TCONS_00059257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059257
Unique NameTCONS_00059257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059257 ID=TCONS_00059257|Name=TCONS_00059257|organism=Clytia hemisphaerica|type=transcript|length=1069bp
TGTAcgtgaaaataataaaacatgGTTTATAAACGAAAGTTACATGATCA
ATGGACCAGACGTTCCCGTAGGAAATCTTCATTGAAAGATTTGAACTTCA
ACGATGAAGGTGAAAAATGGTTGGAGAAGGAGAGCTTACATAGTGCAGTG
GAAGTTCAAAAGTTGAAGAATTCAAGTGGTTCTCTCTCTTCTATATGGAA
AAACAATACCAATAAACCGAAANTCAAGTGGTTCTCTTTCTTCTATATGG
AAAAACAATACCAATAAACCGAAACTGAGACAAGACAGTACAATCTCTGT
GGAACCAGAAATTATCAACGGCCCCGAAGAAGAAGATGACGAGCCATTAC
TGTCAGGGAGCGGTGAATTCGAACGATCATATTCAGAAGGTGAACTCGAT
AATTGGAAAGAAATTCTTGATAAGTGGACAGACTTTAACACGAAACCAAG
CAAATTGACACAATGTATACGCAGGGGTAATCTACCGAATGCAGTGCGTG
GTGATGTATGGCAAAGACTCAGTGGTAATGAAAAAGATGACGAAATTAAT
AGAAGCTACGAAGTCCTTTTTAATAAGGATTCGCAACAAGAACAGGTCAT
ACTATGGGATGTTACGAGGACTTTCCCAGCACACGAACGTTTCAGAGAAG
CCAATGGAAAAGGACAAAATGCACTGTACCACATAAGCAAAGCATATTCA
AATTATGATGAAGAAGTTGCTTATTGTCAAGGACTATCGTTCATTATTGC
AACATTCTTACTTCACGTTGAAGAGAAAGAAGCTTATTCACTATTGGTCA
AAATGATGTATGATTATGGTTTACGTGATTTGTTCAACAATGGATTCGCC
TCTTTACATCAATATTTCTTCGTACTCGACCGCATTCTGGAGGTTTGTAC
TCttcatattcatgatatgtaccattgcaatgtcttccacggacccaaca
gctgattggttgaaagtgacgtattgactgattttacgtcatttacaacc
aatcatctgttgggtccgtggaagacattgcaatggtgcttATCATGAAT
TCTATTAGTTatacggttt
Run BLAST on NCBI

transcript from alignment at scaffold_320:241192..247927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059257 ID=TCONS_00059257|Name=TCONS_00059257|organism=Clytia hemisphaerica|type=transcript|length=6736bp|location=Sequence derived from alignment at scaffold_320:241192..247927- (Clytia hemisphaerica)
TGTACGTGAAAATAATAAAACATGGTTTATAAACGAAAGTTACATGATCA
ATGGACCAGACGTTCCCGTAGGAAATCTTCATTGAAAGATTTGGTAGGTT
TTTTTTCCATTCCAACTTTAACATCACATGAGGTTTTGGTATCGAATTTG
CCAAAATTGAATGAAATTAAAATGTCTGTCAATGCTATCATATCAGAATT
TTTATATTTTCGATTCTGTTAAACTCGAACCAAATTTCGTTTTTGTTGGA
GCTTTTGAAATGTCCCCTTTTGGATAGTTCAAAGCCTCCTATCATAAATG
ACTACGGTATGGCAGAATAACTAAGTTAGAAAAAACTGGTTTAGAGAATA
ACATCGCCTACTTTTTTGGCTTACTTTTTCGGCTTACTTTTTCAATAATC
TTCAGGTAAAATTTTGACTACGTTACTTTAAACATGAAGGCATAAACGAG
TTTATTTAGTGTATCTGGGCTTTCCTGCGACGGAAACGGTTAGCTTCTGA
TATTTCTAGATCCTGATTGTCTGAGGACGACGGTAAATTGGCACTTTTGC
CGTACCAGGGAACTTCTCGGAGTTCAAAGTTTCTCACCAATAACCTCTTA
TTTTGAGTCATCTTTGATCACTTAATGCGATTTTCGGTATCAGCAGTGGT
TTTCTCATCAACCACTCTTAAGATTGTGAAGAGATCGAACATCAGATAAC
CATTTTTTAGTCAGTGTCTAAAACATTCTATAAACCATAATAAAATCGCT
TGAAAGTGAAAGAAACGTTCAGATACTGGCTAGTTTAAAACTTCGTCAGT
CGTTTATAATTTCAAATTTCAGATGATTACAACCCAAGAAAACGTCACGA
