TCONS_00059222 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059222
Unique Name	TCONS_00059222
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	886

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_32:29320..42914+
coding sequence from alignment at scaffold_32:29320..42914+

transcript sequence

>TCONS_00059222 ID=TCONS_00059222|Name=TCONS_00059222|organism=Clytia hemisphaerica|type=transcript|length=886bp
tttcGAACTAAAAATGCTAGACCGGCTtgctaaaaaaaaatagaagagTT
TGTGGACTGAAAGCTGAGGTGAAACAGAAAAATTTATAACtttagaattg
aaaaaaaaaacgaagatttttgatttcttcttcAACTTTAACAATAGGAC
ATTGGTCAGTATAGTTTCTTGGATGTCTCAATCGCTCACACATAAATATC
CAATGATAATTtctaacaaaaagaaaaagagATGTCAACAAAGAATATCA
CCAAGCTGTTTGATTTCTGTCGCACTGGAAATTTGTTTGATTTAAAgAAC
ATAGTGGAAGCAGAAGAAGTTGATGTCAACGTAAGAGACAAATGGGACAG
TACTCCACTGTATTATGCGTGTTTATGTGGTCATGAGAAACTGGTGGAAT
ATTTGTTACAAAAAGGTGCAAAGTGTGCTGCCAATACTTTCGATGGTGAA
AGATGTTTATATTCTGCTTTGacgcaaaatatcaaaaagatgTTAAAAGA
TTACAAAGCAATATCCAAAGATTGTATACGAAGAAATGCATatgtggaat
ttttcaaaagATGTTTATCTGAGCATACGTATAAAGATGTTTGCTTCACA
GTTCACGGTGTCAATTTCTTTGCCCACCGATTGGTTCTGTCCGTTCGTTC
ACCTTACTTCGCTCACATGTTCACCACAAaatggaaagaaagaaacaaca
TTCGAATCAATAACCAAAAGGTCACGACGAAGGCCTTTGAGTTACTCATC
CAATACATCTATACTGATCGTATGGAAATTCCCGTGGAAGAGCTCGATGA
TATCAAGATATTGTTGAAACAATGTTATTTGTTCCAAGCTGCTGAAAAAG
TCGAACGAATGGAAAAGGAATTCAACTTTTATTGTA

Run BLAST on NCBI

protein sequence of TCONS_00059222-protein

>TCONS_00059222-protein ID=TCONS_00059222-protein|Name=TCONS_00059222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MSTKNITKLFDFCRTGNLFDLKNIVEAEEVDVNVRDKWDSTPLYYACLCG
HEKLVEYLLQKGAKCAANTFDGERCLYSALTQNIKKMLKDYKAISKDCIR
RNAYVEFFKRCLSEHTYKDVCFTVHGVNFFAHRLVLSVRSPYFAHMFTTK
WKERNNIRINNQKVTTKAFELLIQYIYTDRMEIPVEELDDIKILLKQCYL
FQAAEKVERMEKEFNFYC

