TCONS_00059255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059255
Unique NameTCONS_00059255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059255 ID=TCONS_00059255|Name=TCONS_00059255|organism=Clytia hemisphaerica|type=transcript|length=1229bp
TAAACGATTTATATCAGCATTTCCAGAACAACAACATCGAGTCCCACATG
TATGCTTCACAATGGTTCTTGACCTTATTCACAGCCAAGTTTCCGCTTTC
CCTGGTTTTCAATATCATTGATATCATCTTTTGTGAGGACCTTGATTCAA
TTTTCCAAATAGCTGCTGCACTTCTAAAGACAGCACGGAAGGATTTACTA
CAATTGGATTTCGAAGGGATATTAAAATACTTTCGTATCAACATGCCAAA
ATATTACATGTTGGAACCACACAGAAAAGATCTTGTCAAAACTATCTACG
ATATTAAGATTTCCAAGAAGAAGGTGACCAAGTACAAACAAGAATACGTT
CAAATGAAGGAAGAACAAGAACTAAAAGAAGACCCTGTGGAAAGATTAAA
GAGAGAAAATGGTGAACTTCAAATGGAGAAATTACGCTTAGAACGTGAGA
ATGACAGTTTAGCATACGAAGTTGTCACAACTCAAGTCTCAATGCAAGAA
ATCATCACTGATAGAGAAGAGAAATTGAACGAGATGATTAAAGAAACGGA
ACAATTACGTAATCATTTAACTGACGCCGAAGAAGAAGCGGAAAGACTGA
AAGTTGAAGAAGCAAGGGTCAAAGACATGTGGCGTGATAGCATGAGACAG
GCTGATGAAAATAAAGCAAAACTAAATCGAATCATTGATGATTATAAACA
GATTTTGGCTCGACTAGAAGAACGCAACGAAAAATTAAAACGAGATTTCA
CTGCTGAAACAGAACTGCTGAAGAAACAGTTATCAACGTGCGAGAACTGT
ACGAACGCTTTGATGAAAAACATTTATCCAGACGAGGATGACAAGGGCGG
ACCGAGAGAACCAACCATCACTAAATTACTCTCCAAAGAGGATCACGAAG
AACAGATGCGTAGCTTAGAAGAAGAGCTCATTAAAACAAAAGTCGCACTG
GCGGAAGAAAAAAATCGCGCGGACGAAATCGAAATGAAATTACACAATTT
GATGAGTGCGAACGAGAAGCCGTGGTATAAGAAGGTAACTGTGATTAAAA
AATAGTAttgttttggaaatttgtttgtttgtttgttgtttgaaATTAGT
TGtatataattattataaatagCTCTCTAACTCTCCTATTataaaatgtt
atcaaaattGCTGCTTCGATAGAAGTTTAGTTTTTCTCGTGTAGCAAATC
TTTGGTTTTTGTTACTCAGAGCATATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_320:236141..240649-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059255 ID=TCONS_00059255|Name=TCONS_00059255|organism=Clytia hemisphaerica|type=transcript|length=4509bp|location=Sequence derived from alignment at scaffold_320:236141..240649- (Clytia hemisphaerica)
TAAACGATTTATATCAGCATTTCCAGAACAACAACATCGAGTCCCACATG
TATGCTTCACAATGGTTCTTGACCTTATTCACAGCCAAGTTTCCGCTTTC
CCTGGTTTTCAATATCATTGATATCATCTTTTGTGAGGTATGTACGCTTA
AACCTGTTACAATGCGATTTCCTTTTCATGTTAACCCGGCATTGTACAGT
GGAGTCTCTTTGATCCGAACCTTTAGATCTCAAGTTTTCTAGTCCTTTCA
GTTAACAATGCCTTATAAACCTTACTTCATAACTCGAAAATCTCCTTAAC
TCGAACAAACTTGCGTTTTCCGTGCGTGTTAGAGTTTTGGAGACTCTACT
GTAGCACCCCTTTAACTTGATATTGATCTAGGTGCAAATTATTTGAACTT
TTTTCCGTGCAACCTTTTCCCTGGATTGTATTGGATTAGACATTATTCTG
ATTTAAATAATTTCACCGCTTGTTTATTTTCAGGACCTTGATTCAATTTT
CCAAATAGCTGCTGCACTTCTAAAGGTAAATTCAAGTATGCATGTGACGT
ATCTTTCCGCGAAACTCGGTTTAACTTTATCTATTACTTACTGGTAGACA
ATGTTCTAGTCAAAAATGTCGTCAAAAACCGTCAAAAGTTAGCCACGGCG
TTTTGATTCTTAACCTAGTCTAGCTCACTGGACATATAATTTACTCGTTT
TCCGCTATTTTTCTTGGTTACAATCTTCTATCTTTCTAATTTTCAGACAG
CACGGAAGGATTTACTACAATTGGATTTCGAAGGGATATTAAAATACTTT
CGTATCAACATGCCAAAATATTACATGTTGGAACCACACAGAAAAGATCT
TGTCAAAACTATCTACGATATTAAGGTATCATTTGTTAGAGCTCTGATAA
AAATCCTACACGATTCAAGCAAACGTTATGAATCCGGCAAATTATTAAGA
TTTGTCGAAGATCACAAGGTTTTCTTACTTTACACTAAGGCTATTATACA
GTGAACTTTCCAATTGGGTCTTAAAGGTATTAAGGTTGTTTTTTTTGAAT
CGGAAAAATGTTATCTCTTGTAGAGCTTCTTGGCTGAAGGTACCATAGAT