TTCTTACACACAATCTTTTAAAGAAAAACCTCAAAAATAAAAAAAAATTC
AAATAACAAGAAAGTTGTGAAACCACAACGTTTAAAATTTCAAACGACAT
TTATTCGAACGACAAGAAATTATTCAACAAAATTCTTAGAAAATATTATG
TTTTATGAAAGTGTCTTGTAGTATAGTTTAAATCGTTCAGAAAAATCTTT
TTCCTCTGAATGAGCCATGGATACCTACTGAAAACTCTACAAACAAGATG
AATACCATAGCCATGAGGAAATCTTTTTATTTCCTTCCGTCCTCAATGTT
TTGACTTGGTTTCGACTCTTAAAGTTATGCTATCCTCTGAAGTTGTTCAA
AGACGTAAAAAAGACCATTGGCCAAAGAAGAAAAAGGACGTGACAAGAAC
TTTCAGTTTGAATTTGGTATATACATACAAATTAGATTATTTACTCGGGA
TACTGATAGATAATTTGTTCTGACTGCTAGTACAAAAAGCGAACAGCTAA
AGTAATATCATATTAATTCACTAGTTTTGTATACGCAATCATTGCTAAAA
TGCAAGTATCATGGTACGTGTAGAAAATGTCTGCAGAAGCTTTTATAGGT
TTCAATGAACAACCTAAAAGTTCACAATGAGAGACGTAAAGTAGCTTGTT
TTTTTTCCGTATTGTGATTTACTCTTTGGTTTCGTGGATTGCAAAAGTTC
TTTTCCATGGCGCCTTTTCTCAGGTGGACTTTAGTTATCAAAATTAAGTT
TGCAGTCTTAAGTTTAAAGGCCATCATTCAACGTATACCCCACGGTATAT
CCTACTATTTGCTTACAAGAACAGCCCTGGGAGCCCGTGCTGTGGCAGCG
TAAATTTTGAAAATTTCTTTTATAAAAAAAAAGTGTCTTTATAAGGTTGG
TGCAAATGCGAATATTCCATTCAACATTTCAAAGTTCATTAATGGACAAA
TGTTGGATGGCAAACGCAACAAACGGCATTGAACACTTTAATTAGAATAA
CCACATGTATACAACATAAAATGCTGTGTCGGCAAAATTTTGGAGTCATT
TGCGCTAGCTTTTATATGAAGGAGTATGAAAAATATAGTTGTAATGTCTC
ACCATCCATATCATTTCTCTACCATAGAACTTCAACGATGAAGGTGAAAA
ATGGTTGGAGAAGGAGAGCTTACATAGTGCAGTGGAAGTTCAAAAGTTGA
AGAATTCAAGTGGTTCTCTCTCTTCTATATGGAAAAACAATACCAATAAA
CCGAAANTCAAGTGGTTCTCTTTCTTCTATATGGAAAAACAATACCAATA
AACCGAAACTGAGACAAGACAGTACAATCTCTGTGGAACCAGAAATTATC
AACGGTGTGTACTCTTATTTCCTGGTCTCCTTCAGTATAAAGTATAAATT
TAGGGTGTTTTATGGGTCTTCGAAAACATTTGAAGCCTGGGAGTTGATGA
AAGATTCAGTGGAGACTTGATTGTTGATTGAACCTTTTTAGAAGATTCGT
ATATTCTTTGCCGGACTTTTTCCTATCAAACTCTGCTATAACTTCATAAA
ATCTCAGTCAATATAAGTGAAATGACAAAAAGCATAAATGCCCTAAAGCA
CTATTTCAAGTAATTGACAAAATAGGAAAATTCTTTAAAACATCCCCTAT
AATATGACAATAATCACTGTATAGACAACTCCTTACTCTAATATAATATA
GTTTCGTTTTGCACTCGTTCCCAGGCCCCGAAGAAGAAGATGACGAGCCA
TTACTGTCAGGGAGCGGTGAATTCGAACGATCATATTCAGAAGGTGAACT
CGATAATTGGAAAGAAATTCTTGATAAGTGGACAGACTTTAACACGAAAC
CAAGCAAATTGACACAATGTATACGCAGGGTAAGTTTCTTGATTGTTTAG
CGGTAAAAGTGTGGTGGATATCTTGCACGAAAAGGCTAAACCTTTTTTTC
CTAAGACTACTTTGCATGCATGTTGTTTCTTTATCGGATTCAAGAGAATT
GTTCTATGTTATTGTTTACAATGTAATGTTTTCAAATGGATAGAATTTCG
GACAGATTGCTTTCGGATCGTTTTCATCTTATTTTTTATCCATGTGAAAT
TGTTTTGATGGTCACGCTTTTCTCTATTTTGTTATACTCTCTCTTGGATG
TTTTACATCAAAACCGCTTCGTACCTCTGCACACCAACACCACCAGCTTT
GTATCTGTAATGGTACATTGTGTAGGTTTTCAGATTTAAGCCCCCCGACA
TTCTGTGGCCGTCAGTTGGGCGATTGATACCTGAGGTCTTTCAACGGAGT
TGTGCTATGTCCATGTTTCCATAAAATAATTTTGCTGATAAATTTGTTTA
AATTTTTGTATTACTGTGTAGAACTATCTTTCTCTCGCAAAAGGTAATCA
AAGAATGATCAAAACGATGTGAGGTATTTTTAGCAATCTCAATACTTTTT