Run BLAST on NCBI

transcript from alignment at scaffold_32:29320..42914+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059222 ID=TCONS_00059222|Name=TCONS_00059222|organism=Clytia hemisphaerica|type=transcript|length=13595bp|location=Sequence derived from alignment at scaffold_32:29320..42914+ (Clytia hemisphaerica)
tttcGAACTAAAAATGCTAGACCGGCTtgctaaaaaaaaatagaagagTT
TGTGGACTGAAAGCTGAGGTGAAACAGAAAAATTTATAACtttagaattg
aaaaaaaaaacgaagatttttgatttcttcttcAACTTTAACAATAGGAC
ATTGGTCAGTATAGTTTCTTGGATGTCTCAATCGCTCACACATAAATATC
CAATGATAATTtctaacaaaaagaaaaagaggtgAGTCTACAATTAATTT
GTTCATTGACATTGTTTAAGTTAATTGGTTTTAGGGAAGGCCTCTGTGAT
AAGACCTTTTGTTGGGTTAATGTCATTGAGTAATCAAAAGCTCTGGCATT
ACAAGGATAACACATGAATGCACGATAGActttttcgcctttccatctgc
catcTATTAACCCAGGCGtaaatcttgagtaatcgataaataatcgataa
gtaatcgatggattagatatcaattaaccgatagaatcgataggtaatca
gatcttcaaaaaatcttgagtatcgatcagcaatcgattatttccaagct
atcgatcacttatcgatcacatatcgactacagacaacctatcgattact
tatcaatcatgtatcgattgttaacaatcatcgattacttatcgttcatg
cattgattacttatcaatagacctttttttaaagaggcagcaatattgaa
taattatggactccagcataaaaacaatgatacagccatgcataattact
ctatcatgcatattttaaaaattatgcatggctgtatcattgtttttatg
ctggagtacataattattcaacatggctgcctctttaaaaaaaagtctat
tatttacttatcttcgatCACGTATCGTTATCGGTTATATATCGATTGTG
ACCGACTATTGACTACATTAcgggccctttttacgccggcccttattcca
ccaacgagcccaaaaataacgctaataaggtccggcgtaaaaagggccaa
gataaggtatttaatgaagtaaagaaaatttctggaattcgcCAAATCTC
ATACATATCGTATTACTTGGAATAAACGCCCGCTTTGGAATTAATAATGC
Tcctccaaaaaggcaaaccattcaataacgccccttctctaaataaaacg
gtaaccttgttttttttttaacttttttttgttcagcctttcagagggtt
tgagaatgcttcagccaaaatttactgtatgtataaaaaaaatgagtgta
gtagcttttctaggccctatgctaccaggggattggattcaattcaaaag
tacatcccAATCGAGATCAGCGAAAAATGTTGcttttaatttcgcgaaaa
tgacgaaaattcgagaaatcgagaaatttaatctcgcgaaggcgaaagtt
aatccaatacaccgtttaacagtctcgccatctccaccgtaggggcggta
ggtaaaaatgctcactttagtactgtagaaggttagagaaatgtaaacat
tgccattttttctttcctttagaGAGAataatttagatatttgaacatga
tatcaatgataattttatggatctctcctgaaaatttcacaaaaattgat
ccagaggaaaagaagttatgattaaaaggagttctttacctaccatttct
ctgctgggttttcttatgagaactggatgtttacctaccattttttacgg
gggagagtgaagtttcccgtggttgccaaaatcaaaacaattcaaaattg
ttcatacgcgtgcgcagtcgacactgttaaacggtgtaatAAAGTACCAA
tccctaaaatctgataaataatcgatcacgaatcgatagttgatcaatta
actatttgatcgatgattaatcaatttttgattgatATGTAATCGATAgc
cgatcgatttttaatcgatacttaatttaatcgaagtataatcgatctat
aatcaataaacaatcaatgacaaaattgatcgataaataatcgagcttag
gaaaaatcttgagtatcgatcaccTATCggttctatcggttaatcgatat
ctaatccatcgattacttatcaattatttatcgattactcaagattatcg
attatatcgattaactacgcctggattaccagacgatgtcaatcgaacga
atcgaacgccgaatcaattgaacgcaatcgaacgcaatcgaatgattgaa
attcgattgccgaacgcaatcgaatgccaatcgaatattatcgtgatttt
ctcgattgattcgattgcgttcgattagtgccgggattcgattgattcga
ttgattcgactgTGTTCGATTGATTCGTTTGCGTTCGATTGACTAATGTA
TTCGATGGATTCGACTACGTTCGATTGGCTTAtgcattcgactggttcga
ctaattgattctgttgattaacGTTGATTCTCGTTCAACATTTGAAGCGT
TAAACAAGATGATATGAATCGAAGAAAAGACGGCTGTNTTCAACATTTGA
AGCGTTAAACAAGATGATATGAATCGAAGAAAAGACGGCTGTATGTCACG
TTGCCCGCAAAATCTATGATGGCTGTTTGGCCGGTTCGCGATTTCTGTAT
CACCttgaaaggaattgaggtaAATTGGAATCTAATTATATCGACCACCC
GTGGAACGcagtcgaacgtaatcaaacatcaatcgaacgtaatcgaacat
caatctaacataatcaaatatcaatcgaacgtaatcaaatatcaatcgaa
tgtaatcgcatatcaatcgaacgtaatctaatatcaatcgaacgtaatcg
aatatcaatcgaatcaatcgaattttacccataattttacgttcgattga
tattcgattgcgttcgattgcgttcgattgattcgattggaattttcgtt
cgattccgttcgattgacatcgtctggctATTAAAATTGCTGATTTCAAA
TTGAGTTTATGTACCATGCCAGGTCAGGTGATGTCAACTGAACCTTATCG
AATCGATTTTCGTAATCAAACCATTGAATGAACACAGTCAAAAATAAAGG