TTAGTTCGAGCTACAAGAAGGCTTGAAGCAGATTAAAATTAGAAAAAATC
AACTGTGTACCCTGATTTAGGATCACCATATACCCAAACTAATTGTCTGA
AATGCAGACCTCTATAGATATACTTCCTATACAAAAAACTCTTTTCGCTA
GAGCATGAGCAGAAGCCTGCCGTGCATGTGACGTTGTTTGGAGGGCGTTG
TAATCTTTTAGATTACCTTTGCCCATTGTGGATTTTGTTATAAACAACTT
GGTTTCTGTATTCAGCTTACTGAAGATTAAAGAATTTTTATGCTAAAAAA
GCATAAGCAGAAGCCTGCCAAACTAACTTCTAAACAAGTTTCCATTAATC
TAATAAAATTCATTTCATCCATGGGGACGAGATGGAGTTTTTACAAGCTC
TTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATAAAGAAGGCG
TCATTTTTGTCCATCCATATCCATCCATCATGATTTCTCCCTCATTCATT
AGATTTCCAAGAAGAAGGTGACCAAGTACAAACAAGAATACGTTCAAATG
AAGGAAGAACAAGAACTAAAAGAAGACCCTGTGGAAAGATTAAAGGTTAG
ATTTGATATTGCTGCTTTCACTCTGGGATAAAGTCTCGTTACTTTGGTAT
CATTATTCCACTAAAAGATTGAAAATGAAAGTTTTTGATCCCGCAACGCC
CTTTCAACGCCCTTTTGAAGGGCAGAACTATGCCTCAAAAAAGTTATCTT
TGCCTTCAATAGTGTAGGGATGCCGGGCTGAGATTTGTATCCTATTCTAC
TCCTAATAGAGTCCCGGTACCAGTGTCTCTAATACTATTAACCAGTAATG
ATAATGCCAGATAACGTCGAGTTGATTATTGTGAGGCATTATTAAAAACC
TTAGTTCTATCCATTTTAATATTTTTCATTCTTCCTATCTGTTTTAGAGA
GAAAATGGTGAACTTCAAATGGAGAAATTACGCTTAGAACGTGAGAATGA
CAGTTTAGCATACGAAGTTGTCACAACTCAAGTCTCAATGCAAGAAATCA
TCACTGATGTATACTTTTTGTTCATTTTTGGTCCTTTTGCGTCTTTCCTA
TTACATTTTTTCTAAATTCTTTTTTCTTGGCATTACTCGTTAAAGTCGCC
ACATTTAGCCTTTTTTCAAAAGGAAACCGCCCTGGAATTTGGGTTCACTT
AAGGTGTTTTAGATTGGCTTTTTATCTTTGGACTTGAAATCTGTATATAG
CTCCCTACAGTTGACTTTCTCTCCCTCTCTGATCTCTATCATCCGAATCT
TTCTGTAATCCAAGCTAGTACATTGGTCACCTGACCTGGAAATTCGTATA
AATTACTCTCCGTAATGATAATCTTTCCCTAATTCGAACAAGAAAGTTTG
GCCCCTTGAAGCCTTTTGGATTTCTGACCTCGATTTTGTTTTCATTTTCC
GCAGAGAGAAGAGAAATTGAACGAGATGATTAAAGAAACGGAACAATTAC
GTAATCATTTAACTGACGCCGAAGAAGAAGCGGAAAGACTGAAAGTTGAA
GAAGCAAGGGTATAAAAGTTGTTTTGTGTTTTGTTTGTTATCTTTTTCAG
ATATTTTCGCTGTTCCTATTACCAAGAATGGTCTTAAGTGTTGGACCGGC
ATGATTTTGAAACAATTTACACTTGATCTTTATCAGTTTGATGTTGTTTC
AAGGATTTTGTTGCCTAGGTTATATAACCTAGTTATCCACGAGCTGATAT
TTTTGGTGCTTACAATTTGACTTATAGAGACATTTTCTTGACCATAATTT
ACATAATAAACTTGTTTCATTCATTCATTCAATCATTCGTTCATTCATTC
AATCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT
TCGAGCGGTAACAATAATGGTTTATTATTTTTCTTTCATATTCAGGTCAA
AGACATGTGGCGTGATAGCATGAGACAGGCTGATGAAAATAAAGCAAAAC
TAAATCGAATCATTGATGATTATAAACAGGTACTATTATAGCCTGTCTAC
GTTTATTCTTACTCATTCTTCTTTTGTTTTAATCCCTCACCCCTACCAGT
CGACAAAACTATGTGATATCGAAATACTAAAATTGGTTGGCAGTGTTGCC
CAAAATATTCCGAACTGATTCGAAAACAACTATAACACTGAAAAAATGGT
TCACCAAAAGCTCCTGCATGTTGTGATGGTAAATGTTTGCATATTTTTAC
ATAATTTCAGACTCCCTCAATCCCCGAGTTTTCCAGGGTTTTCAGGTACA
CCTTTACAGATATATGACCTTCCCAATATGAGGGGTTTTACTTGAGCCCA
GTCGTAGGGATGCTTGAGAATGGCTTCTGTTTCCATTGCTAAGTCTCACG
TTTTACGTATACTTCATTTCCCTACTTTAGATTTTGGCTCGACTAGAAGA
ACGCAACGAAAAATTAAAACGAGATTTCACTGCTGAAACAGAACTGCTGA
AGGTAAGGAGAAATGAAATAGGTCCATAGTTTATCCTATATTTCGATCTC
AACAAAGCCTTCTTCTATCAAAATCTATCATTTTCATTTGAAAAAAAAAT
TGATTTGAACCGAGATCATGAGACGTAGGTCCAGCAGCGTTTTGCTTACT
TTTGTTTGAGACTGTTTTCTGGCTTCATTTCTCATTTTGGAAAAATATGA
TAGACATTTTATTCTCAGTGTAAAGAGATTTTTCAAGTTGGCTAAACATA
CAAAATTATCAGTATCAATCTTCATAAGGAATCGTTTCTTCAAAATCGAA
TGTTTTCATCAATAATGAGGGGTTTTCCTGTATGTAACACAACCTTGCTC