CTCGTTTTTACTTTGCCAGGGTAATCTACCGAATGCAGTGCGTGGTGATG
TATGGCAAAGACTCAGTGGTAATGAAAAAGATGACGAAATTAATAGAAGC
TACGAAGTCCTTTTTAATAAGGTAAAAGCTCTTCTATTTCCCCTACCTCC
CTGCCTCTCAAATAATTGCTAATCGTTGATAGATAACTTCTCGTAGTTCG
AACGACTCTCTCTTTAGAAAAGAAAGAGGTTATTTAACCAAGGGATTGTA
CCCCCTTTCGCATTCTTGTTTTTTTTGATTGTCTACCTGGGTTTTACTTC
TGCCTCCATTATTCTTGTATCATTTTGCTTTTGTAACCGTACATATCTAT
CCTTGGTTTACTAGTTGCCCAAGGCCTTCCGAGGATCACGTTATAAACCA
ATTTCATGCAATATTTAAATTTAAATCTATTTGAGCCCTTCTAGAACATT
CGCAGGTGTCATTTTATGGTTGTTGTGTTTGTGGCTATGCCTCGTTTCCA
TAGTGTCCTCCCCCTCTGGATTCAGGGGGGAATGGGTTTTGAGGTCAAAA
GGACGTATAGGGGGAAAGAATTTTTTTTGAAGCCAGGGTGGGGAAAACGA
GCAGGGGGGATGGAAAATTTTCATTCTAGGCATGGGCATATGTTCTTCTT
TCATTTATTTCAACCAGCAATATTACGGTTTAAAAACAACCATCCTTTCC
ATTTATTCTTGAATTAGAACTACCTTAGGGAAAACAATAAGCGTTAAATT
CATCAAATTACAGCTTTTTATGCTTGAGGGGGGGGGGGGACAGAGAAATT
TTTGGAGGCAGGGGGGGGGAAAATGAGGGGGAATGGAAAATTTTCATTCT
AGGCATGGGGGAAAGAGGCCCTGAAGGACACTATGGTTTCACAAATAGCC
CAAGGAGCTGCCGGGGATGGTATTTAATAATCGATTCAATACTATTTCCA
TAAACTAAAATAATCAAGTATTATTCTGCAGGATTCGCAACAAGAACAGG
TCATACTATGGGATGTTACGAGGACTTTCCCAGCACACGAACGTTTCAGA
GAAGCCAATGGAAAAGGACAAAATGCACTGTACCACATAAGCAAAGTGAG
TAACTGATTCCCTGTCATTGCCTTGCTTGTAAGAGAGATACAGTATGCCT
TTCAAACACAAGTTTATAGAAGTTTATCATGATCTACTTCGAAGGGATCG
ATGGAGCACACGGTTTGAACGTTTTGGTTTTAGCCGTTACTTAATACTTG
ATTTCAACAACTACTAACAAAATTTAGCCTGGATACACTCAATCAGCCTC
CTTGTGACTCTGGGGTTGATGGGTAAAGTTGTATTTATCCACAAGGGTCC
AGATTCTAGAATGCTCTGAAATGTTTTGACAATCGAAATGATTCATCCTA
TAGTTAAGTACTTTAGAAGGTTCCTAGACCAACCTTGAGTGATTTGCTAT
TGGGTGGGAGATTTCTCTCCTAGAAACTCTTTTCACCAAACAAAATTCCG
CTCACGTAAAATTGAGAGATGAGAAAACTGCGTCTTGAAATAATATTATT
GTGTCATTCGTTGCATATACTTGGCATTGCCATGTTAAAAATATGTATTC
TTGGCTTAAAATACGTCAACATAGAGCTTAAGAATTGGCAAACGGCCATG
TTGCTTAACACTCGTCGACCTATTTCATTGCAAAAAACAACAAAACAGCT
ATGCCGTCATCATGCTATTACGGGCTTTTGCAAAAACGGTAGCACGCTCA
GTTCTCTAAAATAAACATTTGGATTTAGCGATTTTACATCTCTTCTTTCC
GTGTTTGTTTTCCGATTTGAAACAATGTTGTGAACTTTGGTAATGATCGA
AAAAGTCTGTTAGAGGCACGTTTAATCCCTCGGTAAACAAAAACTTCCTA
TTTTTGTCAGATGTTTATCTTATAATGTGATCTATCCACTCCGCCTTTCA
AAGCAAATTTGTTGACTTTTTCCTCACTCACATGTTCGGCGTGATCGATT
TCTCCGTTTCTCTCTCAAAACAAACAATGGATGGAATTACATCCCAAAAT
GCCAATCATCTAAACATGATCTATGCAAAATGAAAATTTTATGTGTTTGC
TTGAAAAATTATAGGGATCATTGCTATTCTCTCTCATTGCGTTCAATTTT
AGGTCACGTTTCGGTCAAATGGCCAGTTCTCTTAGAAAACTTCTTTGACA
AATTACCTTCTGTCCAAACAGATTTATTTGGAAGATAATTATCCATTAGG
ATAATGAAAGCAAAACCATCAAGCTCCCCACTGCAAATCTCGAATATTTC
CTACCTTAGATTCACGCCACATAAAGTGTTAAAAGCCAAAGAATGAATGA
CATGGATCGGTATATCATGCCGAGAATCTTTCCCTCATGTTTTACATATT
AAGGCTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATG
CTCTATCCTACCAACACAAGAAAAAAAGTCCGTGTCCCATGGTTTCATTT