GGGGTTTTGTGACATTTCTACCTCCTGTCATATCTGATACCATATCTGGT
GGAATTTTGAGGTTAccatatcaaaactttgaagAACTCAAGTATAGAAA
TTTCTCGTTGTTTTAGAAGAAACACANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATCCTGTGTTAAGCTAAAGCTAATAAGGCTATTAATCAAAG
ATCAATATTATTTGTTTTGCATGACTATAACATCAAATCATAAACTAAAT
CACATCTCAAGATAGATTATTAGAATTAGAAGAAATCAgaatctttaaaa
ttcaaattttgatggttttttgagGTTACTACAATCCACCGAAAAGTAAC
CtcaaaaatcacaccaaatcttcaatatttttcgcactttttttgaCCAA
GTGTTGCCATGTCAGTATAGAGTATGCTCTCAAGTTTTTAGAGGTTAAAa
tagtttttactaaaagatgTGGTGTTTCAAAGGTTACCCTACTATAAAAA
TGATGGTAACCTCAAAAATACGCCATAAAATcttctgaaaaatttatgaC
AATACCGTGCTAAGACATCGACCCtgggtgtaaaatttcaaagcctaaaa
atgattatttaagattttattctaaatttaccaaaaagagcaattttttg
actttccaaaaatgtcacacaatttttgactgTGTTCGAATTTcatcaaa
caaaatcaaatgaTAGGTGTTCAATTACCCAACCTGATCAaacagtaatc
gaactttaccgGAAAATCTTCAGTTCAATTACTTATCgcagttcgattaa
gttcgatcagtgtttttgtagctcaaatggttccagTTATTGCTAGCGCA
ACAGCTCTAGCCTAAACGACTCCCAACAACCAGTCAGGcgcatcctggca
aatgaacggggtgagcatttgcatggggtattcgtcacccagtgcaaatg
agataggacgtctggggctaaaagcgtgaaaatgaataaaaatgaacttc
aaactgaaaacgggaaaaaaggaagaaaaccgggaactttatttttttgt
taaaagtttcttcaatcttcgaagaaaaaattgacccatggaaaaaaaaa
ttcatctatgcggttcttcaaaatgaagaaaaatatttccaacccggtta
aATTACTTACTTGGAATACTTGGAAGTGCTTTCGATGTTCTTCCATCTAG
GTGAACAATCCAATGTCGGCCTGCGGattattgatttgatgtttgattaA
GTTGGATGCAGCATTTGTTGTTGCACCTAGAACAGAAGGTTCATCCCGAA
CAGAAACAAGGAACTTGTCTAGCTTCTTTTTGAATTCTAGCACAGGGCAT
CCACTTAAATTCCTCAATTCTTTAGGGAGGGAGTTGAACAAGATTGGCCC
ACGGGTTGATAAGAAATTATGTCGGATTGACTGTAGGGCAACTGATGCTC
CTGTGATTCGGGCTTTCACAAAGCACAATCTTCCAAGTCTGGGTTGGAAA
ACAGGTCGTAACCCGTCTGACTGATTGATATTAGGCACAAGGTTTTCAAG
GATCTTCCACGTGTAGATGATCATGTATCTTTCACGTCTTCTTTCTAGCG
AATAAAGGCTGAATGCCTTCAATCTTGACCAGTATGATTTTTCGGGGTGA
ATGATTTTTCGAATGAAGCTCCACTGGACCATTTCAAGACTTTGTATATC
ACATTTTAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGTGTAGTGTGTTTCAGCTTTAACTTCAGTGT
TTGGGCCATATCTCAGCAGCTCAAACTTGACAGCATTAAACTCCATGTTA
TTATCATCTGACCATACATAGACTGCGTGGGGTATTAAGcgctattacat
cacttttgttttcgaccccttgcatttACTACcaatcgcaagtgaaaaat
accccgttcatttgccaggatgcgCCTGACTGACAATCATTGGATGAGCA
GAAAAGAGTTGTTCAAGCGCTCCGAGAATGATTTGTGAACAAAAACCGTA
AATCGAACACAttgaacatcaatcgaactattcaaattttaccggaattt
tgatttggtttggtAATTAAGTTCAAttgagttcgattagtttggtaATC
AGACAGTTTGATTGACATTGCCTggccaatagacctttttttaaagaggc
agccatgttgaataattatgtactccagcaccAGCATataaacaatgata
cagccatgcataatttttaaaatatgcatgatacagtaattatgcatggc
tgtatcattgtttttatgctggagtacataattattcaacatggctgcct
ctttaaaaaaaggtctatgctcGGATGATTTCATCGAAGGAAGCAATCGg
ctgattgaaatttgattaacaaaaacaattgaatctcaatcaaacggtcA
AATTCTATGTACTGTAATAAACCTTTTTTAAGGTCTATTAGTAAACATGT
GTACTAGATACTTtcttattattgttttgatggcTTGAGTTACCTTGAAT
ATACATGATCTATCATTTGTTTGTCATCACCTGACCTAAACAATCAATCA
GCGCACTGGAAAAATATTGTGCGAGGGTTAAAGCCGTTTATGGCTGCAGA
GGAACAGTGTTGCGGAAATGATGAATTAACGTACTTTAGATTGAGCCCCT
TCTAAATTTTTACCCGGGCACAGACAAAATTCCTGCgcgactttttattt
tctactcGGCTacttttcctttcttttgtaACAATTTATCTTAGACTACC
GTATAGGTAGGTATATTTATTTGAGGTGGGTCCACTGGTCGATTTATAAA
AGTTCTTTTTACATTTGGGTAAAATGAAAAGAGAAGAGCTAGAAGGCAAC
TCACGATTCTTAAGCTTATGATAGAACAAGAGGGACAATTAGACgttttg
atttgaagaaaaaagaattcttctttaaaatgataTTACAATTTTTTAGG
TTAGCaggttttgtttttctatttctatttctatctctatttggttgagt
tgcaggaggtaGCTCTCTAAGGCCTATTTTGGGAACTATATGTCCTGTCA
GCACCTtagactgactacccaattcccctcctCATGTAGCATGGGTTGAC
CAGGGGTAAGGTATGTTCACTTGCCTCGTTATCCACTGCAAGTAGGAATC
AAACCTTAGTAGCTTCTGCATTAGCCAAATTTGATGACCCCTATACCACA
ACACCTTTTGAGGTAAGGTCGGTCAGTTGAGGGCAAACTGGCATTTTTTA
GTACAGCCTAATGCTTATTCTTTAACTTTGggttttttgaaactttgtat
