTTTGGCAGTTTGAATCCTAGAATAGAACCCTTTTT
AGAGCTATGGTCACTACTAGGTAATTATAAAGGTACCCGAGGGTTGAAGA
CGGCCAGAATTAATCAGTATCAACTCGGAGATTTAGTCATATTTCAAAAG
CAAAGATGATGGGGGTAAAAATAAGGTTCTAGAGGTGGTCCCAACCATTA
TCAAAATATAAGATCCGCATGGTGTGGTTTTAACCACTCAAAAGTGGTTG
TTCACGCAGTAGTAGTAATAACAATATTTGTTGTAAAGCAAAGTACAATT
GGTTCAGTTTTAGGTTGTTAAAAAACATCAACATTGCATTGGTTTCTAAT
GATTGAGTGAATCGATTTTAAATTCAGAGACGGTTGTGGGGCTTGAAGCT
TATAAAACAAGAGGTTCTCAAATGTTAATGTACACTTTTTTATAAGAGCG
TCAAAACCTTTGAATTTTGAGAAGCTGAATAATATTTTTCCAAAGATCAA
AATAGAACCTAGTTCGAGTCGATTTAAAAGGAATCTGTAAACAGTTTTTT
TGGCCAACTGAGCAATGACCTTTTAGGCTTCTTAAATTTGAGTTGGAAAA
CCACAAATCTGAAAACTATATATACAGGCTTTTGAATTTTGAATTTTTTT
TTGTGGGAAATCGGTCTATATAAATATATTGAAAACAAATTTGAATGCGA
TAAATCGAATTACCACAGTAACTATATCCTACTATTTTCATACAAATGTG
GGAATTTTATGCAAGATCTTTTACTTTTTCAGTTAAAATGTTGATCAGAT
TTTTGGAATGGAACATTTGCAGGGAAATATTACGTTTTTTAGTAGTAAAG
TGATATCTCAATAATTTAGGCTCTAGAGTTTAGCTTTTGAGACTTAACAA
AGTAAACTTTTCAAACGGTTTTACTATTCTTAACAAGGCAAGAATCTGGT
CTACTTGGCTAAACGGTGAAAATTTAAAACTGGAGGGTAAATTTCAACAA
AGAATCAAAGAATTGCAAAGCAATTATAAAATCAACCTTCCAAAGGATGA
AAATTCCTTAAAAATGAAGAGTTTTCTCAATAATAAATTTCCATGAAGTT
TGATGTCTAAGTGGTTAGTCGATTTGAAAATAAAGGTTGGAGAATTTCTG
TAATTAAGAATACACTATTTTAAGCTACAAGTTACAACCGTTAATATCTT
GGAAAGCAGAAATAGACTTGTATGCTTTTATGATTTTTTTATGTCCGTCA
AAATTCGCAAGAACACAAAATTTCTTTAAGATTGTGCAGGCCATTGAACT
CCTTGCATGTGGAAAACTTTTTCACTTAAAGGTGATAAGAACAAACATTC
ATTGAAACTAAAGTCGGAAAAAAACAAGCTAAGGATCGAGAGGAATGTTA
CATTTATAACAAGGGGGAGTGATGTATGCTGAAGACTGAACTTTATTAGT
TAGCTGGTTGGAATATGGCAATCAAACAAGCAGAATTATTTATTTGGTTT
TCCCCTTTTTTGACATTTTAAGCTTAACAGTGGGTCTATAAAATCTAAAG
GAAGAGAAGTCCTTGCTTAAAGCCACTATACTGATTGCTTTCTGGTTAAT
TAGTTAATCAAATAAAGCCCAGGCTTTGTTGCACTTTATCTCAACTTGCT
TTCTTCAAACTTACAAGAAACTTTTTTATTGAAATATTTACTATGAGCAG
TCGAGTAATTTGAGAAGGTTCGATTTTTGAATTGTTTGAGAGGGTTTAGG
CTAGGCGAATCCCCTCTGAAAATAGCACACCCCAAATTTGGGATAACTCT
CGGACGGGAATTCTAAACATGATGCGTATTTTCTATATCAAAACATATCA
GAGGGGATACGTGTGCAGCCTAAACCTTATCGAATTACTTGACTGTTCGT
CGTGAGTATTTCAGTAAAGCAGTTTCTTGTAAAGTTGAGTAGTTCAAACA
GTTCAAGAAATCAAGTTGAGTTAAAGTGCAACAGAGCCTAGGCCTAAATT
TAAAAAGGGAAAAATCTGATGTTTATGAGTTTTTTGACAGCCAAAAATTA
AAGTGATGTACGACGATAGTTTAATCTATTCTAATCACGATATTTTTATT
GAAATTTTTTACGCCATCAAGATTGTTATGATAAATTCATGCTGTAGAGG
GGGTTTAGGCCTGAAGACTACCCTGGTGGGCGAGCGCACAAATCTCAGCG
TGGCTATGCTTAAAACCGTTATGCTTAACAACAAAAAACGTGAAGCATAT
CCCAAAACCCCCCAAAAAAACAACACCTTACGTCCATATTAAACGTAAGA
TGAACGTTAAAACAACATTTGTGATAGTCTACACAATACAGTTCCAGGCT