TTTGTTTCGTGGAACAAAAGGTGAGGAAAATACCCAAAAGACACGCTGAT
TTTGTCCCTGGCGCAATGGAGCAAAATTGATTACAAAAGTGAGATTTCAC
TTTTTCTGGTAGAAAGAAAAATGGGGTGGAAACACGAGAAAGCGTTTCAG
GTTGGTGGGATGGAGCATGCTGTATTACACCAACGCGAAAAAAACTTCTC
GTGTCCCCAAGCCTTTACCCTACAAACAATTTATTAAATATAAAACTTCT
TCAACTTTTCATTTTAGGCATATTCAAATTATGATGAAGAAGTTGCTTAT
TGTCAAGGACTATCGTTCATTATTGCAACATTCTTACTTCACGTACGAAA
AAATTCCATCCATCATTCCTCATACATCAGAGTCCTATTCCTTCTAAACC
TTAACCGATTTATCAATTAAATGCTATCGATTTTATTTACCCGTCAATAC
TGAGTTTGGCTGAACAGGATCTATGTAAAAAACCTTCCTGATTTTCTTTG
CCCTTTTCACTAAACTAATCTATTAAAAGCTTTGAAGCTATAAATGCTTG
AAGCTGCATTGCGCTTTACTAGCATTTTCTTCCAATATCAAAAATTTGTT
ATTGCTTTTTTCGGTATCTTTTTTTACTCTTAGGTTGAAGAGAAAGAAGC
TTATTCACTATTGGTCAAAATGATGTATGATTATGGTTTACGTGATTTGT
TCAACAATGGATTCGCCTCTTTACATCAATATTTCTTCGTACTCGACCGC
ATTCTGGAGGTTTGTACTCTTCATATTCATGATATGTACCATTGCAATGT
CTTCCACGGACCCAACAGCTGATTGGTTGAAAGTGACGTATTGACTGATT
TTACGTCATTTACAACCAATCATCTGTTGGGTCCGTGGAAGACATTGCAA
TGGTGCTTATCATGAATTCTATTAGTTATACGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037311XLOC_037311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059257-exon-scaffold_320-1575043694:247835..247927TCONS_00059257-exon-scaffold_320-1575043694:247835..247927Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:245724..245950TCONS_00059257-exon-scaffold_320-1575043694:245724..245950Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:245199..245353TCONS_00059257-exon-scaffold_320-1575043694:245199..245353Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:244507..244608TCONS_00059257-exon-scaffold_320-1575043694:244507..244608Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:243533..243646TCONS_00059257-exon-scaffold_320-1575043694:243533..243646Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:241786..241860TCONS_00059257-exon-scaffold_320-1575043694:241786..241860Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1575043694:241192..241494TCONS_00059257-exon-scaffold_320-1575043694:241192..241494Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:247835..247927TCONS_00059257-exon-scaffold_320-1510915933:247835..247927Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:245724..245950TCONS_00059257-exon-scaffold_320-1510915933:245724..245950Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:245199..245353TCONS_00059257-exon-scaffold_320-1510915933:245199..245353Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:244507..244608TCONS_00059257-exon-scaffold_320-1510915933:244507..244608Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:243533..243646TCONS_00059