TATTATAGACCTCTATTATAGAATCAGGTCAAATTTGGGAAATTCTTAAC
TTTCACCATTGTTCATGGCACTTTTTCAATGATTCTTCCAATCTTCTTTA
TAGAAACAGTTATCAACGTGCGAGAACTGTACGAACGCTTTGATGAAAAA
CATTTATCCAGACGAGGATGACAAGGGCGGACCGAGAGAACCAACCATCA
CTAAATTACTCTCCAAAGAGGATCACGAAGAACAGATGCGTAGCTTAGAA
GAAGAGCTCATTAAAACAAAAGTCGCACTGGCGGAAGAAAAAAATCGCGC
GGACGAAATCGAAATGAAATTACACAATTTGATGAGTGCGAACGAGAAGC
CGTGGTATAAGAAGGTAACTGTGATTAAAAAATAGTATTGTTTTGGAAAT
TTGTTTGTTTGTTTGTTGTTTGAAATTAGTTGTATATAATTATTATAAAT
AGCTCTCTAACTCTCCTATTATAAAATGTTATCAAAATTGCTGCTTCGAT
AGAAGTTTAGTTTTTCTCGTGTAGCAAATCTTTGGTTTTTGTTACTCAGA
GCATATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037310XLOC_037310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059255-exon-scaffold_320-1575043694:240513..240649TCONS_00059255-exon-scaffold_320-1575043694:240513..240649Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:240125..240166TCONS_00059255-exon-scaffold_320-1575043694:240125..240166Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:239775..239903TCONS_00059255-exon-scaffold_320-1575043694:239775..239903Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:238955..239047TCONS_00059255-exon-scaffold_320-1575043694:238955..239047Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:238492..238602TCONS_00059255-exon-scaffold_320-1575043694:238492..238602Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:237991..238095TCONS_00059255-exon-scaffold_320-1575043694:237991..238095Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:237521..237604TCONS_00059255-exon-scaffold_320-1575043694:237521..237604Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:237048..237119TCONS_00059255-exon-scaffold_320-1575043694:237048..237119Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1575043694:236141..236596TCONS_00059255-exon-scaffold_320-1575043694:236141..236596Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:240513..240649TCONS_00059255-exon-scaffold_320-1510915933:240513..240649Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:240125..240166TCONS_00059255-exon-scaffold_320-1510915933:240125..240166Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:239775..239903TCONS_00059255-exon-scaffold_320-1510915933:239775..239903Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:238955..239047TCONS_00059255-exon-scaffold_320-1510915933:238955..239047Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:238492..238602TCONS_00059255-exon-scaffold_320-1510915933:238492..238602Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:237991..238095TCONS_00059255-exon-scaffold_320-1510915933:237991..238095Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:237521..237604TCONS_00059255-exon-scaffold_320-1510915933:237521..237604Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:237048..237119TCONS_00059255-exon-scaffold_320-1510915933:237048..237119Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1510915933:236141..236596TCONS_00059255-exon-scaffold_320-1510915933:236141..236596Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:240513..240649TCONS_00059255-exon-scaffold_320-1491911889:240513..240649Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:240125..240166TCONS_00059255-exon-scaffold_320-1491911889:240125..240166Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:239775..239903TCONS_00059255-exon-scaffold_320-1491911889:239775..239903Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:238955..239047TCONS_00059255-exon-scaffold_320-1491911889:238955..239047Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:238492..238602TCONS_00059255-exon-scaffold_320-1491911889:238492..238602Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:237991..238095TCONS_00059255-exon-scaffold_320-1491911889:237991..238095Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:237521..237604TCONS_00059255-exon-scaffold_320-1491911889:237521..237604Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:237048..237119TCONS_00059255-exon-scaffold_320-1491911889:237048..237119Clytia hemisphaericaexon
TCONS_00059255-exon-scaffold_320-1491911889:236141..236596TCONS_00059255-exon-scaffold_320-1491911889:236141..236596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:236141..240649 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.09793	6.4487	2.96383	1.79033	35.6083	27.2583	30.5824	32.7311	19.5927	23.8046	16.0122	14.3806	17.0834	14.9292	12.4509	15.4324	27.1608	34.653	27.7301	32.0599	31.4841	33.2785	23.4549	25.405	30.8644	39.2808	31.7863	19.109	100.063	88.5935
Blast
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BLAST of TCONS_00059255 vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.444e-61
Identity = 147/354 (41.53%), Postives = 225/354 (63.56%), Query Frame = 3 
Query:    6 DLYQHFQNNNIESHMYASQWFLTLFTAKFPLSLVFNIIDIIFCEDLDSIFQIAAALLKTARKDLLQLDFEGILKYFRINMPKYYMLEPHRKDLVKTIYDIXXXXXXXXXXXQEYVQMKEEQELKEDPVERLKRENGELQMEKLRLERENDSLAYEVVTTQVSMQEIITDREEKLNEMIKETEQLRNHLTDXXXXXXXXXXXXXXXKDMWRDSMRQADENKAKLNRIIDDYKQILARLEERNEKLKRDFTAETELLKKQLSTCENCTNALMKNIYPDEDDKGGPREPTITKLLSKEDHEE-------QMRSLEEELIKTKVALAEEKNRADEIEMKLH---NLMSANEKPWYKKV 1037
            DLY HF + ++E+HMYASQWFLTLFTAKFPL +VF+IID++ CE +  IF +A  LLKT++ DLL  DFEG LK+FR+ +PK Y  E + K L++   ++KIS+KK+ KY++EY  M+E+Q  +EDP+ER +REN  LQ   +RLE+END LA+E+VT+++++++ + + EEK + + KE    +  L DAEEE  RL+ E A++K+M R  + +A+    K + II DYKQI ++L ER EK +     E E +++++  CE C     K        +G  +  + TK +  ED +E       Q+R +E EL +TK+ L E + +  ++E  L    N + A +K W+ + 
Sbjct:  708 DLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESAQLKEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERCREFFNK--------EGRVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALNEVQAAKKTWFNRT 1053
The following BLAST results are available for this feature:
BLAST of TCONS_00059255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBGP11.444e-6141.53Rab GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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