gtaATAAACACAACGAACGAGTCAAACATTGAAtcgaaatccaaattttg
aattcAGAATCAAtggttactcttaggtgccaaataaatggGGGGTTCCT
ATaaacggggggttggaaaattttttcaaattaaataaatgggggaacct
aattaccggggggttGCAAAACCTTACCTGGACCTTAAAAAAACCCttaa
aaggataaaaatagactaaatataggctttttagagtaaaataaggaact
ttccttttggtagctgggaattttttcaaaaatttataaacagggggggg
tcctaataaggtccgggaggagggttggaaaaaaatcgaaaaattaacaa
gcggggggggggctgtttatTTGGTACCTAAGAGTAgttttattatttca
aatttttgattttgttttgtaaagaattttgtcttttttattttgatgag
tGGCTTGAGCAGCAGCAAGGTTTTGGTAACCGTAACTGAGTTAAATAATC
TTAATCTACAAAATTACAacttagtagggggccaagcctggggttccgtg
acatcttttctacgacctagccatttttagtccatTCCAAAGAACAgaat
attacaagatatttttgagtggGGGGATGCGGATTAGGCCGAAAATAAGG
AGTAGGATAGGTatctgatagagcatgaaattctgtgcaaaaaattgtat
tacaacaactatCTGACTAAAACACGCAAAGAAATACAGCCcctttaaga
ccaactaacttgccagctctactgtgattttGTCTTGATCGCACTGACGT
CGGTATAtttttgaacttcaagcggctgtatttctttgtgtgttttagtc
ttgttgtaatacaattttaggaaaaaaaattaactgaCTTTTTCAGATGT
CAACAAAGAATATCACCAAGCTGTTTGATTTCTGTCGCACTGGAAATTTG
TTTGATTTAAAGTAAGTAACTTATACCTTGCATAGTAGCACCccccctga
gcttagggggggATAAAccattttgcttgattagggctgtatttttcaaa
aaatactgcgGGGCTACCTTGCTAGGGGGGGCTGAatgttgtgtaataga
actggcggcagagctgataggttgaagatattttaaattatgttaaaaat
ctaagctgtggggaaggttttatccctcttgaaaaaaaaaatttatcgag
aattttcaagcaaaatttctttgatattttgctttgtgaaggtgggggct
atgtttctagaatttagccagggctttttttgaaaaattctgggggctgg
acccctctgcacactatggtCTTGTAAAATAGAAGTCAGTCTGATTATCC
tcactcaaaattttagaattaaaaCTAAAGTTTCATCCttcatttctaaa
attttagagtccgGCGTACCTTGATTGTACCTAAACCCAGGGTTAGGTTG
GTGCTGGTTGGTGACTGTCTGTAAACTAAAATTATTGATCCACATTACTG
TATAGTTGGGCTTATTTCCACATCCCCTATCTCGTATCTTATTCTTTCAC
CCTTTCTCTTTCTTAATCTTTTAATTCTAATCAATTTGAGTATTAAAATT
CCATGAAATAGACCCAAGAACAACCAAAGATTTGTTAAAACTTGCCAGTA
AAACCATCAGAGCTTCGATATGGtgaagaattctgtttattcatgatatg
catcactgtAATGTCTTCACACCATAGGCCCaacaacagctgattggttg
ttaGTGACGTAAAATTAGTCAATaggtcacttgcaaccaatcagctgtta
ggtacggatgtaatgttagaagacattgcatatcaTGAAAACCCCAAAAA
AGGGGGCATCAGAAACAATATTATTCTTACAAAGAAGAAGAATTTTTGTA
GAAGAAGAATTCTTTTGGaaaaggcaactattgccttaacggggaATATT
TCCCGAATGGGAAGGTGAAAAACTTGTCCCTCTTGTAAAGGagggaaaat
aaataatattcaccaggtagttaagaaatccaccgggtaatcgcttctta
attctactttccccattcccaattaaaaacttccctatttggaaactttt
tctcgatcgggaaacaaaaatctactttgtttacaaaaattctatTTCCC
GTTCTGGAACGATGAAAAGTACTTGACCAAAACTGGAAACAGAAAagtta
tgaaattttcaatctggaaacagtttccttttcgggttattttcaccttc
ccgttcaGGAAATACTTCCCGTTAAGGCTCTAGTTGCCTTTTTCATGTAG
TGGTACCGATTGACAAGTGCGTCACAAATAatcacaattttgaaaaaaat
ttttttcttctcaggAACATAGTGGAAGCAGAAGAAGTTGATGTCAACGT
AAGAGACAAATGGGACAGTACTCCACTGTATGTTCATTTATACAAGATAC
TTATTTGTAGAGGACAAAGTAAAGTAGGAAAATATACTCGGAGTGGAATG
GTATAAACTCTAATAAAAGGGCCTTTTACTTTTTAAGATATTGTCAATAG
AATATTCTATTGTATAGCAATGTATAAGCAGTAAGAAGACTCAGAGCCAC
TTAGAATTATGTCATGTGAGCTTGCTTGAAGAATTGCTGTGCTAAAAACA
AATCTGAGCAGCAAAATAAAGTAGTTCTTGTggagtttttgaaatttcca
gatGTCTTCTACAAGCACTTAAATCTTTCCATATAATTTGATAATCTAAA
AGCAAGTGGGCGAAGTGTGTCAGGCCATATTTTAAAAAGGTAGGACAGCG
TCTGTTGATGTCCAAAAAGGACACTTTTTAGTATTTTCCGACtgaaaagg
ctgtttttaccaatattttagtgATTTCAGAAAGTGTGCAGCGTCTGGTA
ACCGGTCGCTGAAAGGGTATGGTAAATTGCCTGAGTGTATATGAAATATG
AATGACCGTTTCTTCATTCTCGTTTCAGGTATTATGCGTGTTTATGTGGT
CATGAGAAACTGGTGGAATATTTGTTACAAAAAGGTAAGCTTTCAATTTG
CTTATTctcatgatttttttaggtttttattgGCTACTCTATTTTTTGAT
GTCGTTTGGTTGGAgctgtttaatatttttttaaatataattattatatt
ttaagCCTCTATGATAAATGTGAACACTGACCGATGCAATGTATCCATAT
AAAATTAGCTGCACAGTGTACTAACTATTTAGATGCTTTCGTTGATAacc
ttttgttttttgtttgttattttgattttatctttaaccataaaaaaaaa
aaaaacttcagatAAAGAATTGATAcatgttttataagcatattttcTGG