257-exon-scaffold_320-1510915933:243533..243646Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:241786..241860TCONS_00059257-exon-scaffold_320-1510915933:241786..241860Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1510915933:241192..241494TCONS_00059257-exon-scaffold_320-1510915933:241192..241494Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:247835..247927TCONS_00059257-exon-scaffold_320-1491911889:247835..247927Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:245724..245950TCONS_00059257-exon-scaffold_320-1491911889:245724..245950Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:245199..245353TCONS_00059257-exon-scaffold_320-1491911889:245199..245353Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:244507..244608TCONS_00059257-exon-scaffold_320-1491911889:244507..244608Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:243533..243646TCONS_00059257-exon-scaffold_320-1491911889:243533..243646Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:241786..241860TCONS_00059257-exon-scaffold_320-1491911889:241786..241860Clytia hemisphaericaexon
TCONS_00059257-exon-scaffold_320-1491911889:241192..241494TCONS_00059257-exon-scaffold_320-1491911889:241192..241494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:241192..247927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131936	0.288739	0	0	5.55711	8.854	10.2508	9.4871	5.13022	8.68742	5.73526	2.77806	3.35228	5.77637	2.38361	3.83707	7.47788	5.92806	12.7321	15.4604	8.16595	9.67798	4.22723	4.60818	0	1.72847	0	3.66127	73.0575	64.3369
Blast
[Close]
BLAST of TCONS_00059257 vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 6.807e-54
Identity = 89/194 (45.88%), Postives = 132/194 (68.04%), Query Frame = 2 
Query:  347 LLSGSGEFERSYSEGELDNWKEILDKW-TDFNTKPSKLTQCIRRGNLPNAVRGDVWQRLSGNEKDDEINRSYEVLFNKDSQQEQVILWDVTRTFPAHERFREANGKGQNALYHISKAYSNYDEEVAYCQGLSFIIATFLLHVEEKEAYSLLVKMMYDYGLRDLFNNGFASLHQYFFVLDRILEVCTLHIHDMYH 925
            LLSGSG+  +  +E  L+ W E+L KW  + N +P +L+  +R G +P A+RG+VWQ L+G   +D +   Y +L  K+S Q+  I  D+ RTFPAH+ F++  G GQ++LY I KAYS YDEE+ YCQG SF+ A  LLH+ E++A+S+LVK+M+DYGLR+LF   F  LH  F+ L+R+++    +I D+Y+
Sbjct:  522 LLSGSGDVSKECAEKILETWGELLSKWHLNLNVRPKQLSSLVRNG-VPEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQE---YIPDLYN 711
The following BLAST results are available for this feature:
BLAST of TCONS_00059257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBGP16.807e-5445.88Rab GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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