TTTAAGCTTCCGGGCATTTAAGTTTACGTTTTACGCTCGAAACGGAGGAA
TATATGACGTAGCCTACATTTGTGAGTCAACTGGGTTACATTCCACATGC
TAAATCATTCATTCAAAAATTTTTAATGATAAGCTTTCTTTTCTATCGTT
TTTTCCAGATCGCGATTTAAATACTGCTTTTTAAAAAATACTAATCGAAA
ATGATTTAAGTAACATGATAGACCGGTCACGTTTAAAGAGTTGATGAAAT
GAGGAGATAGAACAGATGATGAAAACTTTTTATTTGCGTAGGTTGACAGA
GTGAACTAAGCTGTAATAGAGAGAAGTATTTGGTTAAATAATCGCTTCAT
TTCAAAAGAAGCAGTACTTTTTCTATACCAATACCACTGGTTTCATGCAT
CATTGATGCAATCTTCAGTTGGGTTCTTTAGGAAAATGAGTATATACGTT
ATGAAAATTTTTAAATTCACGCAAGGTTAAGGTATCACTTTTTTGGGATC
AGTTATAGATATAAAATATTTGACTAAAAGGGATGACTTTGTCGAATGGT
AATAGGTCAAATAGGCCAAACTTACGAAAACTTTCCATATGTGAGAAAAA
AATCTTGATGAAGAAGAAGTCAACAACTTCAAGCTTGGTAAGCAGCGGAT
TGTGTATTTATGGTCCCAACGGGCCGTTGGAAGCGAGGGGGGCTAGAATT
TCGGGAAGAAATAGCGAAAATTGTTCATCTTCTGAACCTTTTAAACACAA
AAAGACGCTTTCTAATTGTTTTTTTTTTTAATTAACTTTAAAAAACTTTA
GTCCGCAATGGCGGTGGGTGCGTAGGTCGGGCGGGACCCATGGTATTTAC
GGATTAGGATTATTCGATTTGAATTTTGTGAGTGGGGAATTTCGAATTCT
ATTAACTTAATGGGATCATTAGTTAGTGTTGGCTACTTAGGTGGTAAAAT
AGCGAAATAAGGAAATAAGGAAATCGTGTTAATTCTGCCTGAATCTAGTA
ATCGAACCTTGTACCGTAAGTTGGTTTAATGTCGACATCCCTCTTTTAAT
GCCGACACCCTTCTTTAGGGATAGGGATAATAGGAAGGTCGGGATCACTT
ATTGACAAAAGATATTTTCCTCTTTTATCACTAAGCAAAGAAAAATAGTT
TCCATCAGCGATTCTGACCTTCCAATTATTCCTATCTCTAAAGAAGGGTG
TCGAAATTAGAGGGGGATGTCGACATTAGACCAACTTACGGTACGTATGT
TGGCCTTGTTGGGCAAACACTCCTGCTTCGCAAAATTAATACAAGCATTG
ACTGGCTCGCTTTCGACATCTAGTCGCGCCGCGATACTTCAACCATTAGT
AGTTTTAGATATAATTAGAAGTGGGCGTTCACGTTCACGATAAAAATATA
AACAATCTTTTTTAACCAGGAGACTTGTTGCGAAAAAAAGGTAAACAATG
ATCATAGTGATAATGATATCTGAGAATTGCCACTTTTCGACAAGTTATAG
ATAGCAGCCCATCCCTAATATAGAAAAGGCTATAAATGGAAATCTAGGTT
TTTTTATTCCTGCCAGATTGATCGTCATTTGGTAAGTGGTAGCGGAGGGC
TGTAGCGTCTTTTAACACGCTATTAAAATACTACTATGATAGTTGAATGT
TAGACGGTCTTAAACTAAACCTCGACTTCTTTCCTCTCTTATACAGGGCA
GTCAACTGACATCACCAGTAGACACACCAGACAACATCAGTTATCGCTCC
GAAGATGATGATTTTCTTTACGAAGCACCGAAAATAAGCATCACTCTACT
TTATTCGCTCCTTGCTACTATCCTATGTTTCCCTATTGGATGCTTCGCAT
TGAACAATGTTTATAAGGTAAGTTTGTTTTAAAAAATTTGGAAAATTTTT
AACGAACGTAGTTGCCGATTTTTTGTTTGAATCATCTAAATTTCAAACTA
GCGAAAGTTAAAGGTTTTATTTTTGCTTGCTGATATAAACAAAAAAATAT
CTTTATTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGTGTCTATCCA
ATGATGTAACTGTTATTTAAAAACAAAACCTTCAAGCTATTGTAACCGCT
AAAGACTTATCCGGGGGACACTCAAGGTAATCGACCCACCTACTAATGCT
ACCGTAGTTTTTGTTATGTTTTTCAGGCTTCCCAAAGTGCAGAGAGAGAG
CACTCTAAGGGTGTAAAAAGTGATAAAAACGAGTTTTTTGAGGCAAAAAT
TTTGAAAAATAGTACCTTTCGGCAGCACCATCCTCGCAACCGTTTTTGCT