GTCACCCGAATATTTTCTAGAAATGGTCCTTAGTTTTACTAACAATGATT
AGTAGAATTATTTTTCCCAACAGGTGCAAAGTGTGCTGCCAATACTTTCG
ATGGTGAAAGATGTTTATATTCTGCTTTGacgcaaaatatcaaaaagatg
TTAAAAGATTACAAAGCAATATCCAAAGATTGTATACGAAGAAATGCATa
tgtggaatttttcaaaaggtATCAAGTATATGTTCTCCTCATTAAACTTT
GCTGCCACGAGTCGGAGGTACACCAAAGACTCTCCTTTTCGATAGATGCT
TACGCGAATGTAGGGAGGGTGTCAATCTCGCTACTCTCCATGGATTAATC
CACTTgaattcaccaagtgttggattgttcacccactaatagggaacgtg
agctgggtttagaccgtcgtgagacaggttagttttaccctactgaTGAG
TACGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNagaggaaccgcagattcagacaattggcatttgcacttgcttgaaaag
gcaatggtgcgaagctaccatctgttggattatgactgaacgcctctaag
tcagaatccAAAACCCTAATCATTCTCTTTATTGCTTAGCACCAAGCAAT
TAGGGATTAAGCACAATTTTTTGTACCAAGTACGGAGTCTTTGACTTGGC
CGGGGATTGAATCCAAGACCTCGCGTACCGTAGCCGAATACTTTGCACTA
CGATTGTTATACAGACCCAAGAGGCACTCTATCTTGGAAATAACTGTACA
GATaagatttggccaaaatttagcaaaaattcaAACCGTATCGTGTATTA
CTGGTTCTTACAAAGGACCTCAAAAATCTTTTCTGATGCCCCTATGCTTA
AAACtcagtcttcaaaataaagggTCAAGAGTAAATGGAAAAATTCATGT
CTAAGAACAGGCCAGATATACGGGGACTACATTACAGAGACGCAGAGACG
GTACTACATTACTGTTAATGACAGATCACTATTGTTAGTGTACGAAATAC
CCGCACTCCCGAGCCGCAAATTCCATATTCTTTTGGTTTAAAATCATGAT
GTACCACTGCAATgatttcacgaaattatgcaacttttctgtttttgttc
cacccaatacgtcactttttctattgtttaagtgacgatTCTAAAAGGGG
TTTTAAGTGGAAGAttctaaaagttctcagaagactctccagtggtgcat
atcatgaattcctcCTTTTTTCCCTTTCAGATGTTTATCTGAGCATACGT
ATAAAGATGTTTGCTTCACAGTTCACGGTGTCAATTTCTTTGCCCACCGA
TTGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCACATGTTCACCACAAa
atggaaagaaagaaacaacaTTCGAATCAATAACCAAAAGGTGAAAAGTT
TATATCTCTGGTGATTTATAACACACTCGAGTGTTCAATTGTAACTAACG
ATGTTTTTCTCCGACTTTTCTTTAGCCCACCCTTTTTTCCTGATAAAGGG
ACCCTACTCTaacaaattttggttttaaTGATTTCATCGTTTTAATTTTG
CTCAAAAAGGTTCCGACCAATAAATTCGGTCAGTTATTGATAAGAGAATA
TAAGGAGGAATTTTATGGTATAATCTCGCCTCATGTATGGCCTCTCGTGT
GTCATCTTCATCGTGAACTTGGCACAATCATATTTCCACGTGTTTTAATT
TCACAAGATTAAtctatttcgcgggaattaattagCATGAAATGGGATTT
TCGTAGGCTAATAACCAGGTTACAAGTTAAACTGAAACTAATATACTTCT
TTTTGTTAGGTCACGACGAAGGCCTTTGAGTTACTCATCCAATACATCTA
TACTGGTAAGCTTTCTGGtggggtagctcagtcggtagagcattcgcctt
acaatctaagggttgtgggttcgatccccggtcaccgccaactcagcgga
tgagtagcttagattgggtaatctgatctaggcggtaagttactgggagc
tgagagtaggtgtggcgctccacctcagcattcgatctcccaggtctttt
gcaaatagaaaaggggatagactccctcactccgggtttcgccgacagcc
accaggtGAATATACTACTACTACTAAGCTTTCTAAATCATTGAGCTTTT
CCACTTCTTTAACTTTGttggctgaaaaaaatcacaataGAATCACCATA
CCTCGAACACGCACGTTGAATTGAAATTCGTTCGATTTATAGAGAATTGT
TTGGACGGGATTGTTACTAGAAGGCATCAAGAAGCTTGTCCGAGTGAAGG
AGACATTAAAGTCattagcgtggtggcagggggtgGCAGCGGATGTTCTT
caaaggggcgccgaaatacaaagggtgcaaaaagacgcctctaattacta
atttcggcgccccgttgctcttttacaccttagatatggcagttttcgtc
caaaaagagagaaattacccaaaaattttcgtgctcgcttcgctcgcgtt
actttttacttttcacAGGGGCCGCCAAAATCtaaatcttctaaaattgc
ctccccagtttacttgacccaccacgctactgattAGAGTTACAGAAAGG
TTCCAGTTATGGAGACTGTACTGTGTAATATAATACACGCGCAAGGTTAA
TGGGTTGATAATCCTTAGCGGGGCTTAATTCCAGGgcgaaaaagtgacgt
caacaTAGCTGTTTATACATGAAATTGGAATCTGATGTGATTATTGTATG
TCCCATGTTGGTATTTGTATCGggcttttcaataaaaaacctTATTATAA
TccatgttgaggaggtccaacctgtTGTGACATACCCCTCTTTGTAGCAT
CAACTATAAACGCTCCAACCTTGTGGAATTCTAGGCACTTACAAGACTGA
AAAAATTACATCTATGGAGGGTTGATGAATCCGACCTTCCAAAGTTTATC
GTTTAtcctaatacaccttttcgaccgtagccgccaattgccgcgcggca
TTGTCTACTTTATCACACTAAAatcgtcccagtccttttttaacacattt
ttctattgtctataggtgcgaaaaaaggactgagATGGTTTAAGTGGGat
aaaaatgcccgcgcggcaattggtagctacggtcgaaaagatgtattgtt
ttcaattttctttctttttcgtaaGATCGTATGGAAATTCCCGTGGAAGA
GCTCGATGATATCAAGATATTGTTGAAACAATGTTATTTGTTCCAAGCTG
CTGAAAAAGTCGAACGAATGGAAAAGGAATTCAACTTTTATTGTA

Coding sequence (CDS) from alignment at scaffold_32:29320..42914+

>TCONS_00059222 ID=TCONS_00059222|Name=TCONS_00059222|organism=Clytia hemisphaerica|type=CDS|length=4578bp|location=Sequence derived from alignment at scaffold_32:29320..42914+ (Clytia hemisphaerica)
ATGTCAACAAAGAATATCACCAAGCTGTTTGATTTCTGTCGCACTGGAAA
TTTGTTTGATTTAAAgAACATAGTGGAAGCAGAAGAAGTTGATGTCAACG
TAAGAGACAAATGGGACAGTACTCCACTGTATTATGCGTGTTTATGTGGT
CATGAGAAACTGGTGGAATATTTGTTACAAAAAGGTGCAAAGTGTGCTGC
CAATACTTTCGATGGTGAAAGATGTTTATATTCTGCTTTGacgcaaaata
tcaaaaagatgTTAAAAGATTACAAAGCAATATCCAAAGATTGTATACGA
AGAAATGCATatgtggaatttttcaaaagATGTTTATCTGAGCATACGTA
TAAAGATGTTTGCTTCACAGTTCACGGTGTCAATTTCTTTGCCCACCGAT
TGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCACATGTTCACCACAAaa
tggaaagaaagaaacaacaTTCGAATCAATAACCAAAAGGTCACGACGAA
GGCCTTTGAGTTACTCATCCAATACATCTATACTGATCGTATGGAAATTC
CCGTGGAAGAGCTCGATGATATCAAGATATTGTTGAAACAATGTTATTTG
TTCCAAGCTGCTGAAAAAGTCGAACGAATGGAAAAGGAATTCAACTTTTA
TTGTATGTCAACAAAGAATATCACCAAGCTGTTTGATTTCTGTCGCACTG
GAAATTTGTTTGATTTAAAgAACATAGTGGAAGCAGAAGAAGTTGATGTC
AACGTAAGAGACAAATGGGACAGTACTCCACTGTATTATGCGTGTTTATG
TGGTCATGAGAAACTGGTGGAATATTTGTTACAAAAAGGTGCAAAGTGTG
CTGCCAATACTTTCGATGGTGAAAGATGTTTATATTCTGCTTTGacgcaa
aatatcaaaaagatgTTAAAAGATTACAAAGCAATATCCAAAGATTGTAT
ACGAAGAAATGCATatgtggaatttttcaaaagATGTTTATCTGAGCATA
CGTATAAAGATGTTTGCTTCACAGTTCACGGTGTCAATTTCTTTGCCCAC
CGATTGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCACATGTTCACCAC
AAaatggaaagaaagaaacaacaTTCGAATCAATAACCAAAAGGTCACGA
CGAAGGCCTTTGAGTTACTCATCCAATACATCTATACTGATCGTATGGAA
ATTCCCGTGGAAGAGCTCGATGATATCAAGATATTGTTGAAACAATGTTA
TTTGTTCCAAGCTGCTGAAAAAGTCGAACGAATGGAAAAGGAATTCAACT
TTTATTGTATGTCAACAAAGAATATCACCAAGCTGTTTGATTTCTGTCGC
ACTGGAAATTTGTTTGATTTAAAgAACATAGTGGAAGCAGAAGAAGTTGA
TGTCAACGTAAGAGACAAATGGGACAGTACTCCACTGTATTATGCGTGTT
TATGTGGTCATGAGAAACTGGTGGAATATTTGTTACAAAAAGGTGCAAAG
TGTGCTGCCAATACTTTCGATGGTGAAAGATGTTTATATTCTGCTTTGac
gcaaaatatcaaaaagatgTTAAAAGATTACAAAGCAATATCCAAAGATT
GTATACGAAGAAATGCATatgtggaatttttcaaaagATGTTTATCTGAG
CATACGTATAAAGATGTTTGCTTCACAGTTCACGGTGTCAATTTCTTTGC
CCACCGATTGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCACATGTTCA
CCACAAaatggaaagaaagaaacaacaTTCGAATCAATAACCAAAAGGTC
ACGACGAAGGCCTTTGAGTTACTCATCCAATACATCTATACTGATCGTAT
GGAAATTCCCGTGGAAGAGCTCGATGATATCAAGATATTGTTGAAACAAT
GTTATTTGTTCCAAGCTGCTGAAAAAGTCGAACGAATGGAAAAGGAATTC
AACTTTTATTGTATGTCAACAAAGAATATCACCAAGCTGTTTGATTTCTG
TCGCACTGGAAATTTGTTTGATTTAAAgAACATAGTGGAAGCAGAAGAAG
TTGATGTCAACGTAAGAGACAAATGGGACAGTACTCCACTGTATTATGCG
TGTTTATGTGGTCATGAGAAACTGGTGGAATATTTGTTACAAAAAGGTGC
AAAGTGTGCTGCCAATACTTTCGATGGTGAAAGATGTTTATATTCTGCTT
TGacgcaaaatatcaaaaagatgTTAAAAGATTACAAAGCAATATCCAAA
GATTGTATACGAAGAAATGCATatgtggaatttttcaaaagATGTTTATC
TGAGCATACGTATAAAGATGTTTGCTTCACAGTTCACGGTGTCAATTTCT
TTGCCCACCGATTGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCACATG
TTCACCACAAaatggaaagaaagaaacaacaTTCGAATCAATAACCAAAA
GGTCACGACGAAGGCCTTTGAGTTACTCATCCAATACATCTATACTGATC
GTATGGAAATTCCCGTGGAAGAGCTCGATGATATCAAGATATTGTTGAAA
CAATGTTATTTGTTCCAAGCTGCTGAAAAAGTCGAACGAATGGAAAAGGA
ATTCAACTTTTATTGTATGTCAACAAAGAATATCACCAAGCTGTTTGATT
TCTGTCGCACTGGAAATTTGTTTGATTTAAAgAACATAGTGGAAGCAGAA
GAAGTTGATGTCAACGTAAGAGACAAATGGGACAGTACTCCACTGTATTA
TGCGTGTTTATGTGGTCATGAGAAACTGGTGGAATATTTGTTACAAAAAG
GTGCAAAGTGTGCTGCCAATACTTTCGATGGTGAAAGATGTTTATATTCT
GCTTTGacgcaaaatatcaaaaagatgTTAAAAGATTACAAAGCAATATC
CAAAGATTGTATACGAAGAAATGCATatgtggaatttttcaaaagATGTT
TATCTGAGCATACGTATAAAGATGTTTGCTTCACAGTTCACGGTGTCAAT
TTCTTTGCCCACCGATTGGTTCTGTCCGTTCGTTCACCTTACTTCGCTCA
CATGTTCACCACAAaatggaaagaaagaaacaacaTTCGAATCAATAACC
AAAAGGTCACGACGAAGGCCTTTGAGTTACTCATCCAATACATCTATACT
GATCGTATGGAAATTCCCGTGGAAGAGCTCGATGATATCAAGATATTGTT
GAAACAATGTTATTTGTTCCAAGCTGCTGAAAAAGTCGAACGAATGGAAA
AGGAATTCAACTTTTATTGTATGTCAACAAAGAATATCACCAAGCTGTTT
GATTTCTGTCGCACTGGAAATTTGTTTGATTTAAAgAACATAGTGGAAGC
AGAAGAAGTTGATGTCAACGTAAGAGACAAATGGGACAGTACTCCACTGT
ATTATGCGTGTTTATGTGGTCATGAGAAACTGGTGGAATATTTGTTACAA
AAAGGTGCAAAGTGTGCTGCCAATACTTTCGATGGTGAAAGATGTTTATA
TTCTGCTTTGacgcaaaatatcaaaaagatgTTAAAAGATTACAAAGCAA
TATCCAAAGATTGTATACGAAGAAATGCATatgtggaatttttcaaaagA
TGTTTATCTGAGCATACGTATAAAGATGTTTGCTTCACAGTTCACGGTGT
CAATTTCTTTGCCCACCGATTGGTTCTGTCCGTTCGTTCACCTTACTTCG
CTCACATGTTCACCACAAaatggaaagaaagaaacaacaTTCGAATCAAT
AACCAAAAGGTCACGACGAAGGCCTTTGAGTTACTCATCCAATACATCTA
TACTGATCGTATGGAAATTCCCGTGGAAGAGCTCGATGATATCAAGATAT
TGTTGAAACAATGTTATTTGTTCCAAGCTGCTGAAAAAGTCGAACGAATG
GAAAAGGAATTCAACTTTTATTGTATGTCAACAAAGAATATCACCAAGCT
GTTTGATTTCTGTCGCACTGGAAATTTGTTTGATTTAAAgAACATAGTGG
AAGCAGAAGAAGTTGATGTCAACGTAAGAGACAAATGGGACAGTACTCCA
CTGTATTATGCGTGTTTATGTGGTCATGAGAAACTGGTGGAATATTTGTT
ACAAAAAGGTGCAAAGTGTGCTGCCAATACTTTCGATGGTGAAAGATGTT
TATATTCTGCTTTGacgcaaaatatcaaaaagatgTTAAAAGATTACAAA
GCAATATCCAAAGATTGTATACGAAGAAATGCATatgtggaatttttcaa
aagATGTTTATCTGAGCATACGTATAAAGATGTTTGCTTCACAGTTCACG
GTGTCAATTTCTTTGCCCACCGATTGGTTCTGTCCGTTCGTTCACCTTAC
TTCGCTCACATGTTCACCACAAaatggaaagaaagaaacaacaTTCGAAT
CAATAACCAAAAGGTCACGACGAAGGCCTTTGAGTTACTCATCCAATACA
TCTATACTGATCGTATGGAAATTCCCGTGGAAGAGCTCGATGATATCAAG
ATATTGTTGAAACAATGTTATTTGTTCCAAGCTGCTGAAAAAGTCGAACG
AATGGAAAAGGAATTCAACTTTTATTGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037297	XLOC_037297	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059222-protein	TCONS_00059222-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:29320..42914 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72503	3.11725	1.30537	0.696599	5.30026	4.35587	6.73741	6.81208	8.52291	4.70415	7.00823	5.86337	19.7962	21.2463	6.12993	5.93967	9.95296	15.524	23.007	15.2146	18.6456	15.5697	7.45064	10.543	29.2574	29.8274	0.934138	1.07362	0.465318	0.592607

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000210	BTB/POZ_dom
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom
IPR011333	SKP1/BTB/POZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00059222 vs. Swiss-Prot (Human)
Match: ABTB1 (Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Homo sapiens GN=ABTB1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.416e-66
Identity = 100/204 (49.02%), Postives = 138/204 (67.65%), Query Frame = 1

Query:  244 NITKLFDFCRTGNLFDLKNIVEAEEVDVNVRDKWDSTPLYYACLCGHEKLVEYLLQKGAKCAANTFDGERCLYSALTQNIKKMLKDYKAISKDCIRRNAYVEFFKRCLSEHTYKDVCFTVHGVNFFAHRLVLSVRSPYFAHMFTTKWKERNNIRINNQKVTTKAFELLIQYIYTDRMEIPVEELDDIKILLKQCYLFQAAEKVE 855
            + + LF  CR G++  ++ ++E  +V+VNVRDKWDSTPLYYACLCGHE+LV YLL  GA+C ANTFDGERCLY AL+  I++ L+DYK ++  C RR+ Y +F +R L +  + DV F VHG  F  HR VL  RS YFA+M  TKWK ++ + + +  +   AF  L+QY+YT R++I VE + D + L KQC L+     +E
Sbjct:    2 DTSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARCEANTFDGERCLYGALSDPIRRALRDYKQVTASCRRRDYYDDFLQRLLEQGIHSDVVFVVHGKPFRVHRCVLGARSAYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLSDLE 205

The following BLAST results are available for this feature:

BLAST of TCONS_00059222 vs. Swiss-Prot (Human)

BLAST of TCONS_00059222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABTB1	8.416e-66	49.02	Ankyrin repeat and BTB/POZ domain-containing prote...	[more]

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TCONS_00059222 (transcript) - C. hemisphaerica