TCATTATGATTTCTAGGAGTGGAATGAACCTGCTATCTCGGGGGATTGGT
TCTGGTTATATAGGGGAGGGGGGAGTTCGTATCTCTCTGTAATCCGAACA
ATTTAAGACTTTCTGTTTGAGCTCGAATTAGTGAGGGTCAAAATAAATAA
GGTCCCTTAAATTGGTTCTTTCCTCACAGGTATCGACATATCTACGATCT
GGCCGTAAAACAAGAGCTCGCAAACATGCAAGATTCGCCAAAAATCTTTC
CAACGCTGGAGTTGTCATTGGAACGTTGTTTTGGTGTATAGCTATTATTT
TAATTATCATACATTCGGTGATATTGAGAAAAGAAGATAAAAGCAAAGTA
GATTTGACTTAGCGGAGTGGATTATTAAAAAGAGATATTTTGGAGAATTG
TGGCAGAATGAATGAAATACCATCTTAAATCAGCGCCACATTAAAAAGCG
TCATTCTTAACCTTTATATTGGGCTCATCCAGAAACATTTGTTCAAGTAG
AGTGGAGGATATATTATTCTTTCAATGATTTACTTCCTGGAGAGTTCGAT
CTTCAATCCCCTGGATACGTGTTATACACCTGGAGATTGCAAATTGACCT
GGTTTTCACTGGAAAGTATGGTGAAATACCCGATGAGAGACATAGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003366XLOC_003366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005907-exon-sc0000061-1575043694:334383..334702TCONS_00005907-exon-sc0000061-1575043694:334383..334702Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1575043694:330036..330206TCONS_00005907-exon-sc0000061-1575043694:330036..330206Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1575043694:328953..329423TCONS_00005907-exon-sc0000061-1575043694:328953..329423Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1510915933:334383..334702TCONS_00005907-exon-sc0000061-1510915933:334383..334702Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1510915933:330036..330206TCONS_00005907-exon-sc0000061-1510915933:330036..330206Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1510915933:328953..329423TCONS_00005907-exon-sc0000061-1510915933:328953..329423Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1491911889:334383..334702TCONS_00005907-exon-sc0000061-1491911889:334383..334702Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1491911889:330036..330206TCONS_00005907-exon-sc0000061-1491911889:330036..330206Clytia hemisphaericaexon
TCONS_00005907-exon-sc0000061-1491911889:328953..329423TCONS_00005907-exon-sc0000061-1491911889:328953..329423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:328953..334702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0471152	0	0	0.052191	0.5083	0.301249	3.1393	2.94885	2.66284	1.49925	2.91042	1.9132	7.39055	7.65656	3.9149	5.14715	18.5333	16.754	9.46658	10.9325	20.4145	15.3109	3.36954	6.71536	10.0159	11.2859	17.2891	12.5049	7.31174	5.